Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 N 1.46495 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99678 * 85.11064 * 4 3 2 6 6 O 1.21623 * 119.99807 * 186.29360 * 5 4 3 7 7 C 1.47300 * 120.00313 * 6.58063 * 5 4 3 8 8 C 1.41343 * 126.43153 * 342.88453 * 7 5 4 9 9 N 1.30411 * 108.04618 * 180.02562 * 8 7 5 10 10 N 1.39926 * 108.96278 * 359.97438 * 9 8 7 11 11 C 1.46495 * 125.75209 * 180.02562 * 10 9 8 12 12 C 1.34350 * 108.49647 * 359.73331 * 10 9 8 13 13 Cl 1.73608 * 126.31842 * 180.28272 * 12 10 9 14 14 C 1.46496 * 120.00305 * 265.10869 * 4 3 2 15 15 H 1.08999 * 110.64194 * 13.87326 * 14 4 3 16 16 C 1.55160 * 110.72218 * 250.53382 * 14 4 3 17 17 C 1.54902 * 101.58281 * 277.13686 * 16 14 4 18 18 N 1.47425 * 104.83542 * 322.99184 * 17 16 14 19 19 C 1.36935 * 125.65156 * 204.09492 * 18 17 16 20 20 H 1.07990 * 120.00351 * 156.60334 * 19 18 17 21 21 C 1.38818 * 119.99608 * 336.59743 * 19 18 17 22 22 N 1.31622 * 120.00036 * 359.56165 * 21 19 18 23 23 Si 1.86799 * 120.00041 * 179.55530 * 21 19 18 24 24 H 1.48503 * 109.46981 * 94.97040 * 23 21 19 25 25 H 1.48499 * 109.47323 * 214.97324 * 23 21 19 26 26 H 1.48506 * 109.46775 * 334.97366 * 23 21 19 27 27 C 1.47021 * 108.70272 * 24.12610 * 18 17 16 28 28 H 1.08996 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47222 * 300.00312 * 1 2 3 30 30 H 1.08995 * 109.47084 * 60.00221 * 1 2 3 31 31 H 1.08992 * 109.47436 * 239.99506 * 2 1 3 32 32 H 1.09000 * 109.46636 * 119.99626 * 2 1 3 33 33 H 1.09000 * 109.47038 * 59.99389 * 3 2 1 34 34 H 1.09000 * 109.46488 * 299.99878 * 3 2 1 35 35 H 1.08003 * 125.97705 * 0.02562 * 8 7 5 36 36 H 1.09004 * 109.47003 * 89.97734 * 11 10 9 37 37 H 1.08996 * 109.47327 * 209.97865 * 11 10 9 38 38 H 1.09002 * 109.46877 * 329.97806 * 11 10 9 39 39 H 1.08996 * 111.00244 * 35.21771 * 16 14 4 40 40 H 1.09005 * 111.00106 * 159.06348 * 16 14 4 41 41 H 1.09003 * 110.36796 * 204.14978 * 17 16 14 42 42 H 1.09007 * 110.45860 * 81.87692 * 17 16 14 43 43 H 0.96995 * 119.99370 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.88476 * 239.52913 * 27 18 17 45 45 H 1.09003 * 109.88393 * 118.35732 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.3428 -1.1621 6 8 5.3901 1.2275 -1.1549 7 6 3.4506 1.3799 -2.4417 8 6 2.0638 1.1768 -2.6241 9 7 1.8031 1.2886 -3.8970 10 7 2.9915 1.5651 -4.5820 11 6 3.1202 1.7617 -6.0279 12 6 3.9937 1.6262 -3.6893 13 17 5.6633 1.9499 -4.0382 14 6 4.2370 1.5508 1.2649 15 1 3.5712 1.3779 2.1105 16 6 4.9304 2.9340 1.3811 17 6 6.2302 2.6994 0.5719 18 7 6.6214 1.3118 0.8801 19 6 7.8895 0.8022 0.7940 20 1 8.1624 -0.0677 1.3729 21 6 8.8242 1.4039 -0.0374 22 7 8.4891 2.4589 -0.7496 23 14 10.5577 0.7163 -0.1455 24 1 10.6509 -0.2119 -1.3010 25 1 11.5220 1.8310 -0.3269 26 1 10.8783 -0.0169 1.1055 27 6 5.4244 0.5655 1.2946 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.3457 0.9660 -1.8455 36 1 2.9879 2.8176 -6.2642 37 1 4.1092 1.4380 -6.3521 38 1 2.3590 1.1759 -6.5434 39 1 4.3221 3.7154 0.9256 40 1 5.1551 3.1723 2.4208 41 1 7.0074 3.3929 0.8929 42 1 6.0399 2.8116 -0.4956 43 1 9.1424 2.8794 -1.3302 44 1 5.5600 0.1787 2.3046 45 1 5.2416 -0.2562 0.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481402403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 122.989447 kcal Electronic energy + Delta-G solvation = -29549.177113 eV Core-core repulsion = 25632.883803 eV Total energy + Delta-G solvation = -3916.293309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.45331 -39.50337 -36.63499 -36.09992 -35.92745 -33.37493 -32.78492 -31.49943 -29.94554 -28.83195 -27.67068 -26.80280 -25.83765 -24.20730 -22.63126 -21.58429 -21.55086 -20.20991 -19.83156 -18.54841 -17.09881 -16.61057 -16.35772 -15.88652 -15.80261 -14.82759 -14.76804 -14.36786 -14.03277 -13.87989 -13.57000 -13.29471 -13.08938 -12.97063 -12.91416 -12.71053 -11.99514 -11.85730 -11.84007 -11.74406 -11.51429 -11.49486 -11.33526 -11.29284 -10.81944 -10.68246 -10.61284 -10.57837 -10.57146 -9.91543 -9.76900 -9.66258 -9.45549 -9.36319 -8.68750 -8.41772 -8.24015 -7.70354 -6.18544 -5.41857 -2.74657 1.48672 1.57789 2.27442 2.62018 3.48640 3.54969 3.60715 3.61331 3.97831 4.35557 4.75386 4.82950 4.91040 4.93506 4.95489 5.08891 5.19042 5.26925 5.31009 5.35446 5.45143 5.57364 5.60415 5.68478 5.78080 5.85646 5.92788 5.93685 6.02484 6.16340 6.30334 6.32648 6.45228 6.51922 6.65735 6.75000 6.92302 7.01073 7.40798 7.44744 7.75031 8.05234 8.07951 8.23493 8.66011 9.16669 9.54809 10.17413 10.93760 11.70763 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005452 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.821621 B = 5134.289958 C = 7106.843505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.157 4.157 3 C 0.094 3.906 4 N -0.607 5.607 5 C 0.545 3.455 6 O -0.417 6.417 7 C -0.253 4.253 8 C 0.053 3.947 9 N -0.287 5.287 10 N -0.362 5.362 11 C 0.093 3.907 12 C 0.170 3.830 13 Cl 0.044 6.956 14 C 0.142 3.858 15 H 0.080 0.920 16 C -0.163 4.163 17 C 0.179 3.821 18 N -0.572 5.572 19 C -0.220 4.220 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.139 3.861 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.244 0.756 44 H 0.015 0.985 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -0.234 -5.590 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C -0.030 4.030 4 N -0.343 5.343 5 C 0.330 3.670 6 O -0.285 6.285 7 C -0.269 4.269 8 C -0.132 4.132 9 N -0.109 5.109 10 N -0.146 5.146 11 C -0.048 4.048 12 C 0.013 3.987 13 Cl 0.072 6.928 14 C 0.038 3.962 15 H 0.098 0.902 16 C -0.203 4.203 17 C 0.055 3.945 18 N -0.298 5.298 19 C -0.350 4.350 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.541 5.541 23 Si 0.723 3.277 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.209 1.209 27 C 0.012 3.988 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.033 0.967 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.108 -0.227 -6.801 19.345 hybrid contribution 1.551 -0.337 0.239 1.605 sum -16.557 -0.564 -6.561 17.819 Atomic orbital electron populations 1.21779 0.95351 1.02096 1.01894 1.22197 0.95697 0.98049 1.03633 1.22047 0.81427 0.96220 1.03271 1.47555 1.04900 1.75855 1.06007 1.17217 0.87483 0.80429 0.81910 1.91329 1.10602 1.41076 1.85471 1.20224 0.93742 1.19190 0.93710 1.25201 0.95641 0.98106 0.94246 1.77231 1.03183 1.23939 1.06544 1.48462 1.04263 1.54375 1.07458 1.22007 1.04562 1.03546 0.74643 1.22230 0.85733 1.00546 0.90168 1.98519 1.06659 1.92763 1.94830 1.21994 0.93206 0.97251 0.83730 0.90158 1.23518 1.00555 0.95246 1.00932 1.21512 0.89669 0.86271 0.97088 1.43983 1.01581 1.05485 1.78714 1.18768 0.85812 1.11611 1.18767 0.91952 1.24960 0.97847 0.98904 0.97389 1.69968 1.32449 1.21937 1.29795 0.86416 0.85633 0.78079 0.77536 1.22020 1.22142 1.20865 1.21401 0.87385 0.93854 0.96202 0.92353 0.92310 0.92641 0.91172 0.90810 0.90504 0.89723 0.76704 0.90065 0.89107 0.88553 0.92571 0.91965 0.94460 0.92161 0.94574 0.96729 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.76 37.16 0.36 -0.78 16 2 C -0.16 -1.58 5.24 -26.73 -0.14 -1.72 16 3 C 0.09 1.08 4.89 -4.04 -0.02 1.06 16 4 N -0.61 -9.94 2.52 -165.33 -0.42 -10.35 16 5 C 0.54 10.69 6.67 -12.57 -0.08 10.60 16 6 O -0.42 -10.22 9.31 5.26 0.05 -10.17 16 7 C -0.25 -4.32 5.92 -105.02 -0.62 -4.94 16 8 C 0.05 0.74 8.80 -16.97 -0.15 0.59 16 9 N -0.29 -4.04 12.49 30.87 0.39 -3.66 16 10 N -0.36 -5.00 3.98 -64.32 -0.26 -5.25 16 11 C 0.09 0.84 11.27 59.84 0.67 1.51 16 12 C 0.17 2.84 7.52 -16.44 -0.12 2.71 16 13 Cl 0.04 0.79 27.52 -51.86 -1.43 -0.64 16 14 C 0.14 2.52 3.66 -66.09 -0.24 2.28 16 15 H 0.08 1.17 7.96 -51.93 -0.41 0.75 16 16 C -0.16 -3.18 6.69 -24.58 -0.16 -3.34 16 17 C 0.18 4.56 4.38 -2.53 -0.01 4.55 16 18 N -0.57 -15.35 2.22 -170.07 -0.38 -15.73 16 19 C -0.22 -6.51 10.18 -15.06 -0.15 -6.66 16 20 H 0.06 1.83 7.83 -52.49 -0.41 1.41 16 21 C 0.01 0.21 5.45 -17.43 -0.10 0.11 16 22 N -0.90 -27.35 10.98 55.49 0.61 -26.74 16 23 Si 0.89 23.25 29.55 -169.99 -5.02 18.23 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.14 3.09 5.99 -3.06 -0.02 3.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 7.24 -51.93 -0.38 0.00 16 31 H 0.07 0.81 6.67 -51.93 -0.35 0.46 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 7.98 -51.93 -0.41 0.33 16 34 H 0.09 0.93 4.47 -51.93 -0.23 0.70 16 35 H 0.22 2.36 2.44 -52.48 -0.13 2.23 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.74 7.78 -51.93 -0.40 0.33 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 42 H 0.06 1.70 5.20 -51.92 -0.27 1.43 16 43 H 0.24 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.58 7.17 -51.93 -0.37 0.21 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -35.65 362.07 -8.06 -43.71 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.28 Total: -3.91 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.78 Total: 9.05 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.05 Total: -61.73 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.05 Total: -10.17 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -1.43 Total: -0.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.65 -8.06 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481402403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.700 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds