Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30853 * 125.89256 * 2 1 4 4 N 1.40079 * 108.22321 * 180.12309 * 3 2 1 5 5 C 1.46499 * 126.04010 * 179.81593 * 4 3 2 6 6 C 1.50702 * 109.47053 * 269.69025 * 5 4 3 7 7 O 1.21277 * 120.00244 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99572 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00270 * 4.93544 * 8 6 5 10 10 C 1.46508 * 119.99560 * 184.92609 * 8 6 5 11 11 C 1.53005 * 109.46808 * 96.87095 * 10 8 6 12 12 H 1.08995 * 112.73947 * 75.01724 * 11 10 8 13 13 C 1.53496 * 113.46830 * 205.84040 * 11 10 8 14 14 C 1.53239 * 83.43019 * 140.67550 * 13 11 10 15 15 N 1.47061 * 88.08099 * 334.10311 * 14 13 11 16 16 C 1.36947 * 136.05182 * 207.19656 * 15 14 13 17 17 H 1.07995 * 119.99948 * 216.09811 * 16 15 14 18 18 C 1.38813 * 119.99920 * 36.38282 * 16 15 14 19 19 N 1.31618 * 120.00024 * 211.99968 * 18 16 15 20 20 Si 1.86802 * 119.99971 * 31.99748 * 18 16 15 21 21 H 1.48500 * 109.47104 * 96.01985 * 20 18 16 22 22 H 1.48501 * 109.47198 * 216.02006 * 20 18 16 23 23 H 1.48500 * 109.47243 * 336.01823 * 20 18 16 24 24 C 1.35052 * 107.92324 * 359.55013 * 4 3 2 25 25 C 1.50706 * 126.13191 * 180.28272 * 24 4 3 26 26 C 1.35365 * 107.72880 * 0.26549 * 24 4 3 27 27 Cl 1.73604 * 126.04448 * 180.02562 * 26 24 4 28 28 H 1.09000 * 109.47173 * 270.37673 * 1 2 3 29 29 H 1.09003 * 109.47102 * 30.37170 * 1 2 3 30 30 H 1.08996 * 109.47389 * 150.37510 * 1 2 3 31 31 H 1.08998 * 109.47312 * 149.68434 * 5 4 3 32 32 H 1.09003 * 109.46526 * 29.68950 * 5 4 3 33 33 H 1.09004 * 109.46935 * 269.99332 * 9 8 6 34 34 H 1.08994 * 109.47591 * 29.99536 * 9 8 6 35 35 H 1.08999 * 109.47171 * 150.00083 * 9 8 6 36 36 H 1.08993 * 109.47467 * 336.87387 * 10 8 6 37 37 H 1.09000 * 109.47208 * 216.86773 * 10 8 6 38 38 H 1.09005 * 114.20376 * 254.43560 * 13 11 10 39 39 H 1.08995 * 114.20369 * 27.06118 * 13 11 10 40 40 H 1.08994 * 113.38076 * 219.28794 * 14 13 11 41 41 H 1.09003 * 113.46582 * 88.93092 * 14 13 11 42 42 H 0.96998 * 119.99856 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46868 * 90.00492 * 25 24 4 44 44 H 1.08997 * 109.47019 * 209.99924 * 25 24 4 45 45 H 1.08993 * 109.47079 * 330.00658 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 -0.0029 5 6 4.7897 1.5020 -0.0076 6 6 5.1952 1.7906 -1.4301 7 8 4.5608 1.3181 -2.3493 8 7 6.2631 2.5737 -1.6806 9 6 7.0934 3.0560 -0.5742 10 6 6.5935 2.9426 -3.0594 11 6 6.0169 4.3255 -3.3695 12 1 6.5849 5.1323 -2.9064 13 6 5.7380 4.5509 -4.8620 14 6 4.4860 5.2638 -4.3400 15 7 4.5679 4.4213 -3.1375 16 6 3.6831 3.9350 -2.2122 17 1 3.9782 3.8471 -1.1770 18 6 2.4090 3.5496 -2.6058 19 7 1.3950 3.6858 -1.7778 20 14 2.1335 2.8376 -4.3107 21 1 2.1511 1.3545 -4.2366 22 1 0.8186 3.2917 -4.8303 23 1 3.2119 3.3005 -5.2207 24 6 3.6149 -0.7156 0.0055 25 6 4.8360 -1.5988 0.0120 26 6 2.3274 -1.1335 0.0075 27 17 1.7891 -2.7840 0.0180 28 1 -0.3633 0.0068 1.0276 29 1 -0.3633 0.8867 -0.5196 30 1 -0.3634 -0.8933 -0.5080 31 1 5.6090 1.0030 0.5098 32 1 4.5554 2.4375 0.5004 33 1 6.7060 4.0108 -0.2186 34 1 7.0731 2.3302 0.2386 35 1 8.1191 3.1861 -0.9196 36 1 6.1670 2.2094 -3.7439 37 1 7.6766 2.9652 -3.1799 38 1 6.4548 5.2066 -5.3565 39 1 5.5321 3.6382 -5.4209 40 1 3.5978 5.0749 -4.9428 41 1 4.6421 6.3237 -4.1390 42 1 0.5046 3.4168 -2.0530 43 1 5.1295 -1.8054 1.0412 44 1 4.6092 -2.5360 -0.4962 45 1 5.6524 -1.0937 -0.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479271027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 95.264230 kcal Electronic energy + Delta-G solvation = -29746.966499 eV Core-core repulsion = 25829.470934 eV Total energy + Delta-G solvation = -3917.495565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35936 -40.88777 -39.43192 -37.34149 -36.20372 -35.05255 -34.27844 -32.86497 -31.19191 -30.33540 -29.51114 -27.88282 -27.46946 -26.54994 -25.07956 -23.92764 -21.49619 -21.05381 -20.62389 -19.92167 -18.98670 -18.18411 -17.81105 -17.05691 -16.92898 -16.54064 -16.03897 -15.70769 -15.36917 -15.24345 -14.92375 -14.85113 -14.43562 -14.22737 -14.15523 -14.02234 -13.83160 -13.39945 -13.27627 -13.18408 -13.14178 -13.05888 -12.91961 -12.78455 -12.71011 -12.69202 -12.54282 -12.17812 -12.07985 -11.75829 -11.71896 -11.23599 -11.20295 -10.75596 -10.35267 -9.96960 -9.30994 -9.20237 -8.56488 -8.08524 -5.24685 0.75070 1.08986 1.24492 1.40608 1.47623 1.65221 1.82870 1.91513 2.38015 2.58099 3.14458 3.44481 3.53578 3.60991 3.76463 3.86685 3.91193 4.04256 4.26007 4.26265 4.35924 4.44354 4.46857 4.51788 4.64671 4.69276 4.72701 4.74058 4.77394 4.86605 4.89487 4.91217 4.95549 5.02463 5.04169 5.11988 5.14128 5.55468 5.57553 5.75232 5.86805 5.99569 6.29454 6.63755 6.74560 6.78416 7.53458 7.71331 8.64734 9.12118 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.005223 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.193644 B = 5359.187387 C = 6500.789763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.053 3.947 3 N -0.267 5.267 4 N -0.349 5.349 5 C 0.123 3.877 6 C 0.514 3.486 7 O -0.550 6.550 8 N -0.609 5.609 9 C 0.075 3.925 10 C 0.123 3.877 11 C 0.119 3.881 12 H 0.075 0.925 13 C -0.135 4.135 14 C 0.095 3.905 15 N -0.631 5.631 16 C -0.191 4.191 17 H 0.050 0.950 18 C 0.041 3.959 19 N -0.890 5.890 20 Si 0.884 3.116 21 H -0.331 1.331 22 H -0.325 1.325 23 H -0.248 1.248 24 C 0.100 3.900 25 C -0.086 4.086 26 C -0.206 4.206 27 Cl -0.037 7.037 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.053 0.947 42 H 0.248 0.752 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -7.301 6.161 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 N -0.087 5.087 4 N -0.130 5.130 5 C -0.002 4.002 6 C 0.301 3.699 7 O -0.426 6.426 8 N -0.343 5.343 9 C -0.067 4.067 10 C -0.001 4.001 11 C 0.013 3.987 12 H 0.092 0.908 13 C -0.173 4.173 14 C -0.030 4.030 15 N -0.359 5.359 16 C -0.318 4.318 17 H 0.067 0.933 18 C -0.159 4.159 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.261 1.261 22 H -0.254 1.254 23 H -0.172 1.172 24 C -0.029 4.029 25 C -0.144 4.144 26 C -0.244 4.244 27 Cl -0.009 7.009 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.470 -6.395 5.903 16.885 hybrid contribution -1.411 -1.144 -1.223 2.190 sum 13.058 -7.539 4.680 15.788 Atomic orbital electron populations 1.20167 0.85650 1.02821 1.03826 1.22733 0.98430 0.89595 1.00735 1.77994 0.86745 1.21451 1.22539 1.47899 1.05207 1.03800 1.56119 1.21728 0.85425 0.96849 0.96177 1.20491 0.79861 0.78700 0.90842 1.90705 1.52017 1.52653 1.47185 1.47532 1.28389 1.50106 1.08284 1.22016 0.95766 0.99869 0.89005 1.21718 1.00276 0.95620 0.82510 1.22888 0.86689 0.96262 0.92842 0.90761 1.23320 0.97539 1.00273 0.96177 1.22781 0.96520 0.95032 0.88681 1.45752 1.04053 1.54411 1.31666 1.17532 0.91722 1.35904 0.86690 0.93268 1.25383 0.96174 0.98334 0.96037 1.70033 0.98724 1.47079 1.37324 0.86682 0.75137 0.78346 0.88132 1.26146 1.25412 1.17160 1.21280 0.97247 0.84877 0.99446 1.20608 0.91033 0.97467 1.05299 1.20375 0.92399 0.86711 1.24957 1.98247 1.89891 1.14835 1.97937 0.88543 0.92726 0.89525 0.82160 0.86927 0.93713 0.89242 0.87979 0.93439 0.87036 0.87664 0.92068 0.96745 0.92905 0.94290 0.86705 0.89155 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.40 10.31 71.24 0.73 -1.66 16 2 C 0.05 2.25 7.22 43.11 0.31 2.56 16 3 N -0.27 -12.73 12.57 -47.34 -0.60 -13.33 16 4 N -0.35 -13.75 3.10 -338.28 -1.05 -14.80 16 5 C 0.12 3.97 5.05 85.63 0.43 4.40 16 6 C 0.51 19.63 4.66 87.66 0.41 20.04 16 7 O -0.55 -27.55 13.72 -3.02 -0.04 -27.60 16 8 N -0.61 -18.37 2.50 -846.76 -2.12 -20.49 16 9 C 0.08 1.38 10.24 127.77 1.31 2.69 16 10 C 0.12 3.74 5.68 86.38 0.49 4.23 16 11 C 0.12 4.06 4.38 41.79 0.18 4.24 16 12 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.13 -4.41 7.91 30.84 0.24 -4.17 16 14 C 0.09 3.97 7.51 83.09 0.62 4.59 16 15 N -0.63 -29.54 2.97 -714.44 -2.12 -31.66 16 16 C -0.19 -10.57 7.13 84.03 0.60 -9.97 16 17 H 0.05 2.91 6.41 -2.91 -0.02 2.89 16 18 C 0.04 2.50 5.28 84.86 0.45 2.94 16 19 N -0.89 -56.69 13.97 21.65 0.30 -56.39 16 20 Si 0.88 52.41 26.48 68.60 1.82 54.23 16 21 H -0.33 -21.67 7.11 99.48 0.71 -20.96 16 22 H -0.32 -19.58 7.11 99.48 0.71 -18.87 16 23 H -0.25 -13.68 5.18 99.48 0.52 -13.16 16 24 C 0.10 3.42 6.94 41.40 0.29 3.71 16 25 C -0.09 -1.92 9.73 71.24 0.69 -1.23 16 26 C -0.21 -7.56 6.63 22.01 0.15 -7.41 16 27 Cl -0.04 -1.10 28.59 -2.72 -0.08 -1.17 16 28 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.77 8.00 -2.39 -0.02 2.75 16 31 H 0.16 3.16 6.77 -2.39 -0.02 3.14 16 32 H 0.11 3.89 7.76 -2.39 -0.02 3.87 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.12 6.48 -2.39 -0.02 1.11 16 35 H 0.10 1.21 7.96 -2.39 -0.02 1.19 16 36 H 0.05 1.81 6.92 -2.39 -0.02 1.80 16 37 H 0.11 2.27 7.99 -2.39 -0.02 2.25 16 38 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.06 2.23 7.78 -2.39 -0.02 2.21 16 40 H 0.01 0.68 5.55 -2.39 -0.01 0.66 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.95 7.91 -2.39 -0.02 1.93 16 45 H 0.08 1.65 7.72 -2.39 -0.02 1.63 16 Total: -1.00 -88.14 374.51 3.83 -84.31 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 0.81 Total: 1.92 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 6.91 Total: 24.98 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -5.58 Total: -136.67 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.04 Total: -27.60 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 1.82 Total: 54.23 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -88.14 3.83 -84.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479271027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.577 kcal (2) G-P(sol) polarization free energy of solvation -88.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds