Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46982 * 2 1 4 4 N 1.34234 * 126.27853 * 264.97249 * 3 2 1 5 5 H 0.96993 * 125.74329 * 0.06252 * 4 3 2 6 6 N 1.39930 * 108.51823 * 179.77488 * 4 3 2 7 7 C 1.30532 * 108.90034 * 0.42800 * 6 4 3 8 8 Cl 1.73599 * 126.01149 * 179.85008 * 7 6 4 9 9 C 1.38068 * 126.27925 * 85.00256 * 3 2 1 10 10 C 1.47384 * 126.42521 * 359.94161 * 9 3 2 11 11 O 1.21609 * 120.00000 * 270.01950 * 10 9 3 12 12 N 1.34776 * 119.99789 * 90.01614 * 10 9 3 13 13 C 1.47485 * 127.03638 * 0.03013 * 12 10 9 14 14 C 1.54001 * 107.08243 * 154.51419 * 13 12 10 15 15 C 1.54616 * 105.04790 * 1.30688 * 14 13 12 16 16 C 1.53002 * 110.73653 * 263.50980 * 15 14 13 17 17 C 1.52995 * 110.74151 * 140.18854 * 15 14 13 18 18 N 1.46498 * 109.47186 * 179.97438 * 17 15 14 19 19 C 1.36942 * 120.00114 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99969 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47358 * 90.00330 * 23 21 19 25 25 H 1.48505 * 109.46877 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.47111 * 329.99735 * 23 21 19 27 27 C 1.48127 * 127.03120 * 179.70665 * 12 10 9 28 28 H 1.08998 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46982 * 299.99537 * 1 2 3 30 30 H 1.08997 * 109.46836 * 59.99817 * 1 2 3 31 31 H 1.09001 * 109.46982 * 240.00463 * 2 1 3 32 32 H 1.09004 * 109.47363 * 119.99782 * 2 1 3 33 33 H 1.09000 * 109.90996 * 273.87056 * 13 12 10 34 34 H 1.08991 * 109.91430 * 34.95748 * 13 12 10 35 35 H 1.09006 * 110.32521 * 120.19517 * 14 13 12 36 36 H 1.08999 * 110.32301 * 242.30552 * 14 13 12 37 37 H 1.09004 * 109.47041 * 60.00212 * 16 15 14 38 38 H 1.09003 * 109.46989 * 179.97438 * 16 15 14 39 39 H 1.09001 * 109.47665 * 300.00251 * 16 15 14 40 40 H 1.08997 * 109.47334 * 299.99704 * 17 15 14 41 41 H 1.08999 * 109.47490 * 59.99988 * 17 15 14 42 42 H 0.97001 * 119.99965 * 0.02562 * 18 17 15 43 43 H 0.96997 * 120.00223 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.66013 * 337.77736 * 27 12 10 45 45 H 1.09001 * 110.65750 * 100.88588 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3865 2.1381 -1.0780 5 1 2.3621 1.8292 -1.9971 6 7 2.7905 3.4087 -0.6532 7 6 2.6971 3.4694 0.6473 8 17 3.0904 4.8410 1.6361 9 6 2.2132 2.2235 1.1088 10 6 1.9505 1.8516 2.5105 11 8 0.8531 2.0484 2.9964 12 7 2.9263 1.2934 3.2539 13 6 4.3042 0.9876 2.8260 14 6 5.1816 0.9879 4.0917 15 6 4.2065 1.2786 5.2559 16 6 4.2151 2.7669 5.6108 17 6 4.5531 0.4266 6.4785 18 7 3.6142 0.7241 7.5630 19 6 3.7287 0.0771 8.7645 20 1 4.5114 -0.6522 8.9127 21 6 2.8388 0.3586 9.7920 22 7 1.8846 1.2470 9.6112 23 14 2.9954 -0.5234 11.4311 24 1 3.8895 0.2526 12.3274 25 1 1.6542 -0.6476 12.0565 26 1 3.5668 -1.8766 11.2125 27 6 2.8364 0.8677 4.6698 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.3366 0.0066 2.3521 34 1 4.6538 1.7485 2.1283 35 1 5.6523 0.0140 4.2263 36 1 5.9397 1.7684 4.0266 37 1 3.9091 3.3494 4.7418 38 1 3.5216 2.9485 6.4320 39 1 5.2201 3.0631 5.9113 40 1 4.4838 -0.6293 6.2170 41 1 5.5680 0.6544 6.8043 42 1 2.9110 1.3788 7.4298 43 1 1.2625 1.4435 10.3290 44 1 2.0281 1.3929 5.1786 45 1 2.6987 -0.2114 4.7389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500353648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 40.882976 kcal Electronic energy + Delta-G solvation = -28074.956080 eV Core-core repulsion = 24155.102367 eV Total energy + Delta-G solvation = -3919.853713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89410 -39.82019 -37.74823 -37.05391 -34.74752 -34.53462 -32.68210 -31.67191 -30.43990 -29.78158 -29.14913 -26.58756 -25.60253 -24.43060 -23.58109 -22.22527 -22.04876 -21.69543 -19.11572 -18.75462 -17.98915 -17.10460 -16.53265 -15.82229 -15.68911 -15.53416 -15.31556 -14.77398 -14.47678 -14.26080 -13.95281 -13.76081 -13.41512 -13.34412 -13.07407 -12.77740 -12.50627 -12.32192 -12.21840 -12.16200 -12.01342 -11.72117 -11.59561 -11.48461 -11.47601 -11.00772 -10.94044 -10.79791 -10.47589 -10.42025 -10.26652 -9.97992 -9.84107 -9.77873 -9.58747 -9.05601 -8.83984 -8.51607 -6.87436 -5.71568 -3.00429 1.17761 1.19820 1.88205 2.50743 2.61209 3.18336 3.46673 3.51532 3.53601 4.03874 4.35042 4.45062 4.62528 4.73504 4.77046 4.78580 4.96502 4.99950 5.07117 5.18256 5.36486 5.43171 5.46709 5.53354 5.58258 5.62647 5.65456 5.81152 5.89541 5.92410 6.07403 6.12607 6.15314 6.21106 6.36086 6.44978 6.58594 6.59691 6.71177 6.81193 6.90993 6.92543 7.65825 7.73881 8.25858 8.46916 9.58193 10.16004 10.50369 11.51038 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002919 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.553771 B = 9591.579023 C =10100.166647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C 0.144 3.856 4 N -0.447 5.447 5 H 0.447 0.553 6 N -0.277 5.277 7 C 0.159 3.841 8 Cl 0.025 6.975 9 C -0.256 4.256 10 C 0.612 3.388 11 O -0.524 6.524 12 N -0.608 5.608 13 C 0.106 3.894 14 C -0.123 4.123 15 C -0.078 4.078 16 C -0.130 4.130 17 C 0.170 3.830 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.120 3.880 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.090 0.910 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -0.759 -25.660 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C 0.012 3.988 4 N -0.156 5.156 5 H 0.293 0.707 6 N -0.102 5.102 7 C -0.034 4.034 8 Cl 0.052 6.948 9 C -0.272 4.272 10 C 0.398 3.602 11 O -0.399 6.399 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.162 4.162 15 C -0.079 4.079 16 C -0.187 4.187 17 C 0.042 3.958 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.001 4.001 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.670 0.064 -26.261 26.516 hybrid contribution -0.197 -0.575 1.108 1.264 sum 3.472 -0.511 -25.153 25.397 Atomic orbital electron populations 1.21784 0.92760 1.03015 1.03363 1.20402 0.97629 0.87817 1.04746 1.21435 0.96114 0.95227 0.86051 1.45814 1.51730 1.09129 1.08961 0.70663 1.77155 1.23616 0.98686 1.10785 1.22588 0.99917 0.90304 0.90547 1.98441 1.92086 1.39378 1.64854 1.19767 1.18284 0.94453 0.94666 1.16635 0.83295 0.76901 0.83403 1.90836 1.22944 1.53698 1.72458 1.48753 1.11533 1.60257 1.13622 1.22028 0.81822 1.00265 0.97587 1.22574 0.97575 1.02856 0.93201 1.21788 0.93837 0.97301 0.94990 1.21711 1.02219 0.93525 1.01288 1.20617 0.93731 0.94956 0.86536 1.42414 1.35124 1.49733 1.10297 1.19200 1.11190 1.16987 0.89767 0.91258 1.24732 0.98139 0.99653 0.98359 1.69658 1.19283 1.36240 1.32744 0.86214 0.76730 0.79052 0.84310 1.21821 1.21834 1.20832 1.22546 0.98646 0.99991 0.78940 0.91097 0.90905 0.92507 0.89659 0.88436 0.91837 0.91444 0.90254 0.90559 0.93555 0.91127 0.92768 0.96142 0.95935 0.77985 0.93498 0.89120 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.07 -0.45 6.27 -27.88 -0.17 -0.62 16 3 C 0.14 1.34 6.55 -81.60 -0.53 0.80 16 4 N -0.45 -3.61 7.28 33.86 0.25 -3.36 16 5 H 0.45 1.83 8.96 -182.73 -1.64 0.19 16 6 N -0.28 -3.18 12.64 33.18 0.42 -2.77 16 7 C 0.16 2.04 7.89 -16.90 -0.13 1.91 16 8 Cl 0.02 0.32 29.19 -51.86 -1.51 -1.20 16 9 C -0.26 -3.27 4.88 -105.04 -0.51 -3.78 16 10 C 0.61 9.45 7.33 -12.54 -0.09 9.36 16 11 O -0.52 -10.21 17.32 5.27 0.09 -10.12 16 12 N -0.61 -8.59 3.19 -171.26 -0.55 -9.14 16 13 C 0.11 1.17 6.75 -2.98 -0.02 1.15 16 14 C -0.12 -1.44 6.09 -25.36 -0.15 -1.59 16 15 C -0.08 -1.21 0.65 -152.83 -0.10 -1.31 16 16 C -0.13 -2.14 8.31 37.16 0.31 -1.83 16 17 C 0.17 3.24 5.11 -4.04 -0.02 3.22 16 18 N -0.73 -18.00 5.16 -59.91 -0.31 -18.31 16 19 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 23 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.12 1.97 5.66 -2.31 -0.01 1.95 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 35 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 36 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.39 10.10 6.21 -40.82 -0.25 9.84 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 45 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -34.21 387.97 -9.43 -43.64 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.04 Total: 4.26 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.28 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.53 Total: -61.11 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.21 -9.43 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500353648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.519 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds