Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29936 * 125.37729 * 2 1 4 4 C 1.36072 * 108.47909 * 179.97438 * 3 2 1 5 5 C 1.47415 * 126.44870 * 179.97438 * 4 3 2 6 6 O 1.21610 * 120.00159 * 186.14420 * 5 4 3 7 7 N 1.34779 * 120.00327 * 6.14291 * 5 4 3 8 8 C 1.46498 * 119.99597 * 356.20992 * 7 5 4 9 9 C 1.46499 * 120.00419 * 176.20255 * 7 5 4 10 10 C 1.53006 * 109.47032 * 90.00000 * 9 7 5 11 11 H 1.09003 * 109.46550 * 60.00302 * 10 9 7 12 12 O 1.42896 * 109.46918 * 300.00280 * 10 9 7 13 13 C 1.52999 * 109.47091 * 180.02562 * 10 9 7 14 14 N 1.46900 * 109.46829 * 185.00198 * 13 10 9 15 15 C 1.46903 * 110.99611 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.46632 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00281 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99445 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99559 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00404 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99930 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99933 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47406 * 89.99428 * 23 21 19 25 25 H 1.48493 * 109.47140 * 209.99969 * 23 21 19 26 26 H 1.48503 * 109.46886 * 329.99856 * 23 21 19 27 27 C 1.36088 * 107.10046 * 0.23312 * 4 3 2 28 28 O 1.34056 * 125.38442 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47254 * 89.99889 * 1 2 3 30 30 H 1.09000 * 109.47026 * 209.99723 * 1 2 3 31 31 H 1.09000 * 109.47477 * 329.99638 * 1 2 3 32 32 H 1.09001 * 109.46825 * 275.65908 * 8 7 5 33 33 H 1.08997 * 109.47638 * 35.65589 * 8 7 5 34 34 H 1.09003 * 109.47102 * 155.66209 * 8 7 5 35 35 H 1.09004 * 109.46685 * 330.00705 * 9 7 5 36 36 H 1.08992 * 109.47349 * 210.00759 * 9 7 5 37 37 H 0.96697 * 114.00353 * 299.99456 * 12 10 9 38 38 H 1.08997 * 109.47157 * 64.99941 * 13 10 9 39 39 H 1.09002 * 109.46741 * 305.00357 * 13 10 9 40 40 H 1.00895 * 110.99953 * 56.05197 * 14 13 10 41 41 H 1.09001 * 109.46808 * 299.99680 * 15 14 13 42 42 H 1.08993 * 109.46956 * 59.99946 * 15 14 13 43 43 H 0.96999 * 120.00101 * 0.02562 * 18 16 15 44 44 H 0.96999 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.07997 * 126.52831 * 179.77151 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7438 1.5439 0.0003 6 8 5.8568 1.0668 -0.1119 7 7 4.5917 2.8774 0.1242 8 6 3.2484 3.4596 0.1757 9 6 5.7696 3.7445 0.2076 10 6 6.1828 4.1802 -1.1997 11 1 5.3625 4.7254 -1.6667 12 8 6.4949 3.0266 -1.9831 13 6 7.4133 5.0852 -1.1127 14 7 7.7382 5.5997 -2.4498 15 6 8.9177 6.4743 -2.4050 16 6 9.2192 6.9822 -3.7914 17 8 8.5207 6.6482 -4.7250 18 7 10.2653 7.8077 -3.9938 19 6 10.5400 8.2694 -5.2552 20 1 9.9180 7.9719 -6.0865 21 6 11.6187 9.1200 -5.4640 22 7 12.3758 9.4816 -4.4526 23 14 11.9926 9.7496 -7.1825 24 1 11.2630 11.0224 -7.4131 25 1 13.4527 9.9846 -7.3168 26 1 11.5592 8.7423 -8.1839 27 6 3.5660 -0.6969 -0.0044 28 8 2.2832 -1.0929 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.8770 3.6064 -0.8385 33 1 2.5808 2.7863 0.7132 34 1 3.2880 4.4196 0.6906 35 1 6.5898 3.1991 0.6745 36 1 5.5315 4.6243 0.8052 37 1 7.2177 2.4925 -1.6261 38 1 8.2581 4.5139 -0.7281 39 1 7.2040 5.9195 -0.4432 40 1 6.9478 6.0786 -2.8548 41 1 8.7192 7.3183 -1.7444 42 1 9.7727 5.9122 -2.0295 43 1 10.8241 8.0746 -3.2473 44 1 13.1286 10.0757 -4.5984 45 1 4.4361 -1.3367 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486272701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -80.092406 kcal Electronic energy + Delta-G solvation = -28671.631453 eV Core-core repulsion = 24305.822690 eV Total energy + Delta-G solvation = -4365.808764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.86842 -40.08835 -38.34450 -37.52185 -35.78282 -35.12168 -34.60308 -33.72576 -32.69674 -31.20119 -30.49614 -28.38035 -27.72666 -26.70549 -25.33900 -23.98182 -22.92456 -22.03102 -21.60892 -19.99245 -19.19696 -17.99485 -17.85640 -17.39129 -17.08209 -16.91035 -16.12774 -16.01183 -15.77486 -15.13686 -14.86595 -14.68733 -14.46326 -14.34663 -14.26048 -13.80872 -13.70007 -13.67075 -13.33008 -13.18202 -13.11954 -12.99047 -12.73762 -12.40853 -11.97657 -11.75140 -11.66116 -11.49063 -11.45315 -11.08849 -11.00100 -10.85890 -10.36294 -10.34683 -10.18883 -10.09059 -9.47177 -9.43746 -8.75372 -8.38690 -7.98472 -7.91182 -6.38147 -3.78687 0.72449 1.58292 2.13863 2.62207 3.00984 3.20694 3.28983 3.35663 3.40509 3.95302 4.07241 4.19483 4.30428 4.36664 4.54186 4.77167 4.81441 4.82357 4.93454 4.96719 4.99935 5.08522 5.16906 5.18196 5.25850 5.27011 5.33030 5.39359 5.42214 5.56451 5.60419 5.82691 5.89034 6.01306 6.03034 6.23848 6.30953 6.94887 7.13228 7.24619 7.58873 7.68548 7.84751 7.94409 8.10465 8.65691 9.21920 9.58452 10.10495 10.79715 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001615 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.137748 B =17333.714028 C =17483.060048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.193 3.807 3 N -0.459 5.459 4 C -0.066 4.066 5 C 0.606 3.394 6 O -0.531 6.531 7 N -0.593 5.593 8 C 0.072 3.928 9 C 0.083 3.917 10 C 0.098 3.902 11 H 0.095 0.905 12 O -0.538 6.538 13 C 0.030 3.970 14 N -0.658 5.658 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.013 3.987 28 O -0.197 6.197 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.376 0.624 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.349 0.651 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.581 -17.255 17.777 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.015 4.015 3 N -0.191 5.191 4 C -0.185 4.185 5 C 0.394 3.606 6 O -0.408 6.408 7 N -0.324 5.324 8 C -0.071 4.071 9 C -0.040 4.040 10 C 0.036 3.964 11 H 0.113 0.887 12 O -0.343 6.343 13 C -0.101 4.101 14 N -0.291 5.291 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.464 6.464 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.061 4.061 28 O -0.083 6.083 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.223 0.777 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.169 0.831 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -22.662 -17.312 16.534 32.964 hybrid contribution 1.059 0.685 0.426 1.331 sum -21.603 -16.628 16.959 32.106 Atomic orbital electron populations 1.20333 0.80876 1.05367 1.05103 1.26511 0.96782 0.78501 0.99715 1.70948 1.00818 1.28956 1.18339 1.21750 0.92064 0.93015 1.11702 1.16666 0.86114 0.81455 0.76398 1.90785 1.24675 1.75021 1.50303 1.47405 1.07787 1.05505 1.71702 1.22256 0.82750 0.99248 1.02798 1.22322 0.88710 0.94632 0.98345 1.22230 0.96346 0.87333 0.90459 0.88677 1.86602 1.57595 1.37811 1.52254 1.22627 0.98207 0.98060 0.91194 1.59934 1.07987 1.41745 1.19419 1.21688 0.94696 0.95147 0.96647 1.19818 0.84108 0.83586 0.89821 1.90535 1.51192 1.61061 1.43652 1.41859 1.26105 1.41821 1.10411 1.19717 1.11691 1.25048 0.86369 0.87931 1.25258 0.96017 0.97295 0.99416 1.69616 1.18252 1.35677 1.30895 0.85850 0.77353 0.79118 0.81924 1.20464 1.20940 1.19409 1.25278 0.84773 0.95649 1.00370 1.84392 1.16779 1.37953 1.69198 0.88555 0.89138 0.87844 0.92506 0.87932 0.91782 0.89291 0.89411 0.77663 0.90599 0.94831 0.83147 0.94038 0.89651 0.77489 0.91930 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 36.00 0.38 0.23 16 2 C 0.19 1.36 8.30 -13.08 -0.11 1.26 16 3 N -0.46 -4.24 7.84 -7.66 -0.06 -4.30 16 4 C -0.07 -0.69 6.67 -83.02 -0.55 -1.24 16 5 C 0.61 7.37 7.23 -12.52 -0.09 7.28 16 6 O -0.53 -7.48 15.05 -7.46 -0.11 -7.59 16 7 N -0.59 -6.22 2.83 -182.85 -0.52 -6.74 16 8 C 0.07 0.61 9.68 59.85 0.58 1.19 16 9 C 0.08 0.80 5.18 -4.04 -0.02 0.78 16 10 C 0.10 1.17 3.42 -26.73 -0.09 1.08 16 11 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 12 O -0.54 -8.15 12.01 -47.96 -0.58 -8.73 16 13 C 0.03 0.37 5.32 -3.82 -0.02 0.35 16 14 N -0.66 -11.30 6.07 -115.06 -0.70 -12.00 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.84 7.82 -10.98 -0.09 10.75 16 17 O -0.58 -16.50 15.78 5.55 0.09 -16.41 16 18 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 19 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 23 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 C 0.01 0.11 11.95 29.96 0.36 0.47 16 28 O -0.20 -1.53 10.73 6.51 0.07 -1.46 16 29 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.86 5.25 -51.93 -0.27 0.59 16 34 H 0.06 0.41 7.83 -51.93 -0.41 0.00 16 35 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 36 H 0.09 0.62 7.86 -51.93 -0.41 0.22 16 37 H 0.38 5.19 8.34 45.56 0.38 5.57 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.35 6.23 8.43 -39.29 -0.33 5.90 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -36.98 386.82 -5.75 -42.73 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -5.49 Total: 16.41 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 0.07 Total: 14.83 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.61 Total: -62.08 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.53 Total: -34.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.98 -5.75 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486272701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.361 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds