Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34234 * 126.28347 * 2 1 4 4 H 0.97004 * 125.73322 * 359.97438 * 3 2 1 5 5 N 1.39929 * 108.52900 * 180.24420 * 3 2 1 6 6 C 1.30534 * 108.88996 * 359.74643 * 5 3 2 7 7 Cl 1.73602 * 126.00353 * 180.02562 * 6 5 3 8 8 C 1.38070 * 126.28193 * 179.81680 * 2 1 3 9 9 C 1.47383 * 126.42447 * 0.02562 * 8 2 1 10 10 O 1.21609 * 119.99927 * 269.71700 * 9 8 2 11 11 N 1.34777 * 120.00180 * 89.70924 * 9 8 2 12 12 C 1.46500 * 120.00075 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47085 * 35.00197 * 12 11 9 14 14 C 1.53001 * 109.46826 * 274.99922 * 12 11 9 15 15 C 1.53002 * 109.46963 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47092 * 60.00194 * 15 14 12 17 17 C 1.53006 * 109.47445 * 300.00075 * 16 15 14 18 18 C 1.53000 * 109.47023 * 155.00453 * 12 11 9 19 19 H 1.09002 * 109.47398 * 59.99929 * 18 12 11 20 20 C 1.52997 * 109.47060 * 299.99760 * 18 12 11 21 21 N 1.46496 * 109.47484 * 175.00385 * 20 18 12 22 22 C 1.36937 * 120.00458 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99642 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00408 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99537 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00300 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47037 * 89.99485 * 26 24 22 28 28 H 1.48494 * 109.47202 * 209.99961 * 26 24 22 29 29 H 1.48501 * 109.47087 * 330.00051 * 26 24 22 30 30 H 1.08997 * 109.47627 * 270.18134 * 1 2 3 31 31 H 1.09003 * 109.47438 * 30.18494 * 1 2 3 32 32 H 1.09003 * 109.47020 * 150.18484 * 1 2 3 33 33 H 0.97006 * 119.99702 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47437 * 60.00616 * 14 12 11 35 35 H 1.09002 * 109.47508 * 300.00018 * 14 12 11 36 36 H 1.09002 * 109.47067 * 300.00341 * 15 14 12 37 37 H 1.09000 * 109.47312 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 39 39 H 1.09002 * 109.47497 * 59.99850 * 16 15 14 40 40 H 1.09002 * 109.46589 * 300.00331 * 17 16 15 41 41 H 1.08996 * 109.47165 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.47325 * 295.00173 * 20 18 12 43 43 H 1.09008 * 109.47017 * 55.00082 * 20 18 12 44 44 H 0.97005 * 119.99584 * 359.97438 * 21 20 18 45 45 H 0.97002 * 119.99299 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0047 -0.0004 5 7 3.6339 0.6554 -0.0057 6 6 3.6598 -0.6497 -0.0036 7 17 5.0842 -1.6422 -0.0081 8 6 2.3240 -1.1130 0.0036 9 6 1.8858 -2.5202 0.0075 10 8 1.7097 -3.0992 1.0623 11 7 1.6803 -3.1653 -1.1578 12 6 1.2442 -4.5639 -1.1538 13 1 0.5770 -4.7340 -0.3090 14 6 2.4649 -5.4783 -1.0320 15 6 2.0095 -6.9389 -1.0272 16 6 1.2698 -7.2468 -2.3306 17 6 0.0491 -6.3324 -2.4526 18 6 0.5050 -4.8713 -2.4576 19 1 1.1723 -4.7012 -3.3026 20 6 -0.7156 -3.9569 -2.5796 21 7 -1.3553 -4.1672 -3.8806 22 6 -2.4744 -3.4532 -4.2168 23 1 -2.8857 -2.7353 -3.5226 24 6 -3.0802 -3.6520 -5.4498 25 7 -2.5787 -4.5265 -6.2961 26 14 -4.6072 -2.6785 -5.9081 27 1 -4.2066 -1.4197 -6.5865 28 1 -5.4532 -3.4863 -6.8229 29 1 -5.3757 -2.3555 -4.6791 30 1 -0.3634 0.0033 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5110 33 1 1.8211 -2.7035 -1.9992 34 1 2.9916 -5.2594 -0.1031 35 1 3.1322 -5.3081 -1.8769 36 1 1.3424 -7.1088 -0.1820 37 1 2.8790 -7.5904 -0.9399 38 1 0.9449 -8.2873 -2.3270 39 1 1.9368 -7.0769 -3.1758 40 1 -0.6179 -6.5022 -1.6074 41 1 -0.4776 -6.5514 -3.3814 42 1 -1.4244 -4.1890 -1.7846 43 1 -0.4006 -2.9169 -2.4934 44 1 -0.9857 -4.8117 -4.5043 45 1 -3.0018 -4.6651 -7.1578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569162901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = 18.419172 kcal Electronic energy + Delta-G solvation = -27916.987425 eV Core-core repulsion = 23996.159608 eV Total energy + Delta-G solvation = -3920.827817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78060 -39.80606 -37.96078 -37.06309 -34.62059 -34.01616 -32.96136 -31.90869 -31.60226 -29.64583 -29.18928 -27.62466 -25.24105 -23.42913 -22.92937 -22.22174 -21.47891 -20.61085 -20.15815 -19.41758 -18.09754 -17.21406 -16.54867 -16.21720 -15.50774 -15.44148 -14.96476 -14.69455 -14.44538 -14.24843 -13.80974 -13.67527 -13.51276 -13.39234 -13.19800 -12.98948 -12.75282 -12.58473 -12.36561 -12.19812 -11.95629 -11.81064 -11.50546 -11.09290 -10.98566 -10.90408 -10.87983 -10.69898 -10.40553 -10.24093 -10.10337 -9.97014 -9.78744 -9.73136 -9.63297 -9.01867 -8.91842 -8.80499 -6.92932 -5.78757 -3.06829 1.19702 1.25784 1.92504 2.56391 2.62223 3.38273 3.40518 3.45902 3.47780 4.24053 4.54813 4.55780 4.74193 4.85398 4.89375 5.02898 5.12605 5.18039 5.29195 5.39890 5.44907 5.53581 5.57135 5.62034 5.67544 5.70134 5.73867 5.78778 5.93886 6.13726 6.19052 6.24038 6.29805 6.32466 6.42326 6.57996 6.60359 6.66649 6.70204 6.79230 6.92043 6.98117 7.61852 7.67121 8.30113 8.40395 9.51640 10.10150 10.44734 11.44131 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.003685 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.287738 B = 7597.219058 C = 9709.234400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 N -0.447 5.447 4 H 0.448 0.552 5 N -0.279 5.279 6 C 0.161 3.839 7 Cl 0.019 6.981 8 C -0.272 4.272 9 C 0.599 3.401 10 O -0.532 6.532 11 N -0.708 5.708 12 C 0.154 3.846 13 H 0.089 0.911 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.122 4.122 17 C -0.106 4.106 18 C -0.100 4.100 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.731 5.731 22 C -0.238 4.238 23 H 0.068 0.932 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.403 0.597 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 5.496 12.783 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.018 3.982 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.104 5.104 6 C -0.032 4.032 7 Cl 0.047 6.953 8 C -0.288 4.288 9 C 0.383 3.617 10 O -0.408 6.408 11 N -0.358 5.358 12 C 0.050 3.950 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.144 4.144 18 C -0.120 4.120 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.818 6.119 13.549 19.629 hybrid contribution -1.035 0.376 -1.001 1.488 sum 11.783 6.495 12.548 18.398 Atomic orbital electron populations 1.20694 0.85321 1.05584 1.04646 1.21494 0.95000 0.85865 0.95806 1.45844 1.02968 1.08728 1.58148 0.70519 1.77135 0.96659 1.10707 1.25914 1.22526 0.88677 0.90491 1.01517 1.98419 1.35323 1.64815 1.96751 1.19817 0.91047 0.94698 1.23192 1.17051 0.76640 0.84047 0.83991 1.90783 1.50977 1.67844 1.31190 1.46106 1.68021 1.13362 1.08319 1.21041 0.95444 0.79174 0.99359 0.89312 1.21899 0.97672 0.94859 1.02108 1.21484 0.99916 0.95524 0.98325 1.21600 0.97553 0.99379 0.97375 1.21498 0.96927 0.92754 1.03253 1.21607 0.97771 0.96619 0.95956 0.90668 1.20659 0.91383 0.95266 0.89528 1.42367 1.31703 1.48918 1.14514 1.19196 1.02575 1.15909 0.99237 0.91358 1.24714 0.99527 0.99696 0.96966 1.69656 1.42043 1.37533 1.08916 0.86226 0.82967 0.79243 0.77966 1.21820 1.21786 1.20810 0.88841 0.89708 0.88296 0.76221 0.91690 0.91838 0.91904 0.92206 0.92151 0.92037 0.92036 0.90280 0.96396 0.96451 0.78207 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.25 36.00 0.37 -0.46 16 2 C 0.15 1.53 7.29 -81.61 -0.60 0.93 16 3 N -0.45 -4.02 7.28 33.86 0.25 -3.77 16 4 H 0.45 2.31 8.96 -182.72 -1.64 0.67 16 5 N -0.28 -3.34 12.64 33.18 0.42 -2.92 16 6 C 0.16 2.04 7.89 -16.90 -0.13 1.91 16 7 Cl 0.02 0.22 29.19 -51.86 -1.51 -1.29 16 8 C -0.27 -3.46 5.88 -105.04 -0.62 -4.08 16 9 C 0.60 8.48 7.13 -12.54 -0.09 8.39 16 10 O -0.53 -9.18 16.77 5.27 0.09 -9.09 16 11 N -0.71 -9.19 4.30 -54.90 -0.24 -9.43 16 12 C 0.15 2.08 1.90 -67.93 -0.13 1.96 16 13 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 14 C -0.13 -1.55 5.49 -26.73 -0.15 -1.70 16 15 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 17 C -0.11 -1.57 5.08 -26.70 -0.14 -1.71 16 18 C -0.10 -1.51 1.80 -90.59 -0.16 -1.67 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 2.99 5.56 -4.05 -0.02 2.97 16 21 N -0.73 -17.48 5.33 -59.91 -0.32 -17.80 16 22 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.95 7.96 -51.93 -0.41 0.54 16 33 H 0.40 4.89 8.38 -40.82 -0.34 4.55 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.32 7.30 -51.92 -0.38 -0.06 16 44 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -32.82 384.99 -10.05 -42.87 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.01 Total: 9.11 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.23 Total: -3.56 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.83 Total: -60.64 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.51 Total: -1.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.82 -10.05 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569162901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.292 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds