Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 N 1.30412 * 125.97438 * 270.00614 * 3 2 1 5 5 N 1.39931 * 108.95501 * 179.97438 * 4 3 2 6 6 C 1.46503 * 125.74733 * 179.97438 * 5 4 3 7 7 C 1.34351 * 108.50198 * 359.76288 * 5 4 3 8 8 Cl 1.73597 * 126.31874 * 180.23239 * 7 5 4 9 9 C 1.38278 * 107.36006 * 0.36674 * 7 5 4 10 10 C 1.47301 * 126.43429 * 179.89133 * 9 7 5 11 11 O 1.21619 * 120.00499 * 269.69711 * 10 9 7 12 12 N 1.34778 * 119.99784 * 89.69387 * 10 9 7 13 13 C 1.46499 * 119.99940 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.91032 * 23.75105 * 13 12 10 15 15 C 1.53784 * 113.61434 * 155.00095 * 13 12 10 16 16 C 1.53787 * 87.07923 * 89.11404 * 15 13 12 17 17 H 1.09000 * 113.61529 * 270.88430 * 16 15 13 18 18 C 1.53005 * 113.61178 * 140.06478 * 16 15 13 19 19 N 1.46499 * 109.46872 * 174.99760 * 18 16 15 20 20 C 1.36937 * 119.99436 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00642 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99635 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99880 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00020 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47628 * 89.99554 * 24 22 20 26 26 H 1.48501 * 109.47029 * 209.99883 * 24 22 20 27 27 H 1.48510 * 109.46907 * 329.99409 * 24 22 20 28 28 C 1.53779 * 113.61357 * 252.49697 * 13 12 10 29 29 H 1.09001 * 109.47773 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47363 * 299.99909 * 1 2 3 31 31 H 1.09007 * 109.47358 * 59.99591 * 1 2 3 32 32 H 1.08999 * 109.46685 * 239.99947 * 2 1 3 33 33 H 1.08996 * 109.47097 * 120.00795 * 2 1 3 34 34 H 1.09001 * 109.46757 * 90.02461 * 6 5 4 35 35 H 1.09003 * 109.46806 * 210.02138 * 6 5 4 36 36 H 1.08992 * 109.47059 * 330.02454 * 6 5 4 37 37 H 0.97000 * 119.99785 * 0.02562 * 12 10 9 38 38 H 1.09004 * 113.61451 * 334.56890 * 15 13 12 39 39 H 1.08994 * 113.61477 * 203.66192 * 15 13 12 40 40 H 1.08995 * 109.46809 * 295.00307 * 18 16 15 41 41 H 1.09006 * 109.46737 * 54.99803 * 18 16 15 42 42 H 0.96993 * 120.00253 * 0.02562 * 19 18 16 43 43 H 0.97001 * 119.99866 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.61307 * 156.33848 * 28 13 12 45 45 H 1.09007 * 113.61642 * 25.43606 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2877 2.1431 -1.0554 5 7 2.7333 3.4047 -0.6458 6 6 3.1224 4.5043 -1.5323 7 6 2.7397 3.4393 0.6972 8 17 3.2067 4.7855 1.6888 9 6 2.3086 2.2037 1.1438 10 6 2.1594 1.7843 2.5480 11 8 3.0907 1.2599 3.1283 12 7 0.9908 1.9817 3.1897 13 6 0.8425 1.5651 4.5863 14 1 1.7945 1.5016 5.1135 15 6 -0.2347 2.3509 5.3526 16 6 -1.2384 1.2888 4.8735 17 1 -1.6970 1.5233 3.9128 18 6 -2.2615 0.8880 5.9382 19 7 -3.2398 -0.0324 5.3534 20 6 -4.2578 -0.5290 6.1229 21 1 -4.3397 -0.2419 7.1608 22 6 -5.1845 -1.4015 5.5689 23 7 -6.1626 -1.8793 6.3087 24 14 -5.0424 -1.8987 3.7740 25 1 -4.1999 -3.1166 3.6627 26 1 -6.3950 -2.1811 3.2300 27 1 -4.4193 -0.7936 3.0021 28 6 -0.0462 0.3233 4.7677 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2500 5.1196 -1.7523 35 1 3.8827 5.1135 -1.0433 36 1 3.5239 4.0980 -2.4605 37 1 0.2479 2.3997 2.7267 38 1 -0.4228 3.3445 4.9456 39 1 -0.0864 2.3558 6.4324 40 1 -1.7505 0.3971 6.7664 41 1 -2.7734 1.7784 6.3036 42 1 -3.1660 -0.2905 4.4213 43 1 -6.8100 -2.4893 5.9217 44 1 0.1537 -0.2261 5.6877 45 1 -0.0821 -0.3202 3.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506902213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = 40.200339 kcal Electronic energy + Delta-G solvation = -27278.033277 eV Core-core repulsion = 23358.149963 eV Total energy + Delta-G solvation = -3919.883314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68832 -41.06337 -39.30655 -38.20338 -36.45243 -35.88475 -34.40790 -33.20357 -32.84958 -31.35866 -28.90502 -27.94483 -26.58553 -25.38727 -24.63734 -23.65291 -22.83800 -21.85810 -20.91875 -20.45386 -19.44430 -18.93818 -17.64325 -17.08389 -16.85512 -16.62527 -16.46590 -16.01899 -15.78681 -15.55268 -15.21628 -14.93520 -14.90942 -14.58974 -14.33931 -14.14441 -13.93109 -13.71857 -13.58237 -13.46517 -13.31296 -12.97218 -12.90597 -12.80282 -12.70560 -12.55473 -12.22377 -12.14623 -11.86065 -11.81913 -11.67798 -11.36780 -11.16437 -11.11431 -10.87084 -10.44046 -10.05757 -9.85733 -9.24657 -8.00616 -5.33239 0.09514 0.23572 1.10737 1.38962 1.39049 1.40550 1.43653 1.50747 2.18624 2.50896 3.16356 3.30824 3.50591 3.60830 3.61727 3.85604 3.92407 3.98721 4.09511 4.10934 4.15638 4.28007 4.32821 4.40732 4.53707 4.57276 4.59091 4.76841 4.90254 4.92077 4.95317 4.99857 5.02587 5.03363 5.10371 5.18081 5.29165 5.32243 5.36492 5.44664 5.67897 5.79149 6.23916 6.25237 6.47013 7.11388 7.14058 7.88887 8.07963 9.21233 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.002828 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.275110 B = 9899.130008 C =10991.805748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.120 3.880 4 N -0.285 5.285 5 N -0.347 5.347 6 C 0.079 3.921 7 C 0.159 3.841 8 Cl 0.028 6.972 9 C -0.281 4.281 10 C 0.607 3.393 11 O -0.567 6.567 12 N -0.687 5.687 13 C 0.124 3.876 14 H 0.097 0.903 15 C -0.118 4.118 16 C -0.115 4.115 17 H 0.093 0.907 18 C 0.163 3.837 19 N -0.757 5.757 20 C -0.234 4.234 21 H 0.054 0.946 22 C -0.068 4.068 23 N -0.987 5.987 24 Si 0.957 3.043 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.247 1.247 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.411 0.589 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.844 16.700 -18.340 33.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.046 4.046 4 N -0.108 5.108 5 N -0.128 5.128 6 C -0.059 4.059 7 C 0.000 4.000 8 Cl 0.056 6.944 9 C -0.297 4.297 10 C 0.392 3.608 11 O -0.445 6.445 12 N -0.337 5.337 13 C 0.019 3.981 14 H 0.115 0.885 15 C -0.156 4.156 16 C -0.134 4.134 17 H 0.111 0.889 18 C 0.037 3.963 19 N -0.403 5.403 20 C -0.365 4.365 21 H 0.072 0.928 22 C -0.259 4.259 23 N -0.637 5.637 24 Si 0.784 3.216 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.172 1.172 28 C -0.181 4.181 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.515 16.640 -19.023 34.521 hybrid contribution -0.723 -0.280 0.136 0.787 sum 22.792 16.360 -18.887 33.821 Atomic orbital electron populations 1.21712 0.92803 1.03333 1.02315 1.20147 0.97140 0.86967 1.04490 1.22515 0.96470 0.97534 0.88051 1.77266 1.21815 0.90055 1.21623 1.48753 1.48985 1.12322 1.02777 1.22516 1.03341 0.85446 0.94623 1.21998 1.01813 0.91301 0.84889 1.98449 1.89947 1.40907 1.65120 1.19739 1.20538 0.94726 0.94696 1.17193 0.82192 0.77082 0.84300 1.90782 1.41036 1.44472 1.68250 1.45600 1.14239 1.61152 1.12681 1.21829 0.99055 0.95661 0.81590 0.88472 1.23233 0.92783 0.98066 1.01551 1.22759 0.93974 0.97610 0.99039 0.88903 1.20807 0.89114 0.91492 0.94888 1.42715 1.31214 1.55935 1.10412 1.19072 1.02929 1.20252 0.94261 0.92789 1.25559 0.97310 1.00297 1.02766 1.69896 1.18378 1.37719 1.37748 0.85373 0.76738 0.78951 0.80533 1.20479 1.22368 1.17177 1.23462 0.95425 0.96701 1.02556 0.90548 0.92786 0.91969 0.88371 0.90121 0.87873 0.87299 0.86966 0.75231 0.89136 0.87550 0.95726 0.95839 0.80092 0.93404 0.89283 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.05 -0.88 6.33 29.85 0.19 -0.69 16 3 C 0.12 2.56 6.52 43.53 0.28 2.84 16 4 N -0.28 -5.83 12.49 -46.66 -0.58 -6.41 16 5 N -0.35 -5.67 3.98 -357.40 -1.42 -7.09 16 6 C 0.08 0.53 11.28 127.77 1.44 1.97 16 7 C 0.16 2.95 7.54 84.32 0.64 3.59 16 8 Cl 0.03 0.41 28.57 -2.72 -0.08 0.33 16 9 C -0.28 -6.23 5.88 -20.12 -0.12 -6.35 16 10 C 0.61 15.04 7.20 86.63 0.62 15.67 16 11 O -0.57 -18.32 16.71 -4.09 -0.07 -18.38 16 12 N -0.69 -14.01 5.26 -443.41 -2.33 -16.34 16 13 C 0.12 2.66 4.32 45.52 0.20 2.86 16 14 H 0.10 2.28 7.47 -2.39 -0.02 2.26 16 15 C -0.12 -2.28 7.39 31.12 0.23 -2.05 16 16 C -0.12 -2.97 3.63 -10.26 -0.04 -3.01 16 17 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 18 C 0.16 5.88 6.10 86.38 0.53 6.41 16 19 N -0.76 -34.92 5.41 -343.44 -1.86 -36.78 16 20 C -0.23 -13.46 10.47 84.03 0.88 -12.58 16 21 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.99 -63.86 13.97 21.65 0.30 -63.56 16 24 Si 0.96 45.32 27.74 68.60 1.90 47.23 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 28 C -0.14 -3.59 7.43 31.12 0.23 -3.36 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.60 8.01 -2.39 -0.02 1.58 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.11 0.37 7.78 -2.39 -0.02 0.35 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.41 6.92 8.68 -92.71 -0.81 6.11 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.37 15.97 5.53 -92.71 -0.51 15.46 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.09 2.34 7.90 -2.38 -0.02 2.32 16 45 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -77.20 393.44 1.77 -75.43 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.36 Total: 25.60 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.26 Total: -0.03 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -5.89 Total: -130.18 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.07 Total: -18.38 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -0.08 Total: 0.33 kcal Total: -77.20 1.77 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506902213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.629 kcal (2) G-P(sol) polarization free energy of solvation -77.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds