Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 N 1.46498 * 109.47513 * 240.00282 * 2 1 3 5 5 N 1.39928 * 125.75304 * 60.01929 * 4 2 1 6 6 C 1.30407 * 108.96061 * 179.97438 * 5 4 2 7 7 C 1.41335 * 108.05008 * 359.97438 * 6 5 4 8 8 C 1.47303 * 126.43529 * 180.02562 * 7 6 5 9 9 O 1.21619 * 119.99897 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00052 * 359.97438 * 8 7 6 11 11 C 1.46497 * 120.00152 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47136 * 176.08898 * 11 10 8 13 13 N 1.46500 * 112.84867 * 294.03576 * 12 11 10 14 14 C 1.36936 * 120.00189 * 294.81532 * 13 12 11 15 15 H 1.08006 * 119.99828 * 353.94255 * 14 13 12 16 16 C 1.38810 * 120.00289 * 173.93490 * 14 13 12 17 17 N 1.31613 * 119.99936 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46920 * 60.00770 * 18 16 14 20 20 H 1.48499 * 109.46946 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47377 * 300.00547 * 18 16 14 22 22 C 1.53781 * 113.61302 * 162.84148 * 12 11 10 23 23 C 1.53959 * 87.01616 * 220.04740 * 22 12 11 24 24 C 1.53774 * 87.11176 * 25.36181 * 23 22 12 25 25 C 1.34349 * 125.74836 * 239.71946 * 4 2 1 26 26 Cl 1.73597 * 126.32145 * 0.02562 * 25 4 2 27 27 H 1.09000 * 109.47419 * 300.00086 * 1 2 3 28 28 H 1.09007 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47343 * 60.00196 * 1 2 3 30 30 H 1.09004 * 109.47343 * 119.99804 * 2 1 3 31 31 H 1.09000 * 109.47046 * 59.99686 * 3 2 1 32 32 H 1.09000 * 109.47724 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.47322 * 300.00052 * 3 2 1 34 34 H 1.08003 * 125.97381 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99856 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.47671 * 296.08843 * 11 10 8 37 37 H 1.08998 * 109.47238 * 56.09367 * 11 10 8 38 38 H 0.97000 * 120.00341 * 114.82389 * 13 12 11 39 39 H 0.97002 * 120.00129 * 179.97438 * 17 16 14 40 40 H 1.08996 * 113.61275 * 334.56608 * 22 12 11 41 41 H 1.08997 * 113.61648 * 105.47380 * 22 12 11 42 42 H 1.08999 * 113.53502 * 270.80675 * 23 22 12 43 43 H 1.09005 * 113.66298 * 139.93536 * 23 22 12 44 44 H 1.09005 * 113.61689 * 220.09040 * 24 23 22 45 45 H 1.09001 * 113.61900 * 89.19047 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 -1.1962 5 7 1.7560 -0.3186 -2.5193 6 6 2.3501 -1.1580 -3.3212 7 6 3.0270 -2.1144 -2.5307 8 6 3.8293 -3.2470 -3.0239 9 8 4.3644 -4.0023 -2.2349 10 7 3.9706 -3.4463 -4.3493 11 6 4.7690 -4.5724 -4.8397 12 6 4.6879 -4.6284 -6.3666 13 7 3.3424 -4.9424 -6.8537 14 6 2.7853 -6.1644 -6.5861 15 1 3.3721 -6.9311 -6.1020 16 6 1.4663 -6.4176 -6.9369 17 7 0.7514 -5.4834 -7.5271 18 14 0.7061 -8.0843 -6.5712 19 1 0.7424 -8.3346 -5.1079 20 1 -0.7024 -8.0999 -7.0417 21 1 1.4739 -9.1436 -7.2738 22 6 5.7916 -5.4836 -7.0111 23 6 5.8794 -4.4026 -8.1039 24 6 5.3273 -3.4152 -7.0623 25 6 2.7984 -1.7843 -1.2075 26 17 3.4049 -2.6292 0.1824 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 2.3294 -1.1272 -4.4006 35 1 3.5435 -2.8441 -4.9785 36 1 5.8074 -4.4414 -4.5356 37 1 4.3823 -5.5016 -4.4211 38 1 2.8462 -4.2849 -7.3658 39 1 -0.1702 -5.6605 -7.7726 40 1 6.6927 -5.5640 -6.4031 41 1 5.4392 -6.4479 -7.3769 42 1 5.2047 -4.5755 -8.9423 43 1 6.8991 -4.1806 -8.4187 44 1 4.6005 -2.7121 -7.4693 45 1 6.1012 -2.9290 -6.4683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501986056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = 64.293116 kcal Electronic energy + Delta-G solvation = -27626.882224 eV Core-core repulsion = 23708.043651 eV Total energy + Delta-G solvation = -3918.838573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.52719 -39.26086 -38.13301 -36.95390 -35.92904 -33.76626 -33.21303 -30.87241 -30.28995 -29.81538 -27.68502 -27.08347 -25.25612 -23.96003 -23.29636 -22.76484 -21.41305 -20.48120 -19.61526 -18.29394 -17.83719 -17.08163 -16.47111 -15.76983 -15.51822 -15.10327 -14.93978 -14.60800 -14.34936 -14.28969 -13.90868 -13.54557 -13.37652 -13.24409 -13.14646 -12.68174 -12.64439 -12.52791 -12.11179 -12.07166 -12.00038 -11.76250 -11.68728 -11.33816 -11.18556 -10.97840 -10.82521 -10.79222 -10.34340 -10.21465 -10.05792 -9.69190 -9.56778 -9.48442 -9.38583 -8.84282 -8.77621 -8.31071 -7.00165 -5.78954 -3.08152 1.25509 1.29047 2.15796 2.34136 3.45334 3.49798 3.51513 3.68069 3.81376 4.09122 4.47064 4.54332 4.57693 4.67811 4.99052 5.07092 5.14766 5.21931 5.22547 5.29185 5.32061 5.34009 5.38912 5.46427 5.58381 5.64596 5.73808 5.78492 5.83476 6.10956 6.16842 6.22490 6.26549 6.35668 6.43837 6.43930 6.60969 6.76329 6.96065 7.03042 7.14252 7.31973 7.73496 8.11341 8.39967 8.78119 9.51397 10.04960 10.40186 11.43073 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.003307 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.282226 B = 8466.108364 C = 9278.067574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.350 5.350 5 N -0.272 5.272 6 C 0.092 3.908 7 C -0.259 4.259 8 C 0.586 3.414 9 O -0.547 6.547 10 N -0.698 5.698 11 C 0.124 3.876 12 C 0.174 3.826 13 N -0.699 5.699 14 C -0.234 4.234 15 H 0.070 0.930 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.145 4.145 25 C 0.177 3.823 26 Cl 0.022 6.978 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.199 0.801 35 H 0.398 0.602 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 14.310 12.693 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.218 4.218 4 N -0.133 5.133 5 N -0.093 5.093 6 C -0.095 4.095 7 C -0.275 4.275 8 C 0.372 3.628 9 O -0.426 6.426 10 N -0.347 5.347 11 C -0.002 4.002 12 C 0.081 3.919 13 N -0.339 5.339 14 C -0.365 4.365 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.579 5.579 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.191 4.191 23 C -0.166 4.166 24 C -0.183 4.183 25 C 0.019 3.981 26 Cl 0.050 6.950 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.216 0.784 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.382 14.626 13.619 20.460 hybrid contribution -0.453 -1.321 -0.173 1.407 sum 3.929 13.306 13.446 19.320 Atomic orbital electron populations 1.22139 0.92468 1.03499 1.03800 1.21531 0.96306 0.94275 0.83297 1.22132 1.01946 0.93880 1.03814 1.48876 1.37478 1.20214 1.06767 1.77241 1.23654 1.23190 0.85192 1.24084 0.93785 0.91201 1.00449 1.20050 1.12982 1.04208 0.90295 1.17009 0.79923 0.83135 0.82760 1.90770 1.49281 1.47006 1.55517 1.45459 1.52542 1.30996 1.05686 1.21832 0.93127 0.89202 0.96083 1.20818 0.87463 0.94020 0.89611 1.42040 1.11747 1.16524 1.63627 1.19049 0.94042 0.90411 1.33007 0.91214 1.24690 0.96470 0.97740 1.01447 1.69633 1.09108 1.32778 1.46386 0.86333 0.78288 0.83933 0.78049 1.21222 1.21788 1.21268 1.23340 0.98543 0.99252 0.97987 1.22660 0.99721 0.97011 0.97206 1.23150 0.99959 0.96684 0.98489 1.22031 0.95483 0.89709 0.90883 1.98435 1.84746 1.73952 1.37822 0.90312 0.91723 0.90641 0.87824 0.90324 0.91877 0.90673 0.78432 0.76820 0.92884 0.91175 0.77939 0.93517 0.91324 0.90745 0.90086 0.92793 0.91659 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.45 37.16 0.35 -0.92 16 2 C 0.15 1.29 3.66 -67.93 -0.25 1.05 16 3 C -0.16 -1.14 9.44 37.16 0.35 -0.79 16 4 N -0.35 -4.37 3.25 -51.12 -0.17 -4.53 16 5 N -0.27 -3.68 12.33 30.86 0.38 -3.30 16 6 C 0.09 1.26 11.50 -16.98 -0.20 1.06 16 7 C -0.26 -4.10 6.13 -105.02 -0.64 -4.74 16 8 C 0.59 10.67 7.81 -12.58 -0.10 10.57 16 9 O -0.55 -11.41 15.64 5.26 0.08 -11.32 16 10 N -0.70 -12.06 5.44 -61.43 -0.33 -12.39 16 11 C 0.12 2.27 5.03 -4.04 -0.02 2.25 16 12 C 0.17 3.16 0.80 -131.01 -0.10 3.06 16 13 N -0.70 -15.89 5.18 -46.48 -0.24 -16.13 16 14 C -0.23 -6.15 9.06 -15.06 -0.14 -6.28 16 15 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.92 13.07 55.49 0.73 -26.20 16 18 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.15 -2.56 7.29 -25.82 -0.19 -2.74 16 23 C -0.13 -1.97 8.00 -25.83 -0.21 -2.17 16 24 C -0.14 -2.17 7.08 -25.93 -0.18 -2.35 16 25 C 0.18 2.56 7.53 -16.44 -0.12 2.43 16 26 Cl 0.02 0.30 27.00 -51.86 -1.40 -1.10 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.79 7.23 -51.93 -0.38 0.42 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.20 2.21 7.50 -52.48 -0.39 1.82 16 35 H 0.40 6.27 7.26 -40.82 -0.30 5.97 16 36 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.07 1.52 7.85 -51.93 -0.41 1.11 16 38 H 0.39 9.33 7.87 -40.82 -0.32 9.01 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 41 H 0.07 1.42 7.86 -51.93 -0.41 1.01 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -31.64 390.20 -8.45 -40.09 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.81 Total: 11.59 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.54 Total: 0.13 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.36 Total: -62.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.40 Total: -1.10 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.64 -8.45 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501986056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.379 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds