Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30853 * 125.89256 * 2 1 4 4 N 1.40079 * 108.22321 * 180.12309 * 3 2 1 5 5 C 1.46499 * 126.04010 * 179.81593 * 4 3 2 6 6 C 1.50702 * 109.47053 * 269.69025 * 5 4 3 7 7 O 1.21277 * 120.00244 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99572 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00270 * 4.93544 * 8 6 5 10 10 C 1.46508 * 119.99560 * 184.92609 * 8 6 5 11 11 C 1.53005 * 109.46808 * 96.87095 * 10 8 6 12 12 H 1.08995 * 112.73947 * 75.01724 * 11 10 8 13 13 C 1.53496 * 113.46830 * 205.84040 * 11 10 8 14 14 C 1.53239 * 83.43019 * 140.67550 * 13 11 10 15 15 N 1.47061 * 88.08099 * 334.10311 * 14 13 11 16 16 C 1.36947 * 136.05182 * 207.19656 * 15 14 13 17 17 H 1.07995 * 119.99948 * 216.09811 * 16 15 14 18 18 C 1.38813 * 119.99920 * 36.38282 * 16 15 14 19 19 N 1.31618 * 120.00024 * 211.99968 * 18 16 15 20 20 Si 1.86802 * 119.99971 * 31.99748 * 18 16 15 21 21 H 1.48500 * 109.47104 * 96.01985 * 20 18 16 22 22 H 1.48501 * 109.47198 * 216.02006 * 20 18 16 23 23 H 1.48500 * 109.47243 * 336.01823 * 20 18 16 24 24 C 1.35052 * 107.92324 * 359.55013 * 4 3 2 25 25 C 1.50706 * 126.13191 * 180.28272 * 24 4 3 26 26 C 1.35365 * 107.72880 * 0.26549 * 24 4 3 27 27 Cl 1.73604 * 126.04448 * 180.02562 * 26 24 4 28 28 H 1.09000 * 109.47173 * 270.37673 * 1 2 3 29 29 H 1.09003 * 109.47102 * 30.37170 * 1 2 3 30 30 H 1.08996 * 109.47389 * 150.37510 * 1 2 3 31 31 H 1.08998 * 109.47312 * 149.68434 * 5 4 3 32 32 H 1.09003 * 109.46526 * 29.68950 * 5 4 3 33 33 H 1.09004 * 109.46935 * 269.99332 * 9 8 6 34 34 H 1.08994 * 109.47591 * 29.99536 * 9 8 6 35 35 H 1.08999 * 109.47171 * 150.00083 * 9 8 6 36 36 H 1.08993 * 109.47467 * 336.87387 * 10 8 6 37 37 H 1.09000 * 109.47208 * 216.86773 * 10 8 6 38 38 H 1.09005 * 114.20376 * 254.43560 * 13 11 10 39 39 H 1.08995 * 114.20369 * 27.06118 * 13 11 10 40 40 H 1.08994 * 113.38076 * 219.28794 * 14 13 11 41 41 H 1.09003 * 113.46582 * 88.93092 * 14 13 11 42 42 H 0.96998 * 119.99856 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46868 * 90.00492 * 25 24 4 44 44 H 1.08997 * 109.47019 * 209.99924 * 25 24 4 45 45 H 1.08993 * 109.47079 * 330.00658 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 -0.0029 5 6 4.7897 1.5020 -0.0076 6 6 5.1952 1.7906 -1.4301 7 8 4.5608 1.3181 -2.3493 8 7 6.2631 2.5737 -1.6806 9 6 7.0934 3.0560 -0.5742 10 6 6.5935 2.9426 -3.0594 11 6 6.0169 4.3255 -3.3695 12 1 6.5849 5.1323 -2.9064 13 6 5.7380 4.5509 -4.8620 14 6 4.4860 5.2638 -4.3400 15 7 4.5679 4.4213 -3.1375 16 6 3.6831 3.9350 -2.2122 17 1 3.9782 3.8471 -1.1770 18 6 2.4090 3.5496 -2.6058 19 7 1.3950 3.6858 -1.7778 20 14 2.1335 2.8376 -4.3107 21 1 2.1511 1.3545 -4.2366 22 1 0.8186 3.2917 -4.8303 23 1 3.2119 3.3005 -5.2207 24 6 3.6149 -0.7156 0.0055 25 6 4.8360 -1.5988 0.0120 26 6 2.3274 -1.1335 0.0075 27 17 1.7891 -2.7840 0.0180 28 1 -0.3633 0.0068 1.0276 29 1 -0.3633 0.8867 -0.5196 30 1 -0.3634 -0.8933 -0.5080 31 1 5.6090 1.0030 0.5098 32 1 4.5554 2.4375 0.5004 33 1 6.7060 4.0108 -0.2186 34 1 7.0731 2.3302 0.2386 35 1 8.1191 3.1861 -0.9196 36 1 6.1670 2.2094 -3.7439 37 1 7.6766 2.9652 -3.1799 38 1 6.4548 5.2066 -5.3565 39 1 5.5321 3.6382 -5.4209 40 1 3.5978 5.0749 -4.9428 41 1 4.6421 6.3237 -4.1390 42 1 0.5046 3.4168 -2.0530 43 1 5.1295 -1.8054 1.0412 44 1 4.6092 -2.5360 -0.4962 45 1 5.6524 -1.0937 -0.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479271027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = 120.888959 kcal Electronic energy + Delta-G solvation = -29745.855327 eV Core-core repulsion = 25829.470934 eV Total energy + Delta-G solvation = -3916.384393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97935 -39.39969 -37.81841 -36.07268 -34.80696 -33.66928 -32.14904 -31.60476 -29.78713 -28.60549 -27.97765 -26.65839 -26.26572 -25.18611 -23.14308 -22.41245 -20.13221 -19.61624 -18.93727 -18.56265 -17.10709 -16.76246 -16.44095 -15.53067 -15.39174 -14.85530 -14.59163 -14.33342 -13.87888 -13.59948 -13.32676 -13.17513 -13.05030 -12.88255 -12.72777 -12.57736 -12.41900 -12.23458 -12.13637 -11.91694 -11.75766 -11.65687 -11.54865 -11.38998 -11.02878 -10.96129 -10.80679 -10.55397 -10.29596 -9.95497 -9.91890 -9.79968 -9.31245 -9.19860 -8.54356 -8.16220 -7.94079 -7.84384 -6.59756 -5.83274 -3.10411 2.09507 2.38495 3.07280 3.16609 3.27681 3.62159 3.70173 3.73485 3.82991 4.72443 4.78707 4.83211 4.93137 5.06840 5.13177 5.22213 5.31071 5.37763 5.48267 5.52029 5.53297 5.58042 5.67515 5.76471 5.82343 5.87332 5.91644 5.99157 6.00635 6.05606 6.23823 6.26825 6.27877 6.47237 6.50897 6.59514 6.75769 6.95405 7.05209 7.16973 7.27805 7.68513 7.95138 8.20961 8.46919 8.86326 8.94719 9.90127 10.70605 11.31645 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.005223 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.193644 B = 5359.187387 C = 6500.789763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.072 3.928 3 N -0.203 5.203 4 N -0.340 5.340 5 C 0.124 3.876 6 C 0.523 3.477 7 O -0.488 6.488 8 N -0.611 5.611 9 C 0.083 3.917 10 C 0.124 3.876 11 C 0.114 3.886 12 H 0.047 0.953 13 C -0.156 4.156 14 C 0.107 3.893 15 N -0.597 5.597 16 C -0.239 4.239 17 H 0.066 0.934 18 C 0.079 3.921 19 N -0.858 5.858 20 Si 0.855 3.145 21 H -0.289 1.289 22 H -0.311 1.311 23 H -0.264 1.264 24 C 0.095 3.905 25 C -0.089 4.089 26 C -0.185 4.185 27 Cl -0.060 7.060 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.258 0.742 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 -7.261 5.501 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 N -0.023 5.023 4 N -0.121 5.121 5 C -0.002 4.002 6 C 0.308 3.692 7 O -0.360 6.360 8 N -0.347 5.347 9 C -0.061 4.061 10 C 0.000 4.000 11 C 0.007 3.993 12 H 0.064 0.936 13 C -0.195 4.195 14 C -0.018 4.018 15 N -0.324 5.324 16 C -0.364 4.364 17 H 0.084 0.916 18 C -0.126 4.126 19 N -0.495 5.495 20 Si 0.684 3.316 21 H -0.216 1.216 22 H -0.239 1.239 23 H -0.189 1.189 24 C -0.033 4.033 25 C -0.148 4.148 26 C -0.224 4.224 27 Cl -0.032 7.032 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.999 -6.409 5.251 12.986 hybrid contribution -0.232 -1.187 -1.029 1.589 sum 9.767 -7.596 4.222 13.073 Atomic orbital electron populations 1.20122 0.86688 1.03469 1.02535 1.22255 0.97333 0.88931 1.01180 1.78113 0.84704 1.19459 1.20043 1.47702 1.05668 1.02680 1.56078 1.21497 0.84668 0.96595 0.97410 1.19957 0.79875 0.78953 0.90435 1.90724 1.49765 1.50105 1.45359 1.47370 1.28854 1.51389 1.07047 1.21682 0.95090 0.99698 0.89664 1.21726 0.97592 0.98006 0.82693 1.22697 0.89966 0.94307 0.92340 0.93602 1.23496 0.98854 1.00753 0.96386 1.22579 0.95660 0.93842 0.89755 1.45442 1.01585 1.53456 1.31956 1.17706 0.92028 1.39990 0.86706 0.91639 1.25131 0.95416 0.96069 0.95969 1.69979 0.98851 1.43850 1.36807 0.87180 0.75514 0.80963 0.87976 1.21639 1.23939 1.18907 1.20489 0.95784 0.85208 1.01817 1.20417 0.93076 0.98406 1.02872 1.20206 0.92143 0.85868 1.24135 1.98255 1.90012 1.17007 1.97950 0.90877 0.90123 0.90993 0.87713 0.85799 0.92700 0.92148 0.91483 0.89997 0.92301 0.92499 0.90461 0.93926 0.95002 0.93234 0.90243 0.89660 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.31 36.01 0.37 -0.82 16 2 C 0.07 1.45 7.22 -82.38 -0.59 0.86 16 3 N -0.20 -4.64 12.57 33.68 0.42 -4.21 16 4 N -0.34 -6.67 3.10 -58.27 -0.18 -6.85 16 5 C 0.12 2.08 5.05 -5.19 -0.03 2.06 16 6 C 0.52 10.24 4.66 -10.98 -0.05 10.19 16 7 O -0.49 -12.03 13.72 5.56 0.08 -11.96 16 8 N -0.61 -10.14 2.50 -181.57 -0.45 -10.59 16 9 C 0.08 0.95 10.24 59.84 0.61 1.56 16 10 C 0.12 2.10 5.68 -4.03 -0.02 2.08 16 11 C 0.11 2.16 4.38 -72.39 -0.32 1.84 16 12 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.16 -2.84 7.91 -26.35 -0.21 -3.05 16 14 C 0.11 2.33 7.51 -8.64 -0.06 2.27 16 15 N -0.60 -14.34 2.97 -177.17 -0.53 -14.87 16 16 C -0.24 -6.53 7.13 -15.05 -0.11 -6.64 16 17 H 0.07 1.90 6.41 -52.49 -0.34 1.57 16 18 C 0.08 2.32 5.28 -17.43 -0.09 2.22 16 19 N -0.86 -25.92 13.97 55.49 0.78 -25.15 16 20 Si 0.85 24.25 26.48 -169.99 -4.50 19.75 16 21 H -0.29 -8.85 7.11 56.52 0.40 -8.45 16 22 H -0.31 -8.94 7.11 56.52 0.40 -8.54 16 23 H -0.26 -7.16 5.18 56.52 0.29 -6.87 16 24 C 0.10 1.66 6.94 -82.20 -0.57 1.09 16 25 C -0.09 -1.12 9.73 36.01 0.35 -0.77 16 26 C -0.18 -3.37 6.63 -39.97 -0.27 -3.64 16 27 Cl -0.06 -0.91 28.59 -51.86 -1.48 -2.39 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 31 H 0.11 1.23 6.77 -51.93 -0.35 0.87 16 32 H 0.12 2.16 7.76 -51.93 -0.40 1.75 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.54 6.48 -51.93 -0.34 0.20 16 35 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 36 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 37 H 0.06 0.78 7.99 -51.93 -0.42 0.36 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.49 7.78 -51.93 -0.40 1.09 16 40 H 0.04 1.01 5.55 -51.93 -0.29 0.73 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 45 H 0.07 0.84 7.72 -51.93 -0.40 0.44 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -36.75 374.51 -7.95 -44.70 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.74 Total: -3.33 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.99 Total: 9.26 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.04 Total: -61.67 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.50 Total: 19.75 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.75 -7.95 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479271027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.588 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds