Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34229 * 126.28321 * 2 1 4 4 H 0.97000 * 125.74056 * 359.97438 * 3 2 1 5 5 N 1.39931 * 108.52482 * 180.23998 * 3 2 1 6 6 C 1.30530 * 108.89440 * 359.74500 * 5 3 2 7 7 Cl 1.73604 * 126.00775 * 179.97438 * 6 5 3 8 8 C 1.38073 * 126.27957 * 179.80837 * 2 1 3 9 9 C 1.47388 * 126.42291 * 0.03452 * 8 2 1 10 10 O 1.21603 * 119.99474 * 269.70758 * 9 8 2 11 11 N 1.34770 * 119.99832 * 89.70267 * 9 8 2 12 12 C 1.46508 * 119.99731 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46527 * 324.99795 * 12 11 9 14 14 C 1.52996 * 109.47348 * 84.99968 * 12 11 9 15 15 C 1.53001 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46923 * 300.00062 * 15 14 12 17 17 C 1.53003 * 109.46963 * 60.00343 * 16 15 14 18 18 C 1.53001 * 109.47020 * 299.99597 * 17 16 15 19 19 H 1.09008 * 109.46939 * 300.00621 * 18 17 16 20 20 C 1.52996 * 109.47238 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47059 * 64.99625 * 20 18 17 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.08998 * 109.47168 * 270.18689 * 1 2 3 31 31 H 1.09001 * 109.47074 * 30.18334 * 1 2 3 32 32 H 1.08999 * 109.47429 * 150.18550 * 1 2 3 33 33 H 0.96997 * 120.00930 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.46987 * 300.00250 * 14 12 11 35 35 H 1.09003 * 109.46613 * 60.00033 * 14 12 11 36 36 H 1.08994 * 109.47016 * 59.99904 * 15 14 12 37 37 H 1.09001 * 109.46786 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46534 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.47145 * 299.99763 * 16 15 14 40 40 H 1.09001 * 109.46736 * 179.97438 * 17 16 15 41 41 H 1.08995 * 109.47226 * 59.99434 * 17 16 15 42 42 H 1.09004 * 109.47066 * 304.99893 * 20 18 17 43 43 H 1.08994 * 109.46974 * 185.00040 * 20 18 17 44 44 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 45 45 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0020 2.0047 -0.0004 5 7 3.6340 0.6552 -0.0056 6 6 3.6599 -0.6498 -0.0034 7 17 5.0842 -1.6424 -0.0090 8 6 2.3240 -1.1131 0.0037 9 6 1.8858 -2.5203 0.0077 10 8 1.7097 -3.0992 1.0625 11 7 1.6802 -3.1653 -1.1576 12 6 1.2441 -4.5639 -1.1536 13 1 1.7023 -5.0849 -0.3129 14 6 -0.2790 -4.6229 -1.0213 15 6 -0.7344 -6.0835 -1.0165 16 6 -0.3097 -6.7544 -2.3244 17 6 1.2134 -6.6956 -2.4566 18 6 1.6688 -5.2349 -2.4614 19 1 1.2106 -4.7142 -3.3024 20 6 3.1919 -5.1760 -2.5943 21 7 3.5893 -5.7102 -3.8992 22 6 4.9131 -5.7533 -4.2470 23 1 5.6644 -5.3976 -3.5576 24 6 5.2892 -6.2542 -5.4858 25 7 4.3735 -6.6872 -6.3262 26 14 7.0950 -6.3136 -5.9600 27 1 7.9169 -5.7723 -4.8480 28 1 7.4904 -7.7197 -6.2282 29 1 7.3134 -5.4966 -7.1807 30 1 -0.3633 0.0034 1.0276 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3634 -0.8916 -0.5109 33 1 1.8210 -2.7037 -1.9990 34 1 -0.5815 -4.1453 -0.0894 35 1 -0.7371 -4.1018 -1.8620 36 1 -0.2763 -6.6041 -0.1756 37 1 -1.8196 -6.1254 -0.9227 38 1 -0.6338 -7.7951 -2.3207 39 1 -0.7679 -6.2338 -3.1653 40 1 1.5160 -7.1739 -3.3881 41 1 1.6715 -7.2162 -1.6157 42 1 3.6489 -5.7711 -1.8036 43 1 3.5243 -4.1415 -2.5086 44 1 2.9144 -6.0294 -4.5186 45 1 4.6363 -7.0375 -7.1917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569162899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -3.947466 kcal Electronic energy + Delta-G solvation = -27918.130218 eV Core-core repulsion = 23996.332511 eV Total energy + Delta-G solvation = -3921.797707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65051 -40.94640 -39.15320 -37.96636 -36.39674 -35.13893 -33.75720 -33.65351 -32.52084 -31.18347 -30.32597 -28.41487 -26.91412 -24.69976 -24.41507 -23.08433 -22.56503 -21.94871 -21.21474 -20.49091 -19.30985 -18.86003 -17.56103 -17.39563 -16.71069 -16.38170 -16.30941 -15.94732 -15.67516 -15.47064 -15.21102 -15.03512 -14.75255 -14.55801 -14.31745 -14.06000 -13.94138 -13.61331 -13.31489 -13.29466 -13.01538 -12.93306 -12.82979 -12.74948 -12.63071 -12.15611 -12.06092 -11.94445 -11.88188 -11.83392 -11.50327 -11.31781 -11.10770 -10.98966 -10.83231 -10.57777 -9.97873 -9.90367 -8.96467 -7.94492 -5.21685 0.35725 0.44336 0.97773 1.46043 1.46621 1.49114 1.56456 1.85930 2.34471 2.55653 3.39085 3.47416 3.59433 3.73338 3.82623 3.93340 3.98763 4.09619 4.15027 4.32444 4.43595 4.49764 4.54490 4.57671 4.62473 4.64952 4.68281 4.78763 4.90357 4.94347 5.07205 5.10841 5.18332 5.22436 5.30152 5.35246 5.36526 5.48366 5.50520 5.54694 5.65926 5.97066 6.22891 6.28594 6.54006 7.21249 7.35740 8.11005 8.36525 9.28898 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.004061 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.107855 B = 6893.766195 C = 9273.156580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.170 3.830 3 N -0.427 5.427 4 H 0.467 0.533 5 N -0.298 5.298 6 C 0.144 3.856 7 Cl 0.008 6.992 8 C -0.304 4.304 9 C 0.606 3.394 10 O -0.567 6.567 11 N -0.702 5.702 12 C 0.160 3.840 13 H 0.067 0.933 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.085 4.085 19 H 0.080 0.920 20 C 0.160 3.840 21 N -0.737 5.737 22 C -0.242 4.242 23 H 0.066 0.934 24 C -0.069 4.069 25 N -0.964 5.964 26 Si 0.965 3.035 27 H -0.272 1.272 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.003 0.997 43 H 0.020 0.980 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 15.180 13.302 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.124 5.124 6 C -0.048 4.048 7 Cl 0.036 6.964 8 C -0.320 4.320 9 C 0.391 3.609 10 O -0.446 6.446 11 N -0.351 5.351 12 C 0.056 3.944 13 H 0.085 0.915 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.143 4.143 18 C -0.104 4.104 19 H 0.099 0.901 20 C 0.033 3.967 21 N -0.381 5.381 22 C -0.374 4.374 23 H 0.084 0.916 24 C -0.261 4.261 25 N -0.615 5.615 26 Si 0.795 3.205 27 H -0.197 1.197 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.038 0.962 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.637 15.753 14.088 25.708 hybrid contribution 1.218 -0.577 -1.065 1.717 sum -13.419 15.176 13.023 24.083 Atomic orbital electron populations 1.20854 0.82452 1.06600 1.05856 1.21896 0.96270 0.84734 0.93575 1.45849 1.01781 1.09647 1.56593 0.68281 1.77097 0.98603 1.10229 1.26496 1.22700 0.88968 0.90962 1.02158 1.98444 1.36141 1.65082 1.96758 1.19845 0.91403 0.94774 1.25937 1.17188 0.75618 0.84645 0.83452 1.90756 1.52900 1.68601 1.32347 1.46059 1.67524 1.13073 1.08450 1.20923 0.95845 0.80521 0.97147 0.91528 1.21827 0.92975 0.97964 1.02676 1.21478 1.01666 0.94450 0.97273 1.21541 0.93850 1.01338 0.98365 1.21435 0.96973 0.94562 1.01352 1.21434 0.94442 0.97378 0.97149 0.90126 1.20757 0.93632 0.95584 0.86709 1.42493 1.04473 1.75353 1.15736 1.19572 0.85610 1.33284 0.98914 0.91559 1.25425 1.01209 1.02399 0.97088 1.69797 1.33097 1.49575 1.09069 0.85192 0.80666 0.76922 0.77726 1.19696 1.21921 1.21771 0.87627 0.86403 0.88928 0.75609 0.91515 0.90178 0.92422 0.89646 0.91156 0.91249 0.93207 0.92862 0.97947 0.96208 0.79015 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.25 71.24 0.73 0.06 16 2 C 0.17 2.66 7.29 42.15 0.31 2.96 16 3 N -0.43 -6.24 7.28 -46.79 -0.34 -6.58 16 4 H 0.47 2.63 8.96 -213.43 -1.91 0.72 16 5 N -0.30 -7.22 12.64 -48.95 -0.62 -7.84 16 6 C 0.14 3.98 7.89 85.66 0.68 4.66 16 7 Cl 0.01 0.24 29.19 -2.72 -0.08 0.16 16 8 C -0.30 -7.49 5.88 -20.13 -0.12 -7.60 16 9 C 0.61 16.93 7.13 86.65 0.62 17.55 16 10 O -0.57 -19.62 16.77 -4.04 -0.07 -19.69 16 11 N -0.70 -17.81 4.30 -445.84 -1.92 -19.73 16 12 C 0.16 4.25 1.90 44.99 0.09 4.33 16 13 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 14 C -0.12 -2.35 5.49 30.59 0.17 -2.18 16 15 C -0.11 -2.12 5.92 30.60 0.18 -1.94 16 16 C -0.11 -2.51 5.92 30.60 0.18 -2.33 16 17 C -0.10 -3.16 5.08 30.60 0.16 -3.01 16 18 C -0.08 -2.60 1.80 -10.79 -0.02 -2.62 16 19 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 20 C 0.16 6.52 5.57 86.38 0.48 7.00 16 21 N -0.74 -37.45 5.33 -343.46 -1.83 -39.28 16 22 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 23 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.96 -58.70 13.06 21.65 0.28 -58.42 16 26 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.09 0.74 7.96 -2.39 -0.02 0.72 16 33 H 0.41 9.59 8.38 -92.71 -0.78 8.81 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.79 7.18 -2.39 -0.02 1.78 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.02 0.82 7.31 -2.39 -0.02 0.80 16 44 H 0.38 19.97 6.85 -92.71 -0.64 19.33 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.94 384.99 -0.08 -76.02 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -2.28 Total: 25.91 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.75 Total: 0.44 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -4.43 Total: -131.85 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.07 Total: -19.69 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -75.94 -0.08 -76.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569162899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.070 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds