Wall clock time and date at job start Sat Apr 11 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34232 * 126.28175 * 2 1 4 4 H 0.97000 * 125.73607 * 0.25503 * 3 2 1 5 5 N 1.39927 * 108.52529 * 180.26179 * 3 2 1 6 6 C 1.30527 * 108.89547 * 359.97438 * 5 3 2 7 7 Cl 1.73599 * 126.00741 * 179.97438 * 6 5 3 8 8 C 1.38071 * 126.28085 * 180.30529 * 2 1 3 9 9 C 1.47384 * 126.42138 * 359.73737 * 8 2 1 10 10 O 1.21612 * 119.99776 * 90.00220 * 9 8 2 11 11 N 1.34769 * 120.00312 * 269.99566 * 9 8 2 12 12 C 1.46929 * 120.62784 * 359.72788 * 11 9 8 13 13 C 1.52768 * 109.00281 * 233.57544 * 12 11 9 14 14 C 1.53035 * 109.38554 * 305.58906 * 13 12 11 15 15 C 1.53030 * 109.53790 * 61.24265 * 14 13 12 16 16 H 1.08999 * 109.52940 * 58.60249 * 15 14 13 17 17 C 1.53001 * 109.49718 * 178.68153 * 15 14 13 18 18 N 1.46507 * 109.47126 * 184.83961 * 17 15 14 19 19 C 1.46495 * 120.00096 * 89.99974 * 18 17 15 20 20 C 1.36946 * 119.99684 * 269.99752 * 18 17 15 21 21 H 1.07996 * 119.99504 * 22.43065 * 20 18 17 22 22 C 1.38806 * 119.99769 * 202.43367 * 20 18 17 23 23 N 1.31622 * 120.00523 * 13.76172 * 22 20 18 24 24 Si 1.86802 * 119.99589 * 193.76658 * 22 20 18 25 25 H 1.48495 * 109.47375 * 60.00130 * 24 22 20 26 26 H 1.48501 * 109.46887 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47036 * 299.99622 * 24 22 20 28 28 C 1.46926 * 120.63107 * 180.02562 * 11 9 8 29 29 H 1.08999 * 109.47153 * 269.69322 * 1 2 3 30 30 H 1.08994 * 109.47005 * 29.69078 * 1 2 3 31 31 H 1.09001 * 109.46776 * 149.69552 * 1 2 3 32 32 H 1.08993 * 109.58763 * 353.41211 * 12 11 9 33 33 H 1.08999 * 109.58322 * 113.84400 * 12 11 9 34 34 H 1.09007 * 109.56227 * 185.55050 * 13 12 11 35 35 H 1.09000 * 109.38008 * 65.52074 * 13 12 11 36 36 H 1.09003 * 109.46104 * 301.21682 * 14 13 12 37 37 H 1.09006 * 109.45772 * 181.26123 * 14 13 12 38 38 H 1.09004 * 109.47501 * 304.83392 * 17 15 14 39 39 H 1.09000 * 109.47339 * 64.84217 * 17 15 14 40 40 H 1.09000 * 109.47232 * 95.13055 * 19 18 17 41 41 H 1.09000 * 109.46677 * 215.12957 * 19 18 17 42 42 H 1.08998 * 109.47236 * 335.13031 * 19 18 17 43 43 H 0.96999 * 120.00105 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.58683 * 246.15610 * 28 11 9 45 45 H 1.08997 * 109.59125 * 6.43813 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 0.0035 5 7 3.6340 0.6553 -0.0061 6 6 3.6599 -0.6497 -0.0091 7 17 5.0842 -1.6421 -0.0175 8 6 2.3241 -1.1130 -0.0059 9 6 1.8859 -2.5202 -0.0080 10 8 1.7012 -3.0980 -1.0620 11 7 1.6899 -3.1667 1.1581 12 6 1.9147 -2.4839 2.4396 13 6 2.8764 -3.3169 3.2851 14 6 2.3325 -4.7411 3.4183 15 6 2.2276 -5.3806 2.0320 16 1 3.2097 -5.3889 1.5593 17 6 1.7149 -6.8157 2.1690 18 7 1.7241 -7.4651 0.8558 19 6 2.9134 -8.1932 0.4070 20 6 0.6208 -7.3914 0.0478 21 1 -0.0948 -6.5940 0.1826 22 6 0.4225 -8.3418 -0.9442 23 7 1.1285 -9.4527 -0.9422 24 14 -0.8463 -8.0441 -2.2825 25 1 -0.4955 -6.8111 -3.0319 26 1 -0.8641 -9.2006 -3.2138 27 1 -2.1877 -7.8838 -1.6659 28 6 1.2537 -4.5696 1.1722 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3633 0.8927 -0.5090 31 1 -0.3633 -0.8873 -0.5186 32 1 2.3477 -1.5002 2.2584 33 1 0.9672 -2.3768 2.9676 34 1 2.9730 -2.8703 4.2748 35 1 3.8528 -3.3440 2.8014 36 1 1.3456 -4.7113 3.8802 37 1 3.0065 -5.3306 4.0401 38 1 2.3599 -7.3684 2.8521 39 1 0.6977 -6.8023 2.5606 40 1 2.7999 -9.2523 0.6385 41 1 3.0320 -8.0671 -0.6691 42 1 3.7932 -7.8019 0.9178 43 1 0.9901 -10.1166 -1.6357 44 1 0.2511 -4.6363 1.5947 45 1 1.2481 -4.9609 0.1549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566739179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:44 Heat of formation + Delta-G solvation = 53.317318 kcal Electronic energy + Delta-G solvation = -28667.692412 eV Core-core repulsion = 24748.377892 eV Total energy + Delta-G solvation = -3919.314520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80777 -39.58039 -37.34429 -36.96061 -35.40110 -33.05526 -32.87969 -31.55849 -31.41880 -30.00957 -27.89704 -25.90535 -25.73481 -25.12762 -22.49834 -22.24490 -22.14705 -20.66806 -19.54072 -18.87370 -17.78034 -16.76188 -16.47379 -15.78300 -15.45619 -15.27867 -14.85709 -14.78828 -14.40235 -14.05334 -13.67016 -13.48519 -13.45427 -13.27938 -13.04485 -12.81637 -12.59603 -12.36821 -12.20121 -12.13963 -11.88295 -11.64490 -11.11527 -10.93909 -10.92285 -10.75346 -10.69856 -10.50410 -10.28096 -10.20904 -10.06968 -9.82067 -9.71752 -9.66847 -9.52393 -8.90269 -8.40391 -8.28890 -6.61522 -5.60152 -3.05763 1.24628 1.27822 1.96958 2.60948 2.77001 3.35909 3.48830 3.54223 3.59803 4.20892 4.51041 4.61528 4.65199 4.89437 4.93771 5.05986 5.07150 5.18362 5.41132 5.43673 5.46644 5.48867 5.56668 5.62144 5.70403 5.83124 5.90008 6.00452 6.19114 6.19639 6.27856 6.38317 6.55594 6.66365 6.67000 6.83013 6.89078 6.95878 6.99923 7.07295 7.50733 7.70492 7.83254 7.91939 8.46405 8.51507 9.35724 10.00142 10.48594 11.44530 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003899 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.119397 B = 7178.975818 C = 7851.993766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.137 3.863 3 N -0.450 5.450 4 H 0.447 0.553 5 N -0.278 5.278 6 C 0.159 3.841 7 Cl 0.024 6.976 8 C -0.257 4.257 9 C 0.589 3.411 10 O -0.518 6.518 11 N -0.599 5.599 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.113 4.113 15 C -0.120 4.120 16 H 0.066 0.934 17 C 0.159 3.841 18 N -0.601 5.601 19 C 0.164 3.836 20 C -0.250 4.250 21 H 0.069 0.931 22 C 0.004 3.996 23 N -0.908 5.908 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.284 1.284 28 C 0.123 3.877 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.040 0.960 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.060 0.940 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 22.003 8.952 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.005 3.995 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.104 5.104 6 C -0.034 4.034 7 Cl 0.052 6.948 8 C -0.272 4.272 9 C 0.374 3.626 10 O -0.393 6.393 11 N -0.332 5.332 12 C -0.011 4.011 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.142 4.142 16 H 0.085 0.915 17 C 0.031 3.969 18 N -0.324 5.324 19 C 0.020 3.980 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.553 5.553 24 Si 0.727 3.273 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.210 1.210 28 C 0.002 3.998 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.442 22.430 8.234 24.018 hybrid contribution -0.931 -0.074 -0.731 1.187 sum 1.511 22.356 7.503 23.630 Atomic orbital electron populations 1.20633 0.85657 1.05195 1.04383 1.21411 0.94859 0.85935 0.97266 1.45812 1.03035 1.08544 1.58547 0.70709 1.77136 0.96510 1.10732 1.26037 1.22593 0.89029 0.90412 1.01368 1.98438 1.35036 1.64679 1.96666 1.19901 0.91100 0.94906 1.21328 1.17153 0.77427 0.84106 0.83895 1.90869 1.50319 1.67353 1.30724 1.48195 1.66530 1.13608 1.04873 1.21520 0.99179 0.95786 0.84607 1.21823 0.99341 0.96627 0.99324 1.21549 1.00858 0.94777 0.97946 1.22242 0.99940 0.98171 0.93888 0.91526 1.20708 0.98511 0.89581 0.88127 1.43879 1.13075 1.61394 1.14021 1.20755 0.84652 0.95033 0.97609 1.19107 1.01130 1.06762 1.10969 0.91352 1.24954 0.98785 0.95139 1.00564 1.70064 1.43326 1.07515 1.34435 0.86443 0.81284 0.77261 0.82308 1.20756 1.21776 1.21049 1.21900 0.96129 0.77254 1.04532 0.89029 0.90009 0.88545 0.90865 0.91719 0.91369 0.91634 0.92092 0.92016 0.94351 0.93483 0.95254 0.94169 0.98627 0.93874 0.92207 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.25 36.01 0.37 -0.32 16 2 C 0.14 1.37 7.29 -81.60 -0.60 0.77 16 3 N -0.45 -3.89 7.28 33.86 0.25 -3.64 16 4 H 0.45 2.01 8.96 -182.73 -1.64 0.37 16 5 N -0.28 -3.40 12.64 33.18 0.42 -2.98 16 6 C 0.16 2.18 7.79 -16.91 -0.13 2.05 16 7 Cl 0.02 0.33 29.19 -51.86 -1.51 -1.18 16 8 C -0.26 -3.55 3.86 -105.04 -0.41 -3.95 16 9 C 0.59 10.05 7.06 -12.54 -0.09 9.96 16 10 O -0.52 -11.37 16.52 5.27 0.09 -11.28 16 11 N -0.60 -9.21 2.98 -174.34 -0.52 -9.73 16 12 C 0.11 1.29 6.31 -3.93 -0.02 1.27 16 13 C -0.13 -1.49 6.06 -26.83 -0.16 -1.65 16 14 C -0.11 -1.45 5.17 -26.70 -0.14 -1.59 16 15 C -0.12 -2.05 2.54 -90.53 -0.23 -2.28 16 16 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 17 C 0.16 3.17 5.15 -4.04 -0.02 3.15 16 18 N -0.60 -15.10 2.81 -181.12 -0.51 -15.61 16 19 C 0.16 4.17 8.98 59.84 0.54 4.71 16 20 C -0.25 -6.87 8.24 -15.06 -0.12 -6.99 16 21 H 0.07 1.82 6.81 -52.49 -0.36 1.46 16 22 C 0.00 0.11 5.09 -17.43 -0.09 0.02 16 23 N -0.91 -27.12 10.72 55.49 0.59 -26.53 16 24 Si 0.90 22.72 29.58 -169.99 -5.03 17.69 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.12 2.21 4.66 -3.73 -0.02 2.19 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.87 7.96 -51.93 -0.41 0.45 16 32 H 0.07 0.79 6.26 -51.93 -0.33 0.47 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 40 H 0.03 0.80 7.35 -51.93 -0.38 0.42 16 41 H 0.04 1.11 7.32 -51.93 -0.38 0.73 16 42 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 2.65 5.41 -51.93 -0.28 2.37 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -34.68 377.30 -9.63 -44.31 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.97 Total: -4.06 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.12 Total: 7.33 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.23 Total: -58.49 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.68 -9.63 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566739179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.626 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds