Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34226 * 126.28107 * 2 1 4 4 H 0.96997 * 125.73971 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.52120 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.89788 * 359.74860 * 5 3 2 7 7 Cl 1.73601 * 126.00829 * 180.25986 * 6 5 3 8 8 C 1.38071 * 126.27959 * 179.97438 * 2 1 3 9 9 C 1.47384 * 126.41953 * 359.97438 * 8 2 1 10 10 O 1.21609 * 120.00101 * 90.01073 * 9 8 2 11 11 N 1.34783 * 119.99988 * 269.99971 * 9 8 2 12 12 C 1.46919 * 120.63144 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.89273 * 233.55709 * 12 11 9 14 14 C 1.53070 * 109.29524 * 305.57804 * 13 12 11 15 15 C 1.53039 * 109.65812 * 61.15209 * 14 13 12 16 16 H 1.09001 * 109.49731 * 58.65147 * 15 14 13 17 17 C 1.53005 * 109.49929 * 178.74923 * 15 14 13 18 18 H 1.08999 * 109.46978 * 304.84010 * 17 15 14 19 19 C 1.52994 * 109.47019 * 64.84044 * 17 15 14 20 20 N 1.46501 * 109.47332 * 184.84278 * 17 15 14 21 21 C 1.36933 * 120.00168 * 155.00285 * 20 17 15 22 22 H 1.08003 * 120.00016 * 359.97438 * 21 20 17 23 23 C 1.38820 * 119.99913 * 179.97438 * 21 20 17 24 24 N 1.31615 * 119.99566 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99899 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47261 * 89.99489 * 25 23 21 27 27 H 1.48493 * 109.47072 * 209.99893 * 25 23 21 28 28 H 1.48504 * 109.47356 * 329.99989 * 25 23 21 29 29 C 1.46928 * 120.62874 * 180.02562 * 11 9 8 30 30 H 1.08997 * 109.46811 * 270.02640 * 1 2 3 31 31 H 1.09000 * 109.46921 * 30.01928 * 1 2 3 32 32 H 1.09000 * 109.47294 * 150.02667 * 1 2 3 33 33 H 1.09002 * 109.58751 * 353.41659 * 12 11 9 34 34 H 1.08996 * 109.58750 * 113.69843 * 12 11 9 35 35 H 1.08997 * 109.50046 * 65.38734 * 13 12 11 36 36 H 1.09003 * 109.49733 * 185.48713 * 13 12 11 37 37 H 1.09007 * 109.35101 * 301.12962 * 14 13 12 38 38 H 1.09000 * 109.44413 * 181.23506 * 14 13 12 39 39 H 1.09002 * 109.46942 * 180.02562 * 19 17 15 40 40 H 1.09008 * 109.47228 * 299.99584 * 19 17 15 41 41 H 1.08999 * 109.47273 * 60.00147 * 19 17 15 42 42 H 0.97002 * 119.99955 * 334.99623 * 20 17 15 43 43 H 0.97004 * 119.99051 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.58787 * 246.16207 * 29 11 9 45 45 H 1.08999 * 109.58470 * 6.58560 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0046 -0.0004 5 7 3.6339 0.6552 0.0006 6 6 3.6599 -0.6498 0.0064 7 17 5.0842 -1.6423 0.0158 8 6 2.3240 -1.1130 0.0005 9 6 1.8857 -2.5202 0.0017 10 8 1.7047 -3.1016 -1.0510 11 7 1.6857 -3.1628 1.1694 12 6 1.8999 -2.4738 2.4493 13 6 2.8628 -3.3036 3.3043 14 6 2.3209 -4.7290 3.4374 15 6 2.2215 -5.3734 2.0529 16 1 3.2056 -5.3821 1.5842 17 6 1.7091 -6.8083 2.1930 18 1 2.3519 -7.3581 2.8804 19 6 0.2794 -6.7883 2.7372 20 7 1.7237 -7.4622 0.8821 21 6 1.8126 -8.8261 0.7983 22 1 1.8725 -9.4197 1.6986 23 6 1.8259 -9.4457 -0.4438 24 7 1.7524 -8.7223 -1.5409 25 14 1.9480 -11.3062 -0.5582 26 1 0.5838 -11.8929 -0.5566 27 1 2.6462 -11.6801 -1.8143 28 1 2.7111 -11.8247 0.6055 29 6 1.2494 -4.5657 1.1867 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 2.3296 -1.4888 2.2666 34 1 0.9486 -2.3664 2.9702 35 1 3.8419 -3.3319 2.8261 36 1 2.9529 -2.8525 4.2925 37 1 1.3322 -4.6982 3.8954 38 1 2.9931 -5.3157 4.0636 39 1 -0.0855 -7.8106 2.8374 40 1 0.2686 -6.3018 3.7126 41 1 -0.3634 -6.2385 2.0497 42 1 1.6702 -6.9291 0.0735 43 1 1.7613 -9.1554 -2.4088 44 1 0.2453 -4.6309 1.6059 45 1 1.2498 -4.9610 0.1709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568407113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = 40.091622 kcal Electronic energy + Delta-G solvation = -28369.920288 eV Core-core repulsion = 24450.032259 eV Total energy + Delta-G solvation = -3919.888029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85430 -39.78109 -37.65251 -36.98033 -35.34767 -33.05724 -32.88306 -31.81890 -31.51869 -29.71178 -28.07968 -27.59218 -25.42068 -24.42788 -23.10391 -22.32717 -22.19937 -20.91303 -19.22105 -18.60351 -17.87872 -17.13211 -16.66320 -15.89664 -15.48362 -15.38522 -14.89660 -14.73130 -14.55093 -14.09507 -13.81020 -13.68879 -13.53021 -13.45536 -12.92392 -12.86772 -12.64646 -12.60231 -12.39920 -12.16607 -11.91664 -11.84829 -11.47559 -11.08276 -10.95600 -10.93641 -10.80387 -10.57075 -10.38261 -10.19141 -10.16151 -9.90206 -9.73552 -9.68566 -9.47218 -8.95734 -8.82698 -8.36901 -6.86487 -5.65631 -2.95055 1.21173 1.25328 1.92776 2.56435 2.68119 3.23782 3.49452 3.54178 3.56444 4.16070 4.46452 4.57866 4.65493 4.82980 4.86896 4.99955 5.01204 5.10851 5.29120 5.37192 5.40535 5.41474 5.51669 5.62699 5.67095 5.73068 5.82904 5.91758 5.94425 6.03356 6.16001 6.20025 6.30732 6.43565 6.47258 6.63272 6.64567 6.71143 6.83509 6.96251 6.97020 7.18717 7.56390 7.78607 8.35107 8.52032 9.62931 10.21621 10.55712 11.56438 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003211 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.515616 B = 8718.753936 C = 9094.586768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.138 3.862 3 N -0.449 5.449 4 H 0.447 0.553 5 N -0.278 5.278 6 C 0.159 3.841 7 Cl 0.026 6.974 8 C -0.258 4.258 9 C 0.591 3.409 10 O -0.517 6.517 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.134 4.134 14 C -0.113 4.113 15 C -0.104 4.104 16 H 0.075 0.925 17 C 0.181 3.819 18 H 0.048 0.952 19 C -0.169 4.169 20 N -0.725 5.725 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.116 3.884 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 23.533 10.122 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.006 3.994 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.103 5.103 6 C -0.034 4.034 7 Cl 0.054 6.946 8 C -0.274 4.274 9 C 0.376 3.624 10 O -0.392 6.392 11 N -0.332 5.332 12 C -0.011 4.011 13 C -0.172 4.172 14 C -0.151 4.151 15 C -0.124 4.124 16 H 0.093 0.907 17 C 0.070 3.930 18 H 0.066 0.934 19 C -0.229 4.229 20 N -0.367 5.367 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 C -0.005 4.005 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.813 23.952 9.544 25.797 hybrid contribution -0.295 -1.114 -0.356 1.206 sum -1.108 22.838 9.189 24.642 Atomic orbital electron populations 1.20635 0.85650 1.05227 1.04362 1.21404 0.94850 0.85939 0.97206 1.45820 1.03051 1.08564 1.58452 0.70671 1.77155 0.96466 1.10736 1.25969 1.22613 0.89082 0.90432 1.01267 1.98446 1.34971 1.64580 1.96640 1.19842 0.91141 0.94734 1.21644 1.17174 0.77265 0.84230 0.83766 1.90872 1.50316 1.67161 1.30850 1.48089 1.66819 1.13138 1.05122 1.21627 0.99326 0.95789 0.84340 1.21921 0.99407 0.96443 0.99470 1.21602 1.01339 0.94765 0.97370 1.21790 0.99897 0.95839 0.94868 0.90673 1.20167 0.93724 0.89626 0.89476 0.93369 1.22575 1.00264 1.01318 0.98741 1.42497 1.88250 1.04255 1.01704 1.19208 1.42480 0.83151 0.92195 0.91310 1.24739 1.03127 0.97548 0.95488 1.69678 1.57309 1.33846 0.96823 0.86245 0.77441 0.85956 0.76860 1.21854 1.21870 1.20873 1.21897 0.97180 0.78253 1.03169 0.89027 0.89969 0.88567 0.90658 0.91555 0.91437 0.91103 0.91571 0.91660 0.92952 0.94354 0.93224 0.78036 0.93539 0.90975 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.25 36.01 0.37 -0.23 16 2 C 0.14 1.28 7.29 -81.61 -0.60 0.68 16 3 N -0.45 -3.64 7.28 33.86 0.25 -3.39 16 4 H 0.45 1.78 8.96 -182.73 -1.64 0.15 16 5 N -0.28 -3.26 12.64 33.18 0.42 -2.84 16 6 C 0.16 2.10 7.79 -16.91 -0.13 1.97 16 7 Cl 0.03 0.35 29.19 -51.86 -1.51 -1.16 16 8 C -0.26 -3.37 3.86 -105.04 -0.41 -3.78 16 9 C 0.59 9.46 7.05 -12.54 -0.09 9.37 16 10 O -0.52 -10.75 16.52 5.27 0.09 -10.67 16 11 N -0.60 -8.46 2.97 -174.03 -0.52 -8.98 16 12 C 0.11 1.18 6.33 -3.71 -0.02 1.16 16 13 C -0.13 -1.41 6.09 -26.59 -0.16 -1.57 16 14 C -0.11 -1.38 4.88 -26.67 -0.13 -1.51 16 15 C -0.10 -1.69 2.28 -90.48 -0.21 -1.90 16 16 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 17 C 0.18 3.50 2.67 -67.93 -0.18 3.32 16 18 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 19 C -0.17 -2.92 8.77 37.15 0.33 -2.59 16 20 N -0.73 -18.28 5.06 -53.42 -0.27 -18.55 16 21 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 25 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.12 1.91 5.18 -3.69 -0.02 1.89 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.08 0.75 6.26 -51.93 -0.32 0.42 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.75 6.63 -51.93 -0.34 0.40 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.54 6.59 -51.92 -0.34 0.19 16 41 H 0.05 0.86 6.23 -51.93 -0.32 0.53 16 42 H 0.39 10.52 6.47 -40.82 -0.26 10.25 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.07 1.10 6.06 -51.93 -0.31 0.78 16 45 H 0.10 2.09 5.82 -51.93 -0.30 1.78 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -35.39 375.79 -9.29 -44.68 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.61 Total: 6.13 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.49 Total: -0.51 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.60 Total: -61.94 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.51 Total: -1.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.39 -9.29 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568407113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.769 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds