Wall clock time and date at job start Sat Apr 11 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70590 * 2 1 4 4 C 1.41923 * 103.95813 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88027 * 180.26245 * 4 3 2 6 6 C 1.42901 * 117.00447 * 179.71253 * 5 4 3 7 7 C 1.50703 * 109.47311 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99996 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99752 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47126 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47026 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00081 * 66.04800 * 12 11 10 14 14 C 1.46903 * 110.99631 * 190.00099 * 12 11 10 15 15 C 1.50708 * 109.47132 * 169.99959 * 14 12 11 16 16 O 1.21288 * 119.99807 * 359.97438 * 15 14 12 17 17 N 1.34771 * 120.00188 * 179.97438 * 15 14 12 18 18 C 1.37097 * 120.00159 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99919 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00058 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00057 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46835 * 89.99819 * 22 20 18 24 24 H 1.48492 * 109.47433 * 210.00216 * 22 20 18 25 25 H 1.48504 * 109.47142 * 330.00306 * 22 20 18 26 26 N 1.30624 * 106.24445 * 0.02562 * 4 3 2 27 27 O 1.20905 * 111.49643 * 359.97438 * 26 4 3 28 28 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47372 * 299.95101 * 1 2 3 30 30 H 1.08998 * 109.47308 * 59.95142 * 1 2 3 31 31 H 1.07996 * 128.01544 * 0.04302 * 3 2 1 32 32 H 1.09005 * 109.46855 * 299.99920 * 6 5 4 33 33 H 1.08992 * 109.47170 * 59.99843 * 6 5 4 34 34 H 0.96991 * 119.99740 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46924 * 299.99222 * 10 9 7 36 36 H 1.08998 * 109.47791 * 59.99048 * 10 9 7 37 37 H 1.08997 * 109.47128 * 299.99944 * 11 10 9 38 38 H 1.09000 * 109.46877 * 59.99858 * 11 10 9 39 39 H 1.08996 * 109.46899 * 59.99738 * 13 12 11 40 40 H 1.09008 * 109.47241 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47266 * 299.99385 * 13 12 11 42 42 H 1.09000 * 109.47252 * 289.99907 * 14 12 11 43 43 H 1.09001 * 109.47584 * 50.00148 * 14 12 11 44 44 H 0.97001 * 119.99985 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6244 0.5358 -0.0006 5 8 4.7952 1.2219 0.0041 6 6 5.9988 0.4515 0.0087 7 6 7.1879 1.3773 0.0142 8 8 7.0211 2.5787 0.0137 9 7 8.4366 0.8703 0.0187 10 6 9.5925 1.7703 0.0234 11 6 10.8811 0.9454 0.0285 12 7 12.0402 1.8479 0.0327 13 6 12.1088 2.6110 1.2861 14 6 13.2862 1.1055 -0.2006 15 6 14.4140 2.0776 -0.4340 16 8 14.2006 3.2713 -0.4089 17 7 15.6595 1.6206 -0.6705 18 6 16.6854 2.5049 -0.8833 19 1 16.4954 3.5678 -0.8610 20 6 17.9694 2.0336 -1.1277 21 7 18.9527 2.8812 -1.3311 22 14 18.2982 0.1952 -1.1656 23 1 18.1166 -0.3117 -2.5496 24 1 19.6903 -0.0680 -0.7207 25 1 17.3490 -0.4963 -0.2567 26 7 3.4765 -0.7620 -0.0015 27 8 2.3086 -1.0748 -0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5130 0.8904 30 1 -0.3634 0.5146 -0.8895 31 1 2.0310 2.1264 0.0006 32 1 6.0242 -0.1773 0.8988 33 1 6.0313 -0.1770 -0.8811 34 1 8.5699 -0.0904 0.0187 35 1 9.5669 2.3993 -0.8665 36 1 9.5602 2.3987 0.9135 37 1 10.9066 0.3167 0.9185 38 1 10.9137 0.3169 -0.8614 39 1 12.1990 1.9223 2.1261 40 1 12.9762 3.2708 1.2628 41 1 11.2025 3.2057 1.3994 42 1 13.5112 0.4904 0.6706 43 1 13.1701 0.4668 -1.0762 44 1 15.8301 0.6659 -0.6909 45 1 19.8492 2.5523 -1.5014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480877146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:53 Heat of formation + Delta-G solvation = -52.886748 kcal Electronic energy + Delta-G solvation = -27691.112247 eV Core-core repulsion = 23326.483209 eV Total energy + Delta-G solvation = -4364.629038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.95597 -41.24948 -40.51129 -39.63344 -38.21658 -36.09485 -35.62536 -34.78772 -33.74929 -33.58963 -31.49346 -29.72929 -28.95398 -28.45486 -26.93550 -25.15854 -24.48708 -22.69173 -22.35776 -21.58663 -21.23488 -20.17395 -19.11565 -18.94452 -18.21245 -17.99499 -17.65739 -17.46900 -17.20389 -16.78686 -16.71280 -16.23636 -15.91332 -15.42179 -15.40152 -15.01027 -14.90777 -14.79362 -14.46638 -14.40839 -14.22305 -14.11148 -13.91914 -13.72415 -13.23950 -13.10567 -13.00426 -12.87616 -12.59779 -12.56330 -12.40066 -12.16257 -12.14806 -11.96844 -11.46418 -11.22920 -10.52701 -10.38008 -10.31193 -10.26059 -10.22312 -9.25756 -8.40172 -6.01205 0.42393 1.12471 1.17344 1.30600 1.32312 1.36933 1.45600 1.97869 2.07972 2.24253 2.30582 2.73954 3.09339 3.15784 3.25613 3.52639 3.80718 3.83932 3.90579 3.94780 3.98195 4.04427 4.12500 4.34574 4.37156 4.43837 4.45306 4.60950 4.61353 4.77537 4.79298 4.82374 4.89650 4.91144 5.18167 5.20487 5.27240 5.53988 5.79093 5.86831 5.98822 6.13026 6.33021 6.61285 6.90260 7.00608 7.18854 7.41591 7.99907 8.77738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.001365 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.001940 B =20515.218543 C =20998.079559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.255 4.255 4 C 0.192 3.808 5 O -0.283 6.283 6 C 0.051 3.949 7 C 0.516 3.484 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.128 3.872 11 C 0.053 3.947 12 N -0.544 5.544 13 C 0.023 3.977 14 C 0.058 3.942 15 C 0.448 3.552 16 O -0.608 6.608 17 N -0.591 5.591 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.228 1.228 26 N -0.429 5.429 27 O 0.091 5.909 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.193 0.807 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.423 0.577 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.222 -18.168 4.619 41.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C -0.276 4.276 4 C -0.005 4.005 5 O -0.189 6.189 6 C -0.027 4.027 7 C 0.301 3.699 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.004 3.996 11 C -0.074 4.074 12 N -0.269 5.269 13 C -0.125 4.125 14 C -0.073 4.073 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.152 1.152 26 N -0.158 5.158 27 O 0.032 5.968 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.211 0.789 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -36.408 -16.849 4.214 40.338 hybrid contribution 1.194 -0.310 0.466 1.318 sum -35.214 -17.159 4.680 39.451 Atomic orbital electron populations 1.20685 0.80013 1.06467 1.06105 1.25111 0.98003 0.84104 0.97918 1.22163 0.87567 1.03153 1.14740 1.22402 0.88621 0.88600 1.00909 1.86237 1.11010 1.32092 1.89534 1.22544 0.80650 0.92729 1.06811 1.20329 0.84809 0.88561 0.76159 1.90777 1.86301 1.17598 1.50129 1.45465 1.03899 1.11716 1.74568 1.21184 0.83766 0.92552 1.02102 1.22253 0.87543 0.93725 1.03896 1.61283 1.02016 1.26878 1.36680 1.22473 1.02855 0.98247 0.88952 1.21838 0.87435 0.93714 1.04336 1.20978 0.84040 0.90050 0.81300 1.90533 1.83680 1.19244 1.55762 1.42013 1.07392 1.08216 1.65721 1.18999 0.88166 0.90750 1.47882 0.92884 1.26128 0.94078 1.05221 0.95958 1.69812 1.01785 1.37611 1.48562 0.85350 0.79275 0.76477 0.80298 1.18130 1.20217 1.15164 1.74123 0.99034 1.14097 1.28495 1.84747 1.10138 1.32904 1.69056 0.88192 0.87018 0.87042 0.78940 0.86339 0.86407 0.73879 0.92418 0.92235 0.91433 0.87649 0.94126 0.92849 0.91068 0.89778 0.85529 0.77420 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.03 10.45 71.24 0.74 0.77 16 2 C 0.01 0.12 7.48 25.00 0.19 0.30 16 3 C -0.25 -3.55 11.11 22.50 0.25 -3.30 16 4 C 0.19 3.80 8.01 85.78 0.69 4.49 16 5 O -0.28 -6.50 9.74 -71.23 -0.69 -7.19 16 6 C 0.05 0.82 6.14 71.24 0.44 1.26 16 7 C 0.52 11.05 7.91 87.66 0.69 11.74 16 8 O -0.57 -18.68 16.50 15.99 0.26 -18.42 16 9 N -0.70 -10.61 5.56 -463.05 -2.57 -13.18 16 10 C 0.13 2.65 5.60 86.38 0.48 3.13 16 11 C 0.05 0.93 5.07 86.30 0.44 1.37 16 12 N -0.54 -15.40 4.50 -927.03 -4.17 -19.57 16 13 C 0.02 0.68 8.96 127.69 1.14 1.83 16 14 C 0.06 1.64 5.45 85.56 0.47 2.11 16 15 C 0.45 19.89 7.47 87.66 0.66 20.55 16 16 O -0.61 -33.66 13.91 -3.06 -0.04 -33.70 16 17 N -0.59 -27.41 5.09 -306.99 -1.56 -28.97 16 18 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 19 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 20 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 21 N -0.94 -56.70 13.96 21.66 0.30 -56.40 16 22 Si 0.97 38.20 27.74 68.60 1.90 40.11 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 26 N -0.43 -8.07 11.54 -172.61 -1.99 -10.06 16 27 O 0.09 1.37 11.19 71.26 0.80 2.16 16 28 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.42 2.77 8.47 -92.72 -0.79 1.99 16 35 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 36 H 0.06 1.42 6.55 -2.39 -0.02 1.41 16 37 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.11 1.38 7.93 -2.39 -0.02 1.36 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 2.11 5.83 -2.38 -0.01 2.10 16 41 H 0.07 2.00 6.47 -2.39 -0.02 1.99 16 42 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.13 2.76 7.93 -2.39 -0.02 2.74 16 44 H 0.39 14.69 5.76 -92.71 -0.53 14.15 16 45 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -92.18 385.68 -0.59 -92.77 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.33 Total: 26.97 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 7.51 Total: 25.48 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -10.00 Total: -128.19 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: 0.32 Total: -57.15 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -92.18 -0.59 -92.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480877146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.884 kcal (2) G-P(sol) polarization free energy of solvation -92.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds