Wall clock time and date at job start Sat Apr 11 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70590 * 2 1 4 4 C 1.41923 * 103.95813 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88027 * 180.26245 * 4 3 2 6 6 C 1.42901 * 117.00447 * 179.71253 * 5 4 3 7 7 C 1.50703 * 109.47311 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99996 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99752 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47126 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47026 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00081 * 66.04800 * 12 11 10 14 14 C 1.46903 * 110.99631 * 190.00099 * 12 11 10 15 15 C 1.50708 * 109.47132 * 169.99959 * 14 12 11 16 16 O 1.21288 * 119.99807 * 359.97438 * 15 14 12 17 17 N 1.34771 * 120.00188 * 179.97438 * 15 14 12 18 18 C 1.37097 * 120.00159 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99919 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00058 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00057 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46835 * 89.99819 * 22 20 18 24 24 H 1.48492 * 109.47433 * 210.00216 * 22 20 18 25 25 H 1.48504 * 109.47142 * 330.00306 * 22 20 18 26 26 N 1.30624 * 106.24445 * 0.02562 * 4 3 2 27 27 O 1.20905 * 111.49643 * 359.97438 * 26 4 3 28 28 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47372 * 299.95101 * 1 2 3 30 30 H 1.08998 * 109.47308 * 59.95142 * 1 2 3 31 31 H 1.07996 * 128.01544 * 0.04302 * 3 2 1 32 32 H 1.09005 * 109.46855 * 299.99920 * 6 5 4 33 33 H 1.08992 * 109.47170 * 59.99843 * 6 5 4 34 34 H 0.96991 * 119.99740 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46924 * 299.99222 * 10 9 7 36 36 H 1.08998 * 109.47791 * 59.99048 * 10 9 7 37 37 H 1.08997 * 109.47128 * 299.99944 * 11 10 9 38 38 H 1.09000 * 109.46877 * 59.99858 * 11 10 9 39 39 H 1.08996 * 109.46899 * 59.99738 * 13 12 11 40 40 H 1.09008 * 109.47241 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47266 * 299.99385 * 13 12 11 42 42 H 1.09000 * 109.47252 * 289.99907 * 14 12 11 43 43 H 1.09001 * 109.47584 * 50.00148 * 14 12 11 44 44 H 0.97001 * 119.99985 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6244 0.5358 -0.0006 5 8 4.7952 1.2219 0.0041 6 6 5.9988 0.4515 0.0087 7 6 7.1879 1.3773 0.0142 8 8 7.0211 2.5787 0.0137 9 7 8.4366 0.8703 0.0187 10 6 9.5925 1.7703 0.0234 11 6 10.8811 0.9454 0.0285 12 7 12.0402 1.8479 0.0327 13 6 12.1088 2.6110 1.2861 14 6 13.2862 1.1055 -0.2006 15 6 14.4140 2.0776 -0.4340 16 8 14.2006 3.2713 -0.4089 17 7 15.6595 1.6206 -0.6705 18 6 16.6854 2.5049 -0.8833 19 1 16.4954 3.5678 -0.8610 20 6 17.9694 2.0336 -1.1277 21 7 18.9527 2.8812 -1.3311 22 14 18.2982 0.1952 -1.1656 23 1 18.1166 -0.3117 -2.5496 24 1 19.6903 -0.0680 -0.7207 25 1 17.3490 -0.4963 -0.2567 26 7 3.4765 -0.7620 -0.0015 27 8 2.3086 -1.0748 -0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5130 0.8904 30 1 -0.3634 0.5146 -0.8895 31 1 2.0310 2.1264 0.0006 32 1 6.0242 -0.1773 0.8988 33 1 6.0313 -0.1770 -0.8811 34 1 8.5699 -0.0904 0.0187 35 1 9.5669 2.3993 -0.8665 36 1 9.5602 2.3987 0.9135 37 1 10.9066 0.3167 0.9185 38 1 10.9137 0.3169 -0.8614 39 1 12.1990 1.9223 2.1261 40 1 12.9762 3.2708 1.2628 41 1 11.2025 3.2057 1.3994 42 1 13.5112 0.4904 0.6706 43 1 13.1701 0.4668 -1.0762 44 1 15.8301 0.6659 -0.6909 45 1 19.8492 2.5523 -1.5014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480877146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:53 Heat of formation + Delta-G solvation = -19.668596 kcal Electronic energy + Delta-G solvation = -27689.671800 eV Core-core repulsion = 23326.483209 eV Total energy + Delta-G solvation = -4363.188591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.36433 -40.39633 -39.03688 -38.67868 -36.93846 -34.84936 -34.34167 -33.89160 -33.02134 -31.70009 -30.54740 -28.74377 -28.21190 -27.68183 -25.33495 -23.88867 -23.74911 -21.97609 -21.37951 -20.74541 -19.38178 -18.49325 -18.33043 -18.29943 -17.46014 -17.24116 -16.72646 -16.38620 -15.98482 -15.71189 -15.18730 -14.99115 -14.81357 -14.41470 -14.35446 -14.08738 -13.89229 -13.83902 -13.66762 -13.40513 -13.17766 -13.09724 -12.99692 -12.46273 -12.23938 -12.10393 -11.91213 -11.61134 -11.57992 -11.41448 -11.18144 -11.06872 -10.61771 -10.28081 -10.01138 -9.99072 -9.69045 -9.56029 -9.40748 -8.63485 -8.20224 -8.05201 -6.32377 -3.83952 0.91942 1.79091 1.82532 2.17454 2.59020 2.98499 3.00234 3.05048 3.13517 3.68802 3.70937 3.91146 4.08658 4.22891 4.28570 4.43906 4.51244 4.55079 4.67768 4.69262 4.74647 4.79852 4.93086 5.03733 5.16640 5.18647 5.26329 5.41378 5.44191 5.55637 5.69702 5.74417 5.77476 5.85891 5.92662 6.02447 6.45418 6.46857 6.99613 7.07414 7.18589 7.56624 7.73847 7.79128 8.13138 8.58558 8.93920 9.40782 9.81437 10.80758 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.001365 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.001940 B =20515.218543 C =20998.079559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.255 6.255 6 C 0.046 3.954 7 C 0.516 3.484 8 O -0.512 6.512 9 N -0.723 5.723 10 C 0.123 3.877 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.016 3.984 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.558 6.558 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.412 5.412 27 O 0.098 5.902 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.017 0.983 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.843 -13.261 4.243 37.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.160 6.160 6 C -0.033 4.033 7 C 0.300 3.700 8 O -0.386 6.386 9 N -0.377 5.377 10 C -0.001 4.001 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.131 4.131 14 C -0.087 4.087 15 C 0.237 3.763 16 O -0.439 6.439 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 N -0.140 5.140 27 O 0.038 5.962 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.197 0.803 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -33.999 -11.870 3.829 36.215 hybrid contribution 0.589 -1.975 0.578 2.141 sum -33.410 -13.845 4.408 36.433 Atomic orbital electron populations 1.20407 0.83375 1.05042 1.04540 1.24376 0.96533 0.85482 1.00633 1.21815 0.88231 1.01856 1.13589 1.22045 0.88362 0.88062 0.99956 1.86289 1.09960 1.30665 1.89118 1.22465 0.82376 0.93548 1.04873 1.19850 0.83701 0.89032 0.77421 1.90800 1.85454 1.15083 1.47302 1.45715 1.05215 1.10829 1.75986 1.21403 0.82456 0.92239 1.03953 1.22251 0.90360 0.94499 1.01341 1.61428 1.00843 1.25086 1.36547 1.22655 1.04681 0.98135 0.87660 1.21905 0.89983 0.95474 1.01340 1.19595 0.83079 0.89444 0.84141 1.90539 1.82695 1.16187 1.54502 1.42200 1.07896 1.07968 1.64935 1.19434 0.85800 0.92514 1.45638 0.86229 1.25029 0.95350 0.98157 0.97549 1.69619 1.00959 1.34087 1.47430 0.86677 0.78767 0.85115 0.78834 1.19599 1.20187 1.19577 1.74153 0.98067 1.14135 1.27673 1.84792 1.10270 1.32032 1.69080 0.89527 0.88761 0.88743 0.80275 0.88503 0.88415 0.76439 0.89825 0.90785 0.94386 0.90126 0.96479 0.88248 0.91646 0.93192 0.89149 0.79741 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.45 36.00 0.38 0.28 16 2 C -0.01 -0.04 7.48 -35.36 -0.26 -0.30 16 3 C -0.23 -1.71 11.11 -39.23 -0.44 -2.15 16 4 C 0.21 2.15 8.01 -16.66 -0.13 2.02 16 5 O -0.26 -2.92 9.74 -38.73 -0.38 -3.30 16 6 C 0.05 0.40 6.14 36.01 0.22 0.62 16 7 C 0.52 5.70 7.91 -10.98 -0.09 5.61 16 8 O -0.51 -8.15 16.50 -14.36 -0.24 -8.39 16 9 N -0.72 -6.25 5.56 -60.29 -0.33 -6.59 16 10 C 0.12 1.36 5.60 -4.04 -0.02 1.33 16 11 C 0.04 0.47 5.07 -3.82 -0.02 0.45 16 12 N -0.51 -7.86 4.50 -244.36 -1.10 -8.96 16 13 C 0.02 0.25 8.96 60.06 0.54 0.79 16 14 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 15 C 0.45 10.07 7.47 -10.98 -0.08 9.98 16 16 O -0.56 -14.71 13.91 5.55 0.08 -14.63 16 17 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 18 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 22 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 26 N -0.41 -4.06 11.54 30.38 0.35 -3.71 16 27 O 0.10 0.80 11.19 17.07 0.19 0.99 16 28 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 2.07 8.47 -40.82 -0.35 1.72 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 37 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 1.90 5.83 -51.92 -0.30 1.60 16 41 H 0.06 0.91 6.47 -51.93 -0.34 0.58 16 42 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.09 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -37.58 385.68 -5.96 -43.55 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.16 Total: 7.89 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -0.18 Total: 11.67 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.37 Total: -58.01 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.35 Total: -25.33 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.58 -5.96 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480877146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.876 kcal (2) G-P(sol) polarization free energy of solvation -37.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds