Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34226 * 126.28107 * 2 1 4 4 H 0.96997 * 125.73971 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.52120 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.89788 * 359.74860 * 5 3 2 7 7 Cl 1.73601 * 126.00829 * 180.25986 * 6 5 3 8 8 C 1.38071 * 126.27959 * 179.97438 * 2 1 3 9 9 C 1.47384 * 126.41953 * 359.97438 * 8 2 1 10 10 O 1.21609 * 120.00101 * 90.01073 * 9 8 2 11 11 N 1.34783 * 119.99988 * 269.99971 * 9 8 2 12 12 C 1.46919 * 120.63144 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.89273 * 233.55709 * 12 11 9 14 14 C 1.53070 * 109.29524 * 305.57804 * 13 12 11 15 15 C 1.53039 * 109.65812 * 61.15209 * 14 13 12 16 16 H 1.09001 * 109.49731 * 58.65147 * 15 14 13 17 17 C 1.53005 * 109.49929 * 178.74923 * 15 14 13 18 18 H 1.08999 * 109.46978 * 304.84010 * 17 15 14 19 19 C 1.52994 * 109.47019 * 64.84044 * 17 15 14 20 20 N 1.46501 * 109.47332 * 184.84278 * 17 15 14 21 21 C 1.36933 * 120.00168 * 155.00285 * 20 17 15 22 22 H 1.08003 * 120.00016 * 359.97438 * 21 20 17 23 23 C 1.38820 * 119.99913 * 179.97438 * 21 20 17 24 24 N 1.31615 * 119.99566 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99899 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47261 * 89.99489 * 25 23 21 27 27 H 1.48493 * 109.47072 * 209.99893 * 25 23 21 28 28 H 1.48504 * 109.47356 * 329.99989 * 25 23 21 29 29 C 1.46928 * 120.62874 * 180.02562 * 11 9 8 30 30 H 1.08997 * 109.46811 * 270.02640 * 1 2 3 31 31 H 1.09000 * 109.46921 * 30.01928 * 1 2 3 32 32 H 1.09000 * 109.47294 * 150.02667 * 1 2 3 33 33 H 1.09002 * 109.58751 * 353.41659 * 12 11 9 34 34 H 1.08996 * 109.58750 * 113.69843 * 12 11 9 35 35 H 1.08997 * 109.50046 * 65.38734 * 13 12 11 36 36 H 1.09003 * 109.49733 * 185.48713 * 13 12 11 37 37 H 1.09007 * 109.35101 * 301.12962 * 14 13 12 38 38 H 1.09000 * 109.44413 * 181.23506 * 14 13 12 39 39 H 1.09002 * 109.46942 * 180.02562 * 19 17 15 40 40 H 1.09008 * 109.47228 * 299.99584 * 19 17 15 41 41 H 1.08999 * 109.47273 * 60.00147 * 19 17 15 42 42 H 0.97002 * 119.99955 * 334.99623 * 20 17 15 43 43 H 0.97004 * 119.99051 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.58787 * 246.16207 * 29 11 9 45 45 H 1.08999 * 109.58470 * 6.58560 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0046 -0.0004 5 7 3.6339 0.6552 0.0006 6 6 3.6599 -0.6498 0.0064 7 17 5.0842 -1.6423 0.0158 8 6 2.3240 -1.1130 0.0005 9 6 1.8857 -2.5202 0.0017 10 8 1.7047 -3.1016 -1.0510 11 7 1.6857 -3.1628 1.1694 12 6 1.8999 -2.4738 2.4493 13 6 2.8628 -3.3036 3.3043 14 6 2.3209 -4.7290 3.4374 15 6 2.2215 -5.3734 2.0529 16 1 3.2056 -5.3821 1.5842 17 6 1.7091 -6.8083 2.1930 18 1 2.3519 -7.3581 2.8804 19 6 0.2794 -6.7883 2.7372 20 7 1.7237 -7.4622 0.8821 21 6 1.8126 -8.8261 0.7983 22 1 1.8725 -9.4197 1.6986 23 6 1.8259 -9.4457 -0.4438 24 7 1.7524 -8.7223 -1.5409 25 14 1.9480 -11.3062 -0.5582 26 1 0.5838 -11.8929 -0.5566 27 1 2.6462 -11.6801 -1.8143 28 1 2.7111 -11.8247 0.6055 29 6 1.2494 -4.5657 1.1867 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 2.3296 -1.4888 2.2666 34 1 0.9486 -2.3664 2.9702 35 1 3.8419 -3.3319 2.8261 36 1 2.9529 -2.8525 4.2925 37 1 1.3322 -4.6982 3.8954 38 1 2.9931 -5.3157 4.0636 39 1 -0.0855 -7.8106 2.8374 40 1 0.2686 -6.3018 3.7126 41 1 -0.3634 -6.2385 2.0497 42 1 1.6702 -6.9291 0.0735 43 1 1.7613 -9.1554 -2.4088 44 1 0.2453 -4.6309 1.6059 45 1 1.2498 -4.9610 0.1709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568407113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 14.754544 kcal Electronic energy + Delta-G solvation = -28371.018986 eV Core-core repulsion = 24450.032259 eV Total energy + Delta-G solvation = -3920.986727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.73373 -40.96775 -39.01377 -37.97880 -36.87788 -34.63786 -33.75800 -33.19917 -32.44988 -31.33380 -29.41811 -28.54329 -26.52205 -26.18969 -24.62324 -23.33623 -23.08982 -22.12841 -20.44451 -19.79998 -19.20651 -18.70966 -17.81894 -17.01712 -16.66691 -16.39352 -16.32960 -15.96555 -15.79220 -15.47280 -15.27555 -15.09105 -14.62182 -14.18848 -14.11612 -14.06144 -13.88344 -13.78129 -13.39359 -13.26620 -13.03033 -12.93480 -12.84011 -12.81630 -12.62830 -12.30043 -12.08188 -11.93170 -11.86845 -11.75469 -11.70396 -11.36392 -11.16258 -11.00124 -10.89327 -10.57595 -9.85965 -9.57091 -8.96740 -7.89109 -5.18044 0.33645 0.42344 0.96019 1.46147 1.46291 1.48852 1.57017 1.80764 2.17468 2.58501 3.39440 3.43642 3.62258 3.76944 3.84949 3.91801 3.98383 4.04827 4.13535 4.25034 4.35124 4.44327 4.60696 4.63441 4.64506 4.67100 4.75179 4.77228 4.87057 4.93818 4.96539 5.06068 5.14281 5.16806 5.18618 5.29809 5.41795 5.49441 5.56081 5.60881 5.74625 5.95324 6.23010 6.32052 6.42389 7.15865 7.37103 8.16722 8.37551 9.34358 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003211 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.515616 B = 8718.753936 C = 9094.586768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.167 3.833 3 N -0.423 5.423 4 H 0.468 0.532 5 N -0.290 5.290 6 C 0.146 3.854 7 Cl 0.009 6.991 8 C -0.293 4.293 9 C 0.592 3.408 10 O -0.582 6.582 11 N -0.592 5.592 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.105 4.105 15 C -0.092 4.092 16 H 0.039 0.961 17 C 0.172 3.828 18 H 0.045 0.955 19 C -0.156 4.156 20 N -0.741 5.741 21 C -0.234 4.234 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.268 1.268 29 C 0.125 3.875 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.090 0.910 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 25.833 13.453 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.033 3.967 3 N -0.135 5.135 4 H 0.319 0.681 5 N -0.116 5.116 6 C -0.045 4.045 7 Cl 0.037 6.963 8 C -0.308 4.308 9 C 0.379 3.621 10 O -0.462 6.462 11 N -0.323 5.323 12 C -0.013 4.013 13 C -0.168 4.168 14 C -0.143 4.143 15 C -0.113 4.113 16 H 0.058 0.942 17 C 0.064 3.936 18 H 0.063 0.937 19 C -0.216 4.216 20 N -0.382 5.382 21 C -0.366 4.366 22 H 0.096 0.904 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.801 3.199 26 H -0.214 1.214 27 H -0.227 1.227 28 H -0.192 1.192 29 C 0.003 3.997 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.202 0.798 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.159 26.311 12.991 29.423 hybrid contribution 0.098 -1.707 -1.312 2.155 sum -2.061 24.604 11.679 27.313 Atomic orbital electron populations 1.20834 0.82863 1.05814 1.06342 1.21774 0.96093 0.84809 0.94033 1.45814 1.01699 1.09475 1.56552 0.68118 1.77097 0.98408 1.09837 1.26255 1.22601 0.88638 0.90870 1.02440 1.98432 1.35905 1.65223 1.96771 1.19653 0.91842 0.93948 1.25393 1.17603 0.76071 0.85284 0.83182 1.90835 1.53253 1.68884 1.33180 1.48152 1.65670 1.12131 1.06396 1.21960 1.01136 0.95779 0.82440 1.21924 0.98221 0.95388 1.01233 1.21579 1.03036 0.95568 0.94106 1.21611 0.97623 0.94437 0.97583 0.94198 1.20471 0.95411 0.90951 0.86757 0.93705 1.22390 0.97754 1.00666 1.00777 1.42780 1.88315 1.03588 1.03481 1.19649 1.40002 0.84648 0.92333 0.90441 1.25580 1.04298 1.02124 0.95299 1.69874 1.59833 1.35569 0.97078 0.85165 0.77442 0.80598 0.76739 1.21383 1.22709 1.19229 1.21605 0.98155 0.79715 1.00268 0.86154 0.86571 0.90743 0.89601 0.88260 0.93322 0.87297 0.89224 0.90965 0.94861 0.89909 0.93536 0.79845 0.94357 0.89234 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.25 71.24 0.73 -0.13 16 2 C 0.17 2.68 7.29 42.15 0.31 2.99 16 3 N -0.42 -5.61 7.28 -46.79 -0.34 -5.95 16 4 H 0.47 1.91 8.96 -213.43 -1.91 0.00 16 5 N -0.29 -6.38 12.64 -48.95 -0.62 -7.00 16 6 C 0.15 3.85 7.79 85.66 0.67 4.51 16 7 Cl 0.01 0.25 29.19 -2.72 -0.08 0.17 16 8 C -0.29 -7.51 3.86 -20.13 -0.08 -7.59 16 9 C 0.59 19.60 7.05 86.65 0.61 20.21 16 10 O -0.58 -26.15 16.52 -4.06 -0.07 -26.21 16 11 N -0.59 -16.65 2.97 -822.77 -2.45 -19.10 16 12 C 0.11 1.96 6.33 86.36 0.55 2.50 16 13 C -0.13 -2.32 6.09 30.68 0.19 -2.13 16 14 C -0.11 -2.27 4.88 30.63 0.15 -2.12 16 15 C -0.09 -3.03 2.28 -10.70 -0.02 -3.06 16 16 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 17 C 0.17 6.72 2.67 44.99 0.12 6.84 16 18 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 19 C -0.16 -5.15 8.77 71.98 0.63 -4.52 16 20 N -0.74 -38.93 5.06 -322.93 -1.63 -40.57 16 21 C -0.23 -13.45 9.93 84.04 0.83 -12.62 16 22 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 24 N -0.97 -63.46 13.06 21.65 0.28 -63.17 16 25 Si 0.97 48.14 29.55 68.60 2.03 50.16 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 29 C 0.12 4.21 5.18 86.37 0.45 4.66 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 33 H 0.09 1.45 6.26 -2.39 -0.01 1.43 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.57 6.63 -2.38 -0.02 1.55 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.99 6.59 -2.38 -0.02 1.97 16 41 H 0.05 1.55 6.23 -2.39 -0.01 1.54 16 42 H 0.37 21.60 6.47 -92.71 -0.60 21.00 16 43 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.09 2.66 6.06 -2.39 -0.01 2.65 16 45 H 0.05 2.17 5.82 -2.39 -0.01 2.16 16 Total: -1.00 -84.45 375.79 1.25 -83.20 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -1.47 Total: 23.33 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.60 Total: 5.13 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -4.76 Total: -135.79 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.07 Total: -26.21 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -84.45 1.25 -83.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568407113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.953 kcal (2) G-P(sol) polarization free energy of solvation -84.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds