Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29936 * 125.37729 * 2 1 4 4 C 1.36072 * 108.47909 * 179.97438 * 3 2 1 5 5 C 1.47415 * 126.44870 * 179.97438 * 4 3 2 6 6 O 1.21610 * 120.00159 * 186.14420 * 5 4 3 7 7 N 1.34779 * 120.00327 * 6.14291 * 5 4 3 8 8 C 1.46498 * 119.99597 * 356.20992 * 7 5 4 9 9 C 1.46499 * 120.00419 * 176.20255 * 7 5 4 10 10 C 1.53006 * 109.47032 * 90.00000 * 9 7 5 11 11 H 1.09003 * 109.46550 * 60.00302 * 10 9 7 12 12 O 1.42896 * 109.46918 * 300.00280 * 10 9 7 13 13 C 1.52999 * 109.47091 * 180.02562 * 10 9 7 14 14 N 1.46900 * 109.46829 * 185.00198 * 13 10 9 15 15 C 1.46903 * 110.99611 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.46632 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00281 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99445 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99559 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00404 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99930 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99933 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47406 * 89.99428 * 23 21 19 25 25 H 1.48493 * 109.47140 * 209.99969 * 23 21 19 26 26 H 1.48503 * 109.46886 * 329.99856 * 23 21 19 27 27 C 1.36088 * 107.10046 * 0.23312 * 4 3 2 28 28 O 1.34056 * 125.38442 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47254 * 89.99889 * 1 2 3 30 30 H 1.09000 * 109.47026 * 209.99723 * 1 2 3 31 31 H 1.09000 * 109.47477 * 329.99638 * 1 2 3 32 32 H 1.09001 * 109.46825 * 275.65908 * 8 7 5 33 33 H 1.08997 * 109.47638 * 35.65589 * 8 7 5 34 34 H 1.09003 * 109.47102 * 155.66209 * 8 7 5 35 35 H 1.09004 * 109.46685 * 330.00705 * 9 7 5 36 36 H 1.08992 * 109.47349 * 210.00759 * 9 7 5 37 37 H 0.96697 * 114.00353 * 299.99456 * 12 10 9 38 38 H 1.08997 * 109.47157 * 64.99941 * 13 10 9 39 39 H 1.09002 * 109.46741 * 305.00357 * 13 10 9 40 40 H 1.00895 * 110.99953 * 56.05197 * 14 13 10 41 41 H 1.09001 * 109.46808 * 299.99680 * 15 14 13 42 42 H 1.08993 * 109.46956 * 59.99946 * 15 14 13 43 43 H 0.96999 * 120.00101 * 0.02562 * 18 16 15 44 44 H 0.96999 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.07997 * 126.52831 * 179.77151 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7438 1.5439 0.0003 6 8 5.8568 1.0668 -0.1119 7 7 4.5917 2.8774 0.1242 8 6 3.2484 3.4596 0.1757 9 6 5.7696 3.7445 0.2076 10 6 6.1828 4.1802 -1.1997 11 1 5.3625 4.7254 -1.6667 12 8 6.4949 3.0266 -1.9831 13 6 7.4133 5.0852 -1.1127 14 7 7.7382 5.5997 -2.4498 15 6 8.9177 6.4743 -2.4050 16 6 9.2192 6.9822 -3.7914 17 8 8.5207 6.6482 -4.7250 18 7 10.2653 7.8077 -3.9938 19 6 10.5400 8.2694 -5.2552 20 1 9.9180 7.9719 -6.0865 21 6 11.6187 9.1200 -5.4640 22 7 12.3758 9.4816 -4.4526 23 14 11.9926 9.7496 -7.1825 24 1 11.2630 11.0224 -7.4131 25 1 13.4527 9.9846 -7.3168 26 1 11.5592 8.7423 -8.1839 27 6 3.5660 -0.6969 -0.0044 28 8 2.2832 -1.0929 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.8770 3.6064 -0.8385 33 1 2.5808 2.7863 0.7132 34 1 3.2880 4.4196 0.6906 35 1 6.5898 3.1991 0.6745 36 1 5.5315 4.6243 0.8052 37 1 7.2177 2.4925 -1.6261 38 1 8.2581 4.5139 -0.7281 39 1 7.2040 5.9195 -0.4432 40 1 6.9478 6.0786 -2.8548 41 1 8.7192 7.3183 -1.7444 42 1 9.7727 5.9122 -2.0295 43 1 10.8241 8.0746 -3.2473 44 1 13.1286 10.0757 -4.5984 45 1 4.4361 -1.3367 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486272701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -112.536900 kcal Electronic energy + Delta-G solvation = -28673.038352 eV Core-core repulsion = 24305.822690 eV Total energy + Delta-G solvation = -4367.215663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.46779 -40.94669 -40.17086 -38.67347 -36.63654 -36.24074 -35.76637 -35.52189 -33.28294 -33.15812 -31.54216 -29.06870 -28.75139 -27.58423 -26.80788 -25.33754 -23.90244 -22.78449 -22.42489 -21.10021 -20.70388 -19.92377 -18.73163 -18.23798 -18.00265 -17.66224 -17.46828 -17.07082 -16.91986 -16.57144 -16.17987 -16.03045 -15.83003 -15.30191 -15.14788 -15.03279 -14.81623 -14.55783 -14.29760 -14.03518 -13.92171 -13.80645 -13.54402 -13.44025 -13.24997 -13.20742 -13.00130 -12.80686 -12.59321 -12.43243 -12.31444 -12.13103 -12.05603 -11.58982 -11.52177 -11.22064 -11.06442 -10.36394 -10.07967 -10.02769 -9.55764 -9.27526 -8.47795 -5.96710 0.06442 0.95633 1.37219 1.40903 1.54016 1.59370 1.89469 2.03915 2.20268 2.28790 2.84043 2.91808 3.19197 3.42575 3.55522 3.68460 3.80046 3.84089 4.10683 4.14210 4.28515 4.38998 4.42879 4.43594 4.48420 4.52475 4.55182 4.63173 4.66073 4.69467 4.70326 4.76886 4.83960 5.07708 5.11164 5.29894 5.39677 5.52692 5.87399 6.09649 6.20251 6.36335 6.47504 6.59295 6.87841 7.03375 7.11517 7.54749 8.10838 8.69563 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001615 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.137748 B =17333.714028 C =17483.060048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.479 5.479 4 C -0.097 4.097 5 C 0.597 3.403 6 O -0.561 6.561 7 N -0.594 5.594 8 C 0.074 3.926 9 C 0.089 3.911 10 C 0.100 3.900 11 H 0.088 0.912 12 O -0.564 6.564 13 C 0.035 3.965 14 N -0.681 5.681 15 C 0.067 3.933 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.275 1.275 27 C 0.019 3.981 28 O -0.199 6.199 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.378 0.622 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.342 0.658 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.425 -16.979 19.166 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.210 5.210 4 C -0.216 4.216 5 C 0.385 3.615 6 O -0.441 6.441 7 N -0.324 5.324 8 C -0.068 4.068 9 C -0.034 4.034 10 C 0.039 3.961 11 H 0.106 0.894 12 O -0.370 6.370 13 C -0.095 4.095 14 N -0.313 5.313 15 C -0.065 4.065 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.055 4.055 28 O -0.085 6.085 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.226 0.774 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.160 0.840 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -23.511 -17.010 17.973 34.134 hybrid contribution 1.232 0.558 0.016 1.352 sum -22.279 -16.452 17.989 33.025 Atomic orbital electron populations 1.20624 0.77690 1.06954 1.06327 1.27480 0.98239 0.77796 0.97597 1.70916 1.00457 1.29922 1.19718 1.21749 0.92303 0.93692 1.13853 1.17014 0.86292 0.82201 0.76010 1.90750 1.25789 1.75665 1.51875 1.47548 1.08745 1.05249 1.70877 1.22313 0.81783 1.00316 1.02383 1.22316 0.88595 0.95610 0.96921 1.22299 0.95975 0.86292 0.91541 0.89403 1.86568 1.57887 1.38948 1.53642 1.22674 0.98631 0.98878 0.89280 1.59921 1.07394 1.41465 1.22555 1.21538 0.95977 0.96483 0.92547 1.20948 0.82642 0.82138 0.91988 1.90500 1.52416 1.62297 1.45991 1.41919 1.26827 1.42374 1.09826 1.19674 1.12814 1.27137 0.87033 0.90521 1.26042 0.95162 0.96676 1.03284 1.69670 1.18322 1.35545 1.32438 0.84918 0.77815 0.78443 0.77080 1.19450 1.19375 1.20036 1.25654 0.85542 0.95341 0.98960 1.84425 1.16603 1.38256 1.69209 0.87319 0.87082 0.86672 0.93706 0.87890 0.89291 0.89507 0.86136 0.77408 0.89810 0.91804 0.83967 0.91125 0.87924 0.76891 0.91239 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 71.23 0.75 0.59 16 2 C 0.20 2.57 8.30 88.39 0.73 3.30 16 3 N -0.48 -8.62 7.84 -293.04 -2.30 -10.91 16 4 C -0.10 -2.05 6.67 40.40 0.27 -1.78 16 5 C 0.60 14.65 7.23 86.66 0.63 15.28 16 6 O -0.56 -16.20 15.05 8.11 0.12 -16.08 16 7 N -0.59 -12.06 2.83 -850.67 -2.41 -14.47 16 8 C 0.07 1.17 9.68 127.77 1.24 2.41 16 9 C 0.09 1.55 5.18 86.38 0.45 2.00 16 10 C 0.10 2.29 3.42 30.60 0.10 2.40 16 11 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 12 O -0.56 -17.35 12.01 -136.81 -1.64 -18.99 16 13 C 0.03 0.80 5.32 86.30 0.46 1.26 16 14 N -0.68 -22.76 6.07 -517.93 -3.15 -25.90 16 15 C 0.07 2.36 6.17 85.56 0.53 2.89 16 16 C 0.44 21.59 7.82 87.66 0.69 22.27 16 17 O -0.63 -36.55 15.78 -3.06 -0.05 -36.60 16 18 N -0.57 -30.22 5.29 -306.97 -1.62 -31.84 16 19 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -50.19 13.05 21.67 0.28 -49.91 16 23 Si 0.99 43.81 29.55 68.60 2.03 45.83 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.02 0.31 11.95 67.32 0.80 1.12 16 28 O -0.20 -2.89 10.73 0.36 0.00 -2.89 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.66 5.25 -2.39 -0.01 1.64 16 34 H 0.09 0.93 7.83 -2.39 -0.02 0.91 16 35 H 0.09 1.60 7.48 -2.38 -0.02 1.58 16 36 H 0.12 1.31 7.86 -2.39 -0.02 1.29 16 37 H 0.38 10.73 8.34 -74.06 -0.62 10.12 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.34 12.14 8.43 -89.70 -0.76 11.39 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 44 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.25 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -82.03 386.82 -1.84 -83.87 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -1.04 Total: 45.23 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 7.93 Total: 32.65 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -9.19 Total: -133.02 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -1.57 Total: -74.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -82.03 -1.84 -83.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486272701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.666 kcal (2) G-P(sol) polarization free energy of solvation -82.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds