Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34233 * 126.28066 * 2 1 4 4 H 0.96998 * 125.73976 * 359.96612 * 3 2 1 5 5 N 1.39928 * 108.52427 * 179.97438 * 3 2 1 6 6 C 1.30538 * 108.89407 * 359.75307 * 5 3 2 7 7 Cl 1.73595 * 126.00502 * 180.26206 * 6 5 3 8 8 C 1.38071 * 126.28011 * 179.97438 * 2 1 3 9 9 C 1.47386 * 126.42324 * 359.96652 * 8 2 1 10 10 O 1.21609 * 119.99588 * 89.99847 * 9 8 2 11 11 N 1.34774 * 120.00079 * 269.99788 * 9 8 2 12 12 C 1.46496 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47054 * 34.99632 * 12 11 9 14 14 C 1.53005 * 109.46832 * 275.00231 * 12 11 9 15 15 C 1.52999 * 109.47159 * 299.99302 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.47294 * 154.99900 * 12 11 9 19 19 H 1.09002 * 109.46695 * 179.97438 * 18 12 11 20 20 C 1.52997 * 109.47232 * 299.99951 * 18 12 11 21 21 N 1.46501 * 109.46866 * 184.99942 * 20 18 12 22 22 C 1.36935 * 119.99654 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00358 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00100 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99683 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00126 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46737 * 59.99932 * 26 24 22 28 28 H 1.48495 * 109.46855 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47262 * 300.00004 * 26 24 22 30 30 H 1.09002 * 109.47205 * 270.00265 * 1 2 3 31 31 H 1.09003 * 109.47023 * 30.00038 * 1 2 3 32 32 H 1.08998 * 109.47442 * 149.99884 * 1 2 3 33 33 H 0.97001 * 119.99990 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47360 * 59.99916 * 14 12 11 35 35 H 1.09002 * 109.46935 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 38 38 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 39 39 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 41 41 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.47223 * 304.99821 * 20 18 12 43 43 H 1.09001 * 109.46547 * 65.00156 * 20 18 12 44 44 H 0.96998 * 120.00018 * 0.02562 * 21 20 18 45 45 H 0.96996 * 119.99982 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6339 0.6553 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6421 0.0157 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0018 10 8 1.7045 -3.1016 -1.0508 11 7 1.6860 -3.1627 1.1696 12 6 1.2510 -4.5616 1.1710 13 1 1.7057 -5.0843 0.3294 14 6 -0.2727 -4.6219 1.0457 15 6 -0.9110 -3.8883 2.2269 16 6 -0.4799 -4.5552 3.5347 17 6 1.0438 -4.4948 3.6599 18 6 1.6821 -5.2285 2.4787 19 1 1.3580 -6.2692 2.4798 20 6 3.2057 -5.1682 2.6039 21 7 3.6275 -5.9100 3.7947 22 6 4.9566 -5.9944 4.1137 23 1 5.6938 -5.5144 3.4872 24 6 5.3564 -6.6977 5.2417 25 7 4.4580 -7.2831 6.0049 26 14 7.1695 -6.8134 5.6764 27 1 7.7146 -5.4490 5.8923 28 1 7.3308 -7.6126 6.9175 29 1 7.9040 -7.4698 4.5653 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.8303 -2.6989 2.0092 34 1 -0.5798 -4.1468 0.1140 35 1 -0.5964 -5.6628 1.0462 36 1 -1.9964 -3.9309 2.1374 37 1 -0.5873 -2.8475 2.2259 38 1 -0.8036 -5.5961 3.5357 39 1 -0.9343 -4.0323 4.3762 40 1 1.3674 -3.4541 3.6589 41 1 1.3508 -4.9704 4.5914 42 1 3.6609 -5.6126 1.7188 43 1 3.5220 -4.1288 2.6923 44 1 2.9654 -6.3414 4.3572 45 1 4.7373 -7.7749 6.7929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569162898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = -0.495481 kcal Electronic energy + Delta-G solvation = -28236.136364 eV Core-core repulsion = 24314.488346 eV Total energy + Delta-G solvation = -3921.648018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64823 -41.12344 -39.08375 -37.95877 -36.42467 -34.62084 -33.75300 -33.66745 -32.49361 -31.19809 -30.60240 -28.43088 -26.90749 -24.65118 -24.31479 -23.07613 -23.03885 -21.97247 -21.12248 -19.95861 -19.32786 -18.94422 -17.65029 -16.96911 -16.71540 -16.37946 -16.31396 -16.13654 -15.84146 -15.37193 -15.18396 -15.02978 -14.86841 -14.60405 -14.17567 -14.04520 -13.97297 -13.37452 -13.31473 -13.05538 -13.00228 -12.93461 -12.83515 -12.81383 -12.68021 -12.56009 -12.13723 -11.90499 -11.88659 -11.81858 -11.36212 -11.14838 -11.04906 -10.96523 -10.81090 -10.56776 -9.95846 -9.89313 -8.96786 -7.94109 -5.21595 0.36751 0.45473 0.99037 1.46311 1.48588 1.51834 1.54779 1.87363 2.38453 2.56049 3.39058 3.48864 3.62553 3.75735 3.84793 3.89597 3.96241 4.11105 4.14514 4.30777 4.47135 4.53060 4.54588 4.64603 4.67305 4.67757 4.75135 4.78363 4.81685 4.98285 5.07164 5.09187 5.15908 5.25112 5.34434 5.36596 5.41813 5.49205 5.52009 5.58450 5.67121 5.98132 6.23861 6.28536 6.56469 7.23984 7.35633 8.11275 8.36539 9.28910 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.003940 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.537455 B = 7104.320801 C = 9016.017949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.170 3.830 3 N -0.427 5.427 4 H 0.466 0.534 5 N -0.298 5.298 6 C 0.144 3.856 7 Cl 0.008 6.992 8 C -0.303 4.303 9 C 0.605 3.395 10 O -0.569 6.569 11 N -0.694 5.694 12 C 0.160 3.840 13 H 0.067 0.933 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.088 4.088 19 H 0.079 0.921 20 C 0.162 3.838 21 N -0.738 5.738 22 C -0.245 4.245 23 H 0.067 0.933 24 C -0.069 4.069 25 N -0.965 5.965 26 Si 0.967 3.033 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.406 0.594 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.002 0.998 43 H 0.020 0.980 44 H 0.377 0.623 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 18.628 -11.318 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.124 5.124 6 C -0.048 4.048 7 Cl 0.035 6.965 8 C -0.319 4.319 9 C 0.390 3.610 10 O -0.448 6.448 11 N -0.345 5.345 12 C 0.055 3.945 13 H 0.085 0.915 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.108 4.108 19 H 0.097 0.903 20 C 0.035 3.965 21 N -0.381 5.381 22 C -0.377 4.377 23 H 0.085 0.915 24 C -0.261 4.261 25 N -0.616 5.616 26 Si 0.796 3.204 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.243 0.757 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.038 0.962 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.925 19.192 -12.081 27.148 hybrid contribution 1.224 -0.830 0.917 1.741 sum -13.701 18.362 -11.164 25.485 Atomic orbital electron populations 1.20863 0.82454 1.06261 1.06242 1.21894 0.96266 0.84716 0.93577 1.45851 1.01780 1.09641 1.56604 0.68298 1.77101 0.98606 1.10224 1.26510 1.22705 0.88969 0.90961 1.02199 1.98444 1.36165 1.65100 1.96759 1.19843 0.91372 0.94791 1.25889 1.17199 0.75664 0.84664 0.83467 1.90760 1.52979 1.68461 1.32635 1.46037 1.67304 1.12903 1.08265 1.20866 0.95836 0.81005 0.96767 0.91522 1.21845 0.92656 1.02039 0.99345 1.21453 1.00602 0.99513 0.92831 1.21535 0.93839 1.01380 0.98396 1.21448 0.96215 0.99735 0.96832 1.21463 0.94012 1.00374 0.94915 0.90292 1.20737 0.93426 0.94157 0.88181 1.42493 1.04448 1.62948 1.28247 1.19511 0.85574 1.26376 1.06234 0.91528 1.25445 1.01373 1.01085 0.98229 1.69784 1.33637 1.40408 1.17741 0.85317 0.80559 0.77554 0.76990 1.20556 1.21776 1.20796 0.86604 0.86744 0.89527 0.75666 0.91465 0.90482 0.90191 0.91273 0.92095 0.90896 0.91992 0.93544 0.98039 0.96217 0.79052 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.25 71.24 0.73 0.12 16 2 C 0.17 2.56 7.29 42.15 0.31 2.86 16 3 N -0.43 -5.99 7.28 -46.79 -0.34 -6.33 16 4 H 0.47 2.39 8.96 -213.43 -1.91 0.47 16 5 N -0.30 -7.06 12.64 -48.95 -0.62 -7.68 16 6 C 0.14 3.89 7.89 85.66 0.68 4.57 16 7 Cl 0.01 0.23 29.19 -2.72 -0.08 0.15 16 8 C -0.30 -7.30 5.88 -20.13 -0.12 -7.42 16 9 C 0.61 16.62 7.13 86.65 0.62 17.24 16 10 O -0.57 -19.57 16.77 -4.06 -0.07 -19.64 16 11 N -0.69 -17.21 3.61 -445.85 -1.61 -18.82 16 12 C 0.16 4.22 2.23 44.99 0.10 4.32 16 13 H 0.07 2.08 7.58 -2.39 -0.02 2.07 16 14 C -0.12 -2.43 5.60 30.60 0.17 -2.26 16 15 C -0.11 -1.72 5.77 30.59 0.18 -1.54 16 16 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 17 C -0.10 -2.86 4.91 30.60 0.15 -2.71 16 18 C -0.09 -2.71 2.02 -10.79 -0.02 -2.73 16 19 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 20 C 0.16 6.60 5.42 86.38 0.47 7.07 16 21 N -0.74 -37.72 5.33 -343.45 -1.83 -39.55 16 22 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 25 N -0.97 -58.98 13.06 21.65 0.28 -58.69 16 26 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 29 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 30 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.09 0.79 7.96 -2.39 -0.02 0.77 16 33 H 0.41 9.39 6.65 -92.71 -0.62 8.78 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.00 7.60 -2.39 -0.02 0.98 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.58 6.50 -2.39 -0.02 1.57 16 41 H 0.05 1.59 7.18 -2.39 -0.02 1.57 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.02 0.81 7.61 -2.39 -0.02 0.80 16 44 H 0.38 20.10 6.85 -92.71 -0.64 19.47 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.16 380.87 0.39 -75.77 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -2.12 Total: 25.05 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.75 Total: 0.71 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -4.12 Total: -131.08 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.07 Total: -19.64 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -0.08 Total: 0.15 kcal Total: -76.16 0.39 -75.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569162898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.272 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds