Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46711 * 2 1 4 4 N 1.46504 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99727 * 269.99744 * 4 3 2 6 6 H 1.07997 * 120.00178 * 38.13249 * 5 4 3 7 7 C 1.38812 * 119.99877 * 218.12752 * 5 4 3 8 8 N 1.31616 * 120.00116 * 21.28800 * 7 5 4 9 9 Si 1.86807 * 120.00032 * 201.28163 * 7 5 4 10 10 H 1.48495 * 109.46678 * 90.00511 * 9 7 5 11 11 H 1.48500 * 109.46995 * 210.00197 * 9 7 5 12 12 H 1.48494 * 109.47073 * 330.00308 * 9 7 5 13 13 C 1.46499 * 120.00189 * 89.99638 * 4 3 2 14 14 C 1.53003 * 109.47368 * 264.50186 * 13 4 3 15 15 N 1.46497 * 109.46904 * 179.97438 * 14 13 4 16 16 C 1.34776 * 119.99267 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00706 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99737 * 180.02562 * 16 15 14 19 19 N 1.46496 * 109.47219 * 180.02562 * 18 16 15 20 20 C 1.35063 * 125.56738 * 90.02558 * 19 18 16 21 21 O 1.21294 * 127.28453 * 359.97196 * 20 19 18 22 22 C 1.49987 * 105.43080 * 179.97438 * 20 19 18 23 23 O 1.21292 * 127.27879 * 180.02562 * 22 20 19 24 24 N 1.35062 * 105.43173 * 0.02562 * 22 20 19 25 25 C 1.46497 * 125.56583 * 179.73713 * 24 22 20 26 26 C 1.34279 * 108.86860 * 359.97438 * 24 22 20 27 27 O 1.21477 * 124.30151 * 179.97438 * 26 24 22 28 28 H 1.09000 * 109.46869 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.47216 * 60.00441 * 1 2 3 30 30 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 239.99884 * 2 1 3 32 32 H 1.09000 * 109.47216 * 119.99559 * 2 1 3 33 33 H 1.09000 * 109.47548 * 60.00300 * 3 2 1 34 34 H 1.09003 * 109.47395 * 299.99919 * 3 2 1 35 35 H 0.96996 * 120.00238 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46958 * 144.50049 * 13 4 3 37 37 H 1.09000 * 109.47204 * 24.50714 * 13 4 3 38 38 H 1.08999 * 109.46626 * 59.99528 * 14 13 4 39 39 H 1.08998 * 109.46900 * 300.00249 * 14 13 4 40 40 H 0.96990 * 120.00349 * 0.02562 * 15 14 13 41 41 H 1.09002 * 109.46836 * 59.99976 * 18 16 15 42 42 H 1.08995 * 109.46868 * 300.00601 * 18 16 15 43 43 H 1.09002 * 109.46881 * 0.02562 * 25 24 22 44 44 H 1.09000 * 109.47545 * 120.02183 * 25 24 22 45 45 H 1.09001 * 109.46959 * 240.02117 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5892 3.1901 0.4961 9 14 6.5945 1.7568 2.6445 10 1 7.5729 0.7743 2.1131 11 1 7.3094 2.9871 3.0693 12 1 5.8855 1.1690 3.8093 13 6 4.2370 1.4427 -1.2696 14 6 4.6116 0.0069 -1.6425 15 7 5.3431 0.0071 -2.9118 16 6 5.7770 -1.1547 -3.4395 17 8 5.5616 -2.2003 -2.8639 18 6 6.5300 -1.1546 -4.7450 19 7 6.8886 -2.5293 -5.1021 20 6 6.1338 -3.3716 -5.8404 21 8 5.0469 -3.1469 -6.3297 22 6 6.9239 -4.6435 -5.9271 23 8 6.6112 -5.6649 -6.5019 24 7 8.0570 -4.4110 -5.2300 25 6 9.1447 -5.3711 -5.0269 26 6 8.0215 -3.1578 -4.7489 27 8 8.9020 -2.6566 -4.0788 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4038 3.7090 0.5856 36 1 5.1432 2.0395 -1.1662 37 1 3.6085 1.8690 -2.0516 38 1 3.7053 -0.5898 -1.7458 39 1 5.2401 -0.4194 -0.8606 40 1 5.5157 0.8432 -3.3720 41 1 7.4361 -0.5575 -4.6417 42 1 5.9014 -0.7286 -5.5269 43 1 8.9003 -6.3082 -5.5272 44 1 10.0680 -4.9675 -5.4425 45 1 9.2752 -5.5521 -3.9599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481148774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = -92.977540 kcal Electronic energy + Delta-G solvation = -29948.331756 eV Core-core repulsion = 25581.964250 eV Total energy + Delta-G solvation = -4366.367505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.58196 -40.94950 -40.50719 -39.91902 -38.26541 -37.73891 -36.45268 -35.80204 -34.61817 -32.72975 -31.72990 -29.83381 -27.86842 -27.34710 -26.85825 -25.12681 -23.43812 -23.08371 -22.56320 -21.96666 -21.55024 -19.40949 -19.17179 -18.65308 -18.36918 -17.91873 -17.83121 -17.21910 -17.03784 -16.59105 -16.48957 -16.28609 -15.95538 -15.90558 -15.77855 -15.56997 -14.87152 -14.63845 -14.52965 -14.29462 -14.21813 -14.04516 -13.60650 -13.42808 -13.32816 -13.05733 -12.91730 -12.65603 -12.52328 -12.34091 -12.23833 -12.02195 -11.99909 -11.88341 -11.68517 -11.47376 -11.34516 -11.20921 -10.83147 -10.55490 -10.10915 -8.59241 -7.84614 -5.50340 -0.97522 0.49494 0.80888 1.26906 1.31053 1.42669 1.44397 1.47471 1.53263 2.14442 2.49190 2.61162 3.20776 3.39973 3.51160 3.78497 3.95499 4.00083 4.11037 4.18686 4.21169 4.33338 4.38759 4.41736 4.52382 4.57459 4.66953 4.73494 4.74308 4.85827 4.99269 5.15375 5.22054 5.25399 5.29893 5.35759 5.41507 5.42702 5.61007 5.65217 5.76348 5.89768 6.26670 6.43241 6.50004 7.10748 7.16827 7.82334 8.34136 9.08827 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.002902 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.937948 B = 9645.165400 C =11043.337530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.048 0.952 7 C -0.023 4.023 8 N -0.906 5.906 9 Si 0.946 3.054 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.702 5.702 16 C 0.488 3.512 17 O -0.587 6.587 18 C 0.106 3.894 19 N -0.558 5.558 20 C 0.516 3.484 21 O -0.428 6.428 22 C 0.523 3.477 23 O -0.428 6.428 24 N -0.566 5.566 25 C 0.080 3.920 26 C 0.717 3.283 27 O -0.502 6.502 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.419 0.581 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -10.019 -16.221 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.066 0.934 7 C -0.221 4.221 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.218 1.218 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.015 3.985 14 C -0.005 4.005 15 N -0.354 5.354 16 C 0.273 3.727 17 O -0.468 6.468 18 C -0.018 4.018 19 N -0.306 5.306 20 C 0.297 3.703 21 O -0.293 6.293 22 C 0.304 3.696 23 O -0.294 6.294 24 N -0.315 5.315 25 C -0.058 4.058 26 C 0.421 3.579 27 O -0.371 6.371 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.256 0.744 41 H 0.182 0.818 42 H 0.188 0.812 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.624 -10.757 -15.993 19.821 hybrid contribution 0.752 0.158 1.024 1.281 sum 5.376 -10.599 -14.969 19.113 Atomic orbital electron populations 1.21658 0.94289 1.01717 1.02066 1.22027 0.96425 0.98868 1.00134 1.21060 0.83336 0.94347 0.99215 1.43843 1.00848 1.85321 1.01751 1.19120 1.06704 1.22208 0.92146 0.93399 1.25689 1.01951 0.94717 0.99792 1.70040 1.26236 1.17638 1.41004 0.85611 0.79750 0.77067 0.80089 1.21803 1.21342 1.19841 1.20973 0.98860 0.91986 0.86674 1.21913 0.94142 1.01079 0.83401 1.45805 1.56257 1.09370 1.23968 1.21445 0.79535 0.83865 0.87846 1.90712 1.58995 1.33159 1.63886 1.21914 1.04804 0.79398 0.95639 1.46189 1.19048 1.16086 1.49275 1.20973 0.85307 0.85964 0.78043 1.90842 1.16995 1.78217 1.43293 1.20583 0.81982 0.88453 0.78575 1.90841 1.71211 1.28725 1.38650 1.46612 1.21587 1.14216 1.49058 1.22350 0.87044 0.91273 1.05110 1.15886 0.82080 0.81130 0.78840 1.91044 1.39529 1.68724 1.37827 0.92604 0.91955 0.92416 0.93613 0.94513 0.94354 0.93322 0.93611 0.90680 0.92965 0.93536 0.95472 0.74376 0.81784 0.81183 0.86610 0.87567 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.09 16 2 C -0.13 -4.78 6.26 30.60 0.19 -4.58 16 3 C 0.15 5.86 5.71 86.38 0.49 6.35 16 4 N -0.60 -28.29 2.43 -701.99 -1.71 -30.00 16 5 C -0.27 -14.50 9.42 84.03 0.79 -13.71 16 6 H 0.05 2.64 7.92 -2.91 -0.02 2.61 16 7 C -0.02 -1.22 5.00 84.86 0.42 -0.80 16 8 N -0.91 -49.51 11.43 21.65 0.25 -49.26 16 9 Si 0.95 43.98 29.60 68.60 2.03 46.01 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.14 5.99 5.50 86.38 0.47 6.47 16 14 C 0.12 4.76 5.97 86.38 0.52 5.27 16 15 N -0.70 -20.50 5.56 -463.06 -2.57 -23.08 16 16 C 0.49 14.31 7.90 87.66 0.69 15.00 16 17 O -0.59 -23.14 16.43 -3.03 -0.05 -23.19 16 18 C 0.11 1.87 6.34 85.64 0.54 2.41 16 19 N -0.56 -11.80 2.15 -778.31 -1.67 -13.48 16 20 C 0.52 11.69 8.31 87.39 0.73 12.41 16 21 O -0.43 -11.50 17.88 -3.07 -0.05 -11.55 16 22 C 0.52 10.72 8.31 87.39 0.73 11.45 16 23 O -0.43 -10.10 17.65 -3.07 -0.05 -10.16 16 24 N -0.57 -9.91 3.06 -797.77 -2.44 -12.35 16 25 C 0.08 0.79 10.95 127.77 1.40 2.19 16 26 C 0.72 15.62 8.32 179.36 1.49 17.11 16 27 O -0.50 -13.26 17.38 -3.64 -0.06 -13.32 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.05 1.66 6.65 -2.39 -0.02 1.64 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 35 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.08 3.59 5.53 -2.39 -0.01 3.57 16 37 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.05 1.89 6.65 -2.39 -0.02 1.88 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.42 9.04 8.47 -92.72 -0.79 8.25 16 41 H 0.16 1.99 7.98 -2.39 -0.02 1.97 16 42 H 0.17 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.12 0.80 7.76 -2.39 -0.02 0.78 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.32 390.89 3.09 -72.23 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.25 Total: 11.68 kcal Atomic # 6 Polarization: 47.28 SS G_CDS: 9.18 Total: 56.47 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.15 Total: -128.16 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.22 Total: -58.22 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.32 3.09 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481148774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.751 kcal (2) G-P(sol) polarization free energy of solvation -75.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds