Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34233 * 126.28066 * 2 1 4 4 H 0.96998 * 125.73976 * 359.96612 * 3 2 1 5 5 N 1.39928 * 108.52427 * 179.97438 * 3 2 1 6 6 C 1.30538 * 108.89407 * 359.75307 * 5 3 2 7 7 Cl 1.73595 * 126.00502 * 180.26206 * 6 5 3 8 8 C 1.38071 * 126.28011 * 179.97438 * 2 1 3 9 9 C 1.47386 * 126.42324 * 359.96652 * 8 2 1 10 10 O 1.21609 * 119.99588 * 89.99847 * 9 8 2 11 11 N 1.34774 * 120.00079 * 269.99788 * 9 8 2 12 12 C 1.46496 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47054 * 34.99632 * 12 11 9 14 14 C 1.53005 * 109.46832 * 275.00231 * 12 11 9 15 15 C 1.52999 * 109.47159 * 299.99302 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.47294 * 154.99900 * 12 11 9 19 19 H 1.09002 * 109.46695 * 179.97438 * 18 12 11 20 20 C 1.52997 * 109.47232 * 299.99951 * 18 12 11 21 21 N 1.46501 * 109.46866 * 184.99942 * 20 18 12 22 22 C 1.36935 * 119.99654 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00358 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00100 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99683 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00126 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46737 * 59.99932 * 26 24 22 28 28 H 1.48495 * 109.46855 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47262 * 300.00004 * 26 24 22 30 30 H 1.09002 * 109.47205 * 270.00265 * 1 2 3 31 31 H 1.09003 * 109.47023 * 30.00038 * 1 2 3 32 32 H 1.08998 * 109.47442 * 149.99884 * 1 2 3 33 33 H 0.97001 * 119.99990 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47360 * 59.99916 * 14 12 11 35 35 H 1.09002 * 109.46935 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 38 38 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 39 39 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 41 41 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.47223 * 304.99821 * 20 18 12 43 43 H 1.09001 * 109.46547 * 65.00156 * 20 18 12 44 44 H 0.96998 * 120.00018 * 0.02562 * 21 20 18 45 45 H 0.96996 * 119.99982 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6339 0.6553 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6421 0.0157 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0018 10 8 1.7045 -3.1016 -1.0508 11 7 1.6860 -3.1627 1.1696 12 6 1.2510 -4.5616 1.1710 13 1 1.7057 -5.0843 0.3294 14 6 -0.2727 -4.6219 1.0457 15 6 -0.9110 -3.8883 2.2269 16 6 -0.4799 -4.5552 3.5347 17 6 1.0438 -4.4948 3.6599 18 6 1.6821 -5.2285 2.4787 19 1 1.3580 -6.2692 2.4798 20 6 3.2057 -5.1682 2.6039 21 7 3.6275 -5.9100 3.7947 22 6 4.9566 -5.9944 4.1137 23 1 5.6938 -5.5144 3.4872 24 6 5.3564 -6.6977 5.2417 25 7 4.4580 -7.2831 6.0049 26 14 7.1695 -6.8134 5.6764 27 1 7.7146 -5.4490 5.8923 28 1 7.3308 -7.6126 6.9175 29 1 7.9040 -7.4698 4.5653 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.8303 -2.6989 2.0092 34 1 -0.5798 -4.1468 0.1140 35 1 -0.5964 -5.6628 1.0462 36 1 -1.9964 -3.9309 2.1374 37 1 -0.5873 -2.8475 2.2259 38 1 -0.8036 -5.5961 3.5357 39 1 -0.9343 -4.0323 4.3762 40 1 1.3674 -3.4541 3.6589 41 1 1.3508 -4.9704 4.5914 42 1 3.6609 -5.6126 1.7188 43 1 3.5220 -4.1288 2.6923 44 1 2.9654 -6.3414 4.3572 45 1 4.7373 -7.7749 6.7929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569162898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = 22.788332 kcal Electronic energy + Delta-G solvation = -28235.126702 eV Core-core repulsion = 24314.488346 eV Total energy + Delta-G solvation = -3920.638356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79374 -40.01671 -37.91912 -36.91965 -34.60836 -33.55348 -33.02065 -31.91264 -31.58813 -29.82189 -29.34368 -27.73584 -25.20830 -23.36107 -22.88452 -22.20049 -21.98960 -20.69983 -20.06284 -18.89259 -18.25158 -17.17361 -16.64008 -15.92274 -15.46165 -15.41593 -15.19714 -14.73217 -14.60079 -14.16300 -14.04227 -13.65355 -13.51126 -13.34593 -13.18973 -13.02498 -12.83868 -12.64124 -12.11179 -12.05193 -11.95947 -11.88012 -11.64461 -11.37886 -10.92689 -10.86253 -10.85392 -10.69399 -10.34055 -10.19584 -9.96188 -9.90976 -9.82751 -9.69292 -9.57874 -9.03644 -8.87978 -8.78204 -6.86904 -5.72795 -3.00438 1.22617 1.30284 1.94618 2.56260 2.63588 3.40502 3.47318 3.51535 3.52685 4.15366 4.46988 4.60826 4.68794 4.84917 4.90761 4.94861 4.97715 5.00390 5.27607 5.34361 5.35730 5.36830 5.58048 5.61915 5.64910 5.68147 5.72827 5.77220 5.85216 6.06761 6.16463 6.19100 6.27295 6.29525 6.40964 6.51641 6.63744 6.64700 6.71759 6.86858 6.93840 6.98306 7.62649 7.74641 8.30832 8.46656 9.57926 10.15947 10.50855 11.50127 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.003940 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.537455 B = 7104.320801 C = 9016.017949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 N -0.449 5.449 4 H 0.447 0.553 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.030 6.970 8 C -0.268 4.268 9 C 0.598 3.402 10 O -0.533 6.533 11 N -0.702 5.702 12 C 0.154 3.846 13 H 0.089 0.911 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.101 4.101 19 H 0.086 0.914 20 C 0.159 3.841 21 N -0.730 5.730 22 C -0.236 4.236 23 H 0.068 0.932 24 C -0.013 4.013 25 N -0.935 5.935 26 Si 0.904 3.096 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 16.497 -11.162 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.008 3.992 3 N -0.158 5.158 4 H 0.293 0.707 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.058 6.942 8 C -0.284 4.284 9 C 0.381 3.619 10 O -0.409 6.409 11 N -0.354 5.354 12 C 0.049 3.951 13 H 0.107 0.893 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.121 4.121 19 H 0.104 0.896 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.367 4.367 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.584 5.584 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.822 17.007 -11.914 24.404 hybrid contribution 0.606 -0.246 0.915 1.125 sum -12.216 16.760 -10.999 23.476 Atomic orbital electron populations 1.20632 0.85736 1.05039 1.04445 1.21390 0.94765 0.86023 0.96980 1.45838 1.03135 1.08580 1.58283 0.70680 1.77188 0.96323 1.10838 1.25880 1.22674 0.89255 0.90506 1.00812 1.98465 1.34812 1.64359 1.96576 1.19859 0.91169 0.94678 1.22659 1.17063 0.76602 0.84167 0.84039 1.90784 1.51253 1.67444 1.31432 1.46104 1.67746 1.13344 1.08182 1.21004 0.93936 0.81020 0.99128 0.89265 1.21903 0.95051 1.01279 0.98390 1.21488 0.99367 0.99499 0.94883 1.21583 0.96537 1.00914 0.96782 1.21531 0.93821 1.00102 0.99354 1.21626 0.97430 1.00052 0.92957 0.89619 1.20649 0.90090 0.95282 0.90797 1.42349 1.05489 1.62582 1.27057 1.19177 0.84158 1.27005 1.06370 0.91386 1.24697 0.97393 1.00809 0.98019 1.69641 1.31929 1.39435 1.17372 0.86303 0.85220 0.77464 0.77448 1.21329 1.21730 1.21309 0.88930 0.90024 0.88714 0.76220 0.91734 0.90969 0.92528 0.92362 0.91894 0.92359 0.92740 0.90285 0.96407 0.96268 0.78255 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.25 36.00 0.37 -0.15 16 2 C 0.14 1.25 7.29 -81.60 -0.60 0.66 16 3 N -0.45 -3.74 7.28 33.86 0.25 -3.49 16 4 H 0.45 1.91 8.96 -182.73 -1.64 0.28 16 5 N -0.28 -3.42 12.64 33.18 0.42 -3.00 16 6 C 0.16 2.18 7.89 -16.90 -0.13 2.05 16 7 Cl 0.03 0.43 29.19 -51.86 -1.51 -1.08 16 8 C -0.27 -3.36 5.88 -105.04 -0.62 -3.97 16 9 C 0.60 8.33 7.13 -12.54 -0.09 8.24 16 10 O -0.53 -9.10 16.77 5.27 0.09 -9.01 16 11 N -0.70 -8.92 3.61 -54.90 -0.20 -9.12 16 12 C 0.15 2.04 2.23 -67.93 -0.15 1.89 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 14 C -0.13 -1.41 5.60 -26.73 -0.15 -1.56 16 15 C -0.11 -1.12 5.77 -26.73 -0.15 -1.27 16 16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 17 C -0.11 -1.54 4.91 -26.73 -0.13 -1.67 16 18 C -0.10 -1.54 2.02 -90.62 -0.18 -1.72 16 19 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.16 3.15 5.42 -4.04 -0.02 3.13 16 21 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 22 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 26 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 33 H 0.40 4.85 6.65 -40.82 -0.27 4.57 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 7.60 -51.93 -0.39 0.14 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.73 6.50 -51.93 -0.34 0.39 16 41 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.39 7.61 -51.93 -0.40 -0.01 16 44 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -34.13 380.87 -9.95 -44.08 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.85 Total: 7.21 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.26 Total: -3.13 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.87 Total: -61.43 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.51 Total: -1.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.13 -9.95 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569162898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.869 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds