Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46711 * 2 1 4 4 N 1.46504 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99727 * 269.99744 * 4 3 2 6 6 H 1.07997 * 120.00178 * 38.13249 * 5 4 3 7 7 C 1.38812 * 119.99877 * 218.12752 * 5 4 3 8 8 N 1.31616 * 120.00116 * 21.28800 * 7 5 4 9 9 Si 1.86807 * 120.00032 * 201.28163 * 7 5 4 10 10 H 1.48495 * 109.46678 * 90.00511 * 9 7 5 11 11 H 1.48500 * 109.46995 * 210.00197 * 9 7 5 12 12 H 1.48494 * 109.47073 * 330.00308 * 9 7 5 13 13 C 1.46499 * 120.00189 * 89.99638 * 4 3 2 14 14 C 1.53003 * 109.47368 * 264.50186 * 13 4 3 15 15 N 1.46497 * 109.46904 * 179.97438 * 14 13 4 16 16 C 1.34776 * 119.99267 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00706 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99737 * 180.02562 * 16 15 14 19 19 N 1.46496 * 109.47219 * 180.02562 * 18 16 15 20 20 C 1.35063 * 125.56738 * 90.02558 * 19 18 16 21 21 O 1.21294 * 127.28453 * 359.97196 * 20 19 18 22 22 C 1.49987 * 105.43080 * 179.97438 * 20 19 18 23 23 O 1.21292 * 127.27879 * 180.02562 * 22 20 19 24 24 N 1.35062 * 105.43173 * 0.02562 * 22 20 19 25 25 C 1.46497 * 125.56583 * 179.73713 * 24 22 20 26 26 C 1.34279 * 108.86860 * 359.97438 * 24 22 20 27 27 O 1.21477 * 124.30151 * 179.97438 * 26 24 22 28 28 H 1.09000 * 109.46869 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.47216 * 60.00441 * 1 2 3 30 30 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 239.99884 * 2 1 3 32 32 H 1.09000 * 109.47216 * 119.99559 * 2 1 3 33 33 H 1.09000 * 109.47548 * 60.00300 * 3 2 1 34 34 H 1.09003 * 109.47395 * 299.99919 * 3 2 1 35 35 H 0.96996 * 120.00238 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46958 * 144.50049 * 13 4 3 37 37 H 1.09000 * 109.47204 * 24.50714 * 13 4 3 38 38 H 1.08999 * 109.46626 * 59.99528 * 14 13 4 39 39 H 1.08998 * 109.46900 * 300.00249 * 14 13 4 40 40 H 0.96990 * 120.00349 * 0.02562 * 15 14 13 41 41 H 1.09002 * 109.46836 * 59.99976 * 18 16 15 42 42 H 1.08995 * 109.46868 * 300.00601 * 18 16 15 43 43 H 1.09002 * 109.46881 * 0.02562 * 25 24 22 44 44 H 1.09000 * 109.47545 * 120.02183 * 25 24 22 45 45 H 1.09001 * 109.46959 * 240.02117 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5892 3.1901 0.4961 9 14 6.5945 1.7568 2.6445 10 1 7.5729 0.7743 2.1131 11 1 7.3094 2.9871 3.0693 12 1 5.8855 1.1690 3.8093 13 6 4.2370 1.4427 -1.2696 14 6 4.6116 0.0069 -1.6425 15 7 5.3431 0.0071 -2.9118 16 6 5.7770 -1.1547 -3.4395 17 8 5.5616 -2.2003 -2.8639 18 6 6.5300 -1.1546 -4.7450 19 7 6.8886 -2.5293 -5.1021 20 6 6.1338 -3.3716 -5.8404 21 8 5.0469 -3.1469 -6.3297 22 6 6.9239 -4.6435 -5.9271 23 8 6.6112 -5.6649 -6.5019 24 7 8.0570 -4.4110 -5.2300 25 6 9.1447 -5.3711 -5.0269 26 6 8.0215 -3.1578 -4.7489 27 8 8.9020 -2.6566 -4.0788 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4038 3.7090 0.5856 36 1 5.1432 2.0395 -1.1662 37 1 3.6085 1.8690 -2.0516 38 1 3.7053 -0.5898 -1.7458 39 1 5.2401 -0.4194 -0.8606 40 1 5.5157 0.8432 -3.3720 41 1 7.4361 -0.5575 -4.6417 42 1 5.9014 -0.7286 -5.5269 43 1 8.9003 -6.3082 -5.5272 44 1 10.0680 -4.9675 -5.4425 45 1 9.2752 -5.5521 -3.9599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481148774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -68.870115 kcal Electronic energy + Delta-G solvation = -29947.286379 eV Core-core repulsion = 25581.964250 eV Total energy + Delta-G solvation = -4365.322129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.68328 -39.80075 -39.51889 -38.86215 -36.78470 -36.56452 -35.54745 -34.37475 -32.93356 -31.18981 -30.59240 -28.51312 -26.90201 -25.95239 -25.60076 -23.57541 -22.47321 -22.11435 -21.03713 -20.60094 -20.06592 -18.36686 -18.26532 -17.44551 -17.12332 -16.92268 -16.47191 -16.23922 -15.65677 -15.40181 -15.12265 -14.98017 -14.90543 -14.71650 -14.36193 -13.97299 -13.59075 -13.50483 -13.21026 -13.13768 -13.05567 -12.98579 -12.78742 -12.27778 -11.63404 -11.54101 -11.37555 -11.21754 -10.98157 -10.90526 -10.78676 -10.55188 -10.48683 -10.43176 -10.38518 -10.12170 -9.95485 -9.81427 -9.57251 -8.69309 -8.54429 -6.66979 -5.86812 -3.48404 -0.04518 1.34881 1.65282 2.18056 2.20981 2.64001 3.30308 3.35639 3.40939 3.43333 3.52446 4.16983 4.41997 4.60688 4.62803 4.79732 4.82237 4.85186 4.92752 5.13397 5.23073 5.26998 5.43397 5.63083 5.72302 5.96549 6.05884 6.13581 6.19582 6.25347 6.28515 6.37135 6.48367 6.57873 6.62124 6.70454 6.79705 6.92851 6.95146 7.12888 7.16659 7.47360 7.69561 7.76869 8.30656 8.43853 9.09774 9.71246 10.29059 11.11603 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.002902 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.937948 B = 9645.165400 C =11043.337530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.710 5.710 16 C 0.492 3.508 17 O -0.538 6.538 18 C 0.100 3.900 19 N -0.557 5.557 20 C 0.513 3.487 21 O -0.406 6.406 22 C 0.514 3.486 23 O -0.414 6.414 24 N -0.575 5.575 25 C 0.090 3.910 26 C 0.715 3.285 27 O -0.479 6.479 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -9.832 -14.811 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.026 4.026 15 N -0.361 5.361 16 C 0.275 3.725 17 O -0.415 6.415 18 C -0.024 4.024 19 N -0.305 5.305 20 C 0.294 3.706 21 O -0.270 6.270 22 C 0.295 3.705 23 O -0.279 6.279 24 N -0.324 5.324 25 C -0.050 4.050 26 C 0.418 3.582 27 O -0.347 6.347 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.234 0.766 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.402 -10.579 -14.558 18.527 hybrid contribution 0.837 0.126 0.589 1.032 sum 5.239 -10.454 -13.969 18.217 Atomic orbital electron populations 1.21722 0.97274 1.00432 1.01047 1.22202 0.93907 1.00961 1.01471 1.20958 0.84959 0.92871 0.99068 1.43602 0.99455 1.85023 1.01796 1.19032 1.06107 1.22755 0.91337 0.92065 1.25184 1.00783 0.94568 0.97964 1.69963 1.25982 1.17022 1.39844 0.86400 0.81666 0.77573 0.81841 1.21171 1.21644 1.20134 1.21085 0.99668 0.91549 0.86940 1.22519 0.94919 1.02741 0.82466 1.46028 1.56717 1.08020 1.25335 1.20554 0.80305 0.85015 0.86623 1.90731 1.57169 1.31501 1.62115 1.21688 1.03520 0.79395 0.97823 1.46119 1.19195 1.15591 1.49642 1.20815 0.85650 0.85584 0.78577 1.90855 1.16105 1.77712 1.42319 1.20823 0.81885 0.89089 0.78738 1.90842 1.70874 1.28322 1.37855 1.46534 1.21369 1.14499 1.50029 1.21992 0.87341 0.91274 1.04422 1.15789 0.82395 0.80721 0.79304 1.91053 1.38741 1.68121 1.36792 0.93172 0.93416 0.93810 0.93049 0.92402 0.93206 0.94922 0.93475 0.88394 0.95071 0.92789 0.91457 0.76600 0.84806 0.85022 0.88168 0.89559 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.61 6.26 -26.73 -0.17 -2.78 16 3 C 0.15 2.99 5.71 -4.04 -0.02 2.97 16 4 N -0.58 -13.59 2.43 -173.23 -0.42 -14.01 16 5 C -0.26 -6.89 9.42 -15.06 -0.14 -7.03 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.41 5.00 -17.43 -0.09 0.33 16 8 N -0.89 -24.05 11.43 55.49 0.63 -23.41 16 9 Si 0.90 21.14 29.60 -169.99 -5.03 16.11 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.14 2.85 5.50 -4.04 -0.02 2.83 16 14 C 0.10 1.91 5.97 -4.04 -0.02 1.89 16 15 N -0.71 -10.70 5.56 -60.29 -0.33 -11.03 16 16 C 0.49 7.47 7.90 -10.98 -0.09 7.39 16 17 O -0.54 -10.56 16.43 5.56 0.09 -10.47 16 18 C 0.10 1.01 6.34 -5.19 -0.03 0.97 16 19 N -0.56 -6.36 2.15 -122.51 -0.26 -6.63 16 20 C 0.51 6.14 8.31 -11.20 -0.09 6.04 16 21 O -0.41 -5.68 17.88 5.55 0.10 -5.58 16 22 C 0.51 5.58 8.31 -11.20 -0.09 5.49 16 23 O -0.41 -5.12 17.65 5.55 0.10 -5.02 16 24 N -0.57 -5.47 3.06 -128.66 -0.39 -5.87 16 25 C 0.09 0.52 10.95 59.85 0.66 1.18 16 26 C 0.72 8.31 8.32 -87.80 -0.73 7.58 16 27 O -0.48 -6.67 17.38 5.39 0.09 -6.57 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.94 6.65 -51.93 -0.35 0.60 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.10 2.33 5.53 -51.93 -0.29 2.04 16 37 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 38 H 0.05 1.09 6.65 -51.93 -0.35 0.74 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.40 4.69 8.47 -40.82 -0.35 4.34 16 41 H 0.13 1.03 7.98 -51.93 -0.41 0.62 16 42 H 0.13 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.10 0.45 7.76 -51.93 -0.40 0.05 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -34.17 390.89 -6.32 -40.49 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.30 Total: 1.03 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: -0.48 Total: 25.08 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.78 Total: -60.95 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: 0.38 Total: -27.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.17 -6.32 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481148774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.378 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds