Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 N 1.30412 * 125.97438 * 270.00614 * 3 2 1 5 5 N 1.39931 * 108.95501 * 179.97438 * 4 3 2 6 6 C 1.46503 * 125.74733 * 179.97438 * 5 4 3 7 7 C 1.34351 * 108.50198 * 359.76288 * 5 4 3 8 8 Cl 1.73597 * 126.31874 * 180.23239 * 7 5 4 9 9 C 1.38278 * 107.36006 * 0.36674 * 7 5 4 10 10 C 1.47301 * 126.43429 * 179.89133 * 9 7 5 11 11 O 1.21619 * 120.00499 * 269.69711 * 10 9 7 12 12 N 1.34778 * 119.99784 * 89.69387 * 10 9 7 13 13 C 1.46499 * 119.99940 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.91032 * 23.75105 * 13 12 10 15 15 C 1.53784 * 113.61434 * 155.00095 * 13 12 10 16 16 C 1.53787 * 87.07923 * 89.11404 * 15 13 12 17 17 H 1.09000 * 113.61529 * 270.88430 * 16 15 13 18 18 C 1.53005 * 113.61178 * 140.06478 * 16 15 13 19 19 N 1.46499 * 109.46872 * 174.99760 * 18 16 15 20 20 C 1.36937 * 119.99436 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00642 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99635 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99880 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00020 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47628 * 89.99554 * 24 22 20 26 26 H 1.48501 * 109.47029 * 209.99883 * 24 22 20 27 27 H 1.48510 * 109.46907 * 329.99409 * 24 22 20 28 28 C 1.53779 * 113.61357 * 252.49697 * 13 12 10 29 29 H 1.09001 * 109.47773 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47363 * 299.99909 * 1 2 3 31 31 H 1.09007 * 109.47358 * 59.99591 * 1 2 3 32 32 H 1.08999 * 109.46685 * 239.99947 * 2 1 3 33 33 H 1.08996 * 109.47097 * 120.00795 * 2 1 3 34 34 H 1.09001 * 109.46757 * 90.02461 * 6 5 4 35 35 H 1.09003 * 109.46806 * 210.02138 * 6 5 4 36 36 H 1.08992 * 109.47059 * 330.02454 * 6 5 4 37 37 H 0.97000 * 119.99785 * 0.02562 * 12 10 9 38 38 H 1.09004 * 113.61451 * 334.56890 * 15 13 12 39 39 H 1.08994 * 113.61477 * 203.66192 * 15 13 12 40 40 H 1.08995 * 109.46809 * 295.00307 * 18 16 15 41 41 H 1.09006 * 109.46737 * 54.99803 * 18 16 15 42 42 H 0.96993 * 120.00253 * 0.02562 * 19 18 16 43 43 H 0.97001 * 119.99866 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.61307 * 156.33848 * 28 13 12 45 45 H 1.09007 * 113.61642 * 25.43606 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2877 2.1431 -1.0554 5 7 2.7333 3.4047 -0.6458 6 6 3.1224 4.5043 -1.5323 7 6 2.7397 3.4393 0.6972 8 17 3.2067 4.7855 1.6888 9 6 2.3086 2.2037 1.1438 10 6 2.1594 1.7843 2.5480 11 8 3.0907 1.2599 3.1283 12 7 0.9908 1.9817 3.1897 13 6 0.8425 1.5651 4.5863 14 1 1.7945 1.5016 5.1135 15 6 -0.2347 2.3509 5.3526 16 6 -1.2384 1.2888 4.8735 17 1 -1.6970 1.5233 3.9128 18 6 -2.2615 0.8880 5.9382 19 7 -3.2398 -0.0324 5.3534 20 6 -4.2578 -0.5290 6.1229 21 1 -4.3397 -0.2419 7.1608 22 6 -5.1845 -1.4015 5.5689 23 7 -6.1626 -1.8793 6.3087 24 14 -5.0424 -1.8987 3.7740 25 1 -4.1999 -3.1166 3.6627 26 1 -6.3950 -2.1811 3.2300 27 1 -4.4193 -0.7936 3.0021 28 6 -0.0462 0.3233 4.7677 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2500 5.1196 -1.7523 35 1 3.8827 5.1135 -1.0433 36 1 3.5239 4.0980 -2.4605 37 1 0.2479 2.3997 2.7267 38 1 -0.4228 3.3445 4.9456 39 1 -0.0864 2.3558 6.4324 40 1 -1.7505 0.3971 6.7664 41 1 -2.7734 1.7784 6.3036 42 1 -3.1660 -0.2905 4.4213 43 1 -6.8100 -2.4893 5.9217 44 1 0.1537 -0.2261 5.6877 45 1 -0.0821 -0.3202 3.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506902213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 64.413928 kcal Electronic energy + Delta-G solvation = -27276.983297 eV Core-core repulsion = 23358.149963 eV Total energy + Delta-G solvation = -3918.833334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92852 -40.04963 -38.21359 -37.50086 -35.18804 -34.67645 -33.15674 -32.25046 -31.20155 -30.49372 -27.67380 -27.00048 -25.57645 -24.37672 -23.39412 -22.56811 -21.33565 -21.02194 -20.11889 -19.21409 -18.15641 -17.51674 -16.81529 -16.32597 -15.97535 -15.67069 -14.96692 -14.79148 -14.49150 -14.39615 -14.18991 -13.90816 -13.80668 -13.58199 -13.30012 -13.29127 -12.93978 -12.62302 -12.47049 -12.30539 -12.21462 -12.14881 -11.83407 -11.77410 -11.50419 -11.39392 -11.04273 -10.88178 -10.63161 -10.24598 -10.16682 -10.12691 -9.86156 -9.73552 -9.55962 -9.09033 -9.05867 -8.85113 -7.19099 -5.74510 -3.09237 0.81863 0.98029 1.91186 2.00307 2.36576 3.08969 3.38290 3.41158 3.46412 3.85066 4.28180 4.55870 4.58308 4.61048 4.62189 4.67884 4.76490 4.83950 4.88458 5.03567 5.03861 5.04904 5.12460 5.25973 5.55569 5.66611 5.70437 5.71617 5.75458 5.83706 5.86364 5.88017 5.98344 6.00895 6.09480 6.14233 6.15727 6.28579 6.57127 6.71444 6.85118 7.00780 7.37973 8.02683 8.08024 8.44966 9.24729 9.97230 10.17553 11.44170 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.002828 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.275110 B = 9899.130008 C =10991.805748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.128 3.872 4 N -0.270 5.270 5 N -0.354 5.354 6 C 0.092 3.908 7 C 0.157 3.843 8 Cl 0.013 6.987 9 C -0.256 4.256 10 C 0.601 3.399 11 O -0.527 6.527 12 N -0.698 5.698 13 C 0.115 3.885 14 H 0.102 0.898 15 C -0.136 4.136 16 C -0.119 4.119 17 H 0.086 0.914 18 C 0.167 3.833 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.094 0.906 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.512 15.025 -16.045 30.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.039 4.039 4 N -0.092 5.092 5 N -0.135 5.135 6 C -0.049 4.049 7 C 0.000 4.000 8 Cl 0.041 6.959 9 C -0.272 4.272 10 C 0.385 3.615 11 O -0.402 6.402 12 N -0.348 5.348 13 C 0.010 3.990 14 H 0.120 0.880 15 C -0.175 4.175 16 C -0.138 4.138 17 H 0.104 0.896 18 C 0.040 3.960 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.584 5.584 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.179 4.179 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.156 14.906 -16.700 31.496 hybrid contribution -0.353 0.137 -0.663 0.764 sum 21.803 15.043 -17.364 31.673 Atomic orbital electron populations 1.21743 0.93172 1.03064 1.02577 1.20137 0.96876 0.87447 1.04430 1.22347 0.96336 0.97046 0.88159 1.77316 1.21255 0.89172 1.21466 1.48398 1.50326 1.12167 1.02624 1.22091 1.01959 0.86201 0.94599 1.21932 1.02540 0.91243 0.84263 1.98444 1.90156 1.41847 1.65444 1.19779 1.18526 0.93645 0.95295 1.17046 0.82500 0.77981 0.83955 1.90805 1.39669 1.42539 1.67221 1.45676 1.14341 1.61860 1.12943 1.21975 0.99359 0.96382 0.81238 0.87983 1.23299 0.95124 0.98039 1.00991 1.22822 0.94891 0.95948 1.00145 0.89602 1.20614 0.89140 0.92760 0.93495 1.42694 1.31504 1.55395 1.10472 1.19081 1.01995 1.20964 0.95191 0.89292 1.24682 0.97456 0.99706 0.97507 1.69704 1.17010 1.36378 1.35307 0.86528 0.76880 0.78484 0.86517 1.21057 1.21824 1.20388 1.23455 0.95243 0.96252 1.02952 0.91100 0.92117 0.92207 0.89435 0.89209 0.89646 0.88977 0.88146 0.76376 0.91159 0.88441 0.95319 0.95632 0.80733 0.93115 0.88768 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.05 -0.48 6.33 -27.88 -0.18 -0.65 16 3 C 0.13 1.43 6.52 -82.02 -0.53 0.90 16 4 N -0.27 -2.98 12.49 33.90 0.42 -2.55 16 5 N -0.35 -3.25 3.98 -64.32 -0.26 -3.51 16 6 C 0.09 0.43 11.28 59.85 0.67 1.10 16 7 C 0.16 1.60 7.54 -16.43 -0.12 1.48 16 8 Cl 0.01 0.11 28.57 -51.86 -1.48 -1.37 16 9 C -0.26 -3.00 5.88 -105.02 -0.62 -3.62 16 10 C 0.60 7.77 7.20 -12.57 -0.09 7.68 16 11 O -0.53 -8.62 16.71 5.26 0.09 -8.53 16 12 N -0.70 -7.76 5.26 -54.13 -0.28 -8.05 16 13 C 0.12 1.35 4.32 -67.12 -0.29 1.06 16 14 H 0.10 1.27 7.47 -51.93 -0.39 0.89 16 15 C -0.14 -1.50 7.39 -25.91 -0.19 -1.69 16 16 C -0.12 -1.67 3.63 -89.80 -0.33 -2.00 16 17 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.17 3.11 6.10 -4.04 -0.02 3.09 16 19 N -0.76 -17.80 5.41 -59.90 -0.32 -18.13 16 20 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 23 N -0.94 -29.59 13.97 55.49 0.78 -28.81 16 24 Si 0.89 22.11 27.74 -169.99 -4.71 17.40 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 28 C -0.14 -1.88 7.43 -25.92 -0.19 -2.07 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.91 8.01 -51.93 -0.42 0.49 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.29 7.78 -51.93 -0.40 -0.12 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 3.87 8.68 -40.82 -0.35 3.51 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -35.29 393.44 -8.47 -43.76 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.84 Total: 6.68 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.78 Total: -2.82 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.33 Total: -61.05 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.48 Total: -1.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.29 -8.47 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506902213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.178 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds