Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50692 * 109.47058 * 2 1 4 4 N 1.30417 * 125.97787 * 270.19315 * 3 2 1 5 5 N 1.39923 * 108.96110 * 180.24436 * 4 3 2 6 6 C 1.46505 * 125.75236 * 179.75258 * 5 4 3 7 7 C 1.34352 * 108.50335 * 359.73867 * 5 4 3 8 8 Cl 1.73598 * 126.32134 * 180.02562 * 7 5 4 9 9 C 1.38283 * 107.35856 * 359.97438 * 7 5 4 10 10 C 1.47301 * 126.43259 * 179.97438 * 9 7 5 11 11 O 1.21617 * 119.99619 * 90.03103 * 10 9 7 12 12 N 1.34770 * 120.00084 * 270.02484 * 10 9 7 13 13 C 1.47423 * 125.65080 * 4.88842 * 12 10 9 14 14 C 1.54905 * 104.83258 * 204.16806 * 13 12 10 15 15 C 1.55156 * 101.58393 * 322.99090 * 14 13 12 16 16 C 1.47022 * 125.64548 * 184.93374 * 12 10 9 17 17 H 1.08998 * 110.00879 * 59.41360 * 16 12 10 18 18 C 1.52994 * 109.88763 * 298.31458 * 16 12 10 19 19 N 1.46494 * 109.47518 * 177.01550 * 18 16 12 20 20 C 1.36945 * 120.00393 * 174.91784 * 19 18 16 21 21 H 1.07996 * 119.99358 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99985 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00734 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47610 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.47077 * 300.00002 * 24 22 20 27 27 H 1.48499 * 109.47200 * 59.99540 * 24 22 20 28 28 H 1.08998 * 109.47137 * 300.00112 * 1 2 3 29 29 H 1.09002 * 109.46597 * 59.99819 * 1 2 3 30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47137 * 239.99888 * 2 1 3 32 32 H 1.09002 * 109.46440 * 119.99649 * 2 1 3 33 33 H 1.08991 * 109.47138 * 269.98189 * 6 5 4 34 34 H 1.09006 * 109.46503 * 29.97748 * 6 5 4 35 35 H 1.08998 * 109.46806 * 149.97372 * 6 5 4 36 36 H 1.09000 * 110.36566 * 85.33079 * 13 12 10 37 37 H 1.08995 * 110.45970 * 323.05607 * 13 12 10 38 38 H 1.09004 * 111.00481 * 204.91045 * 14 13 12 39 39 H 1.09003 * 111.03349 * 81.07983 * 14 13 12 40 40 H 1.09002 * 110.71473 * 277.13415 * 15 14 13 41 41 H 1.09003 * 110.71938 * 153.86140 * 15 14 13 42 42 H 1.09003 * 109.47057 * 57.01758 * 18 16 12 43 43 H 1.09000 * 109.47231 * 297.01883 * 18 16 12 44 44 H 0.97002 * 119.99937 * 354.92365 * 19 18 16 45 45 H 0.97009 * 119.99360 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2844 2.1443 -1.0554 5 7 2.7370 3.4034 -0.6459 6 6 3.1295 4.5018 -1.5323 7 6 2.7507 3.4355 0.6971 8 17 3.2329 4.7764 1.6887 9 6 2.3087 2.2038 1.1438 10 6 2.1606 1.7840 2.5480 11 8 1.1082 1.9667 3.1295 12 7 3.1913 1.1975 3.1883 13 6 4.5470 1.0080 2.6409 14 6 5.1284 -0.1925 3.4285 15 6 4.5456 0.0528 4.8454 16 6 3.1497 0.6399 4.5480 17 1 2.3969 -0.1462 4.6058 18 6 2.8253 1.7458 5.5543 19 7 2.7158 1.1684 6.8962 20 6 2.5329 1.9849 7.9802 21 1 2.4690 3.0545 7.8458 22 6 2.4297 1.4377 9.2517 23 7 2.5081 0.1341 9.4156 24 14 2.1794 2.5515 10.7303 25 1 2.1018 1.7275 11.9633 26 1 3.3207 3.4956 10.8376 27 1 0.9176 3.3169 10.5656 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.1941 4.4273 -1.7537 34 1 2.5604 4.4410 -2.4600 35 1 2.9258 5.4542 -1.0428 36 1 5.1515 1.8996 2.8076 37 1 4.4993 0.7764 1.5769 38 1 6.2178 -0.1596 3.4430 39 1 4.7737 -1.1381 3.0185 40 1 5.1563 0.7692 5.3948 41 1 4.4605 -0.8847 5.3950 42 1 1.8807 2.2177 5.2837 43 1 3.6202 2.4915 5.5434 44 1 2.7730 0.2076 7.0169 45 1 2.6377 -0.4443 8.6477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569561330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 50.481165 kcal Electronic energy + Delta-G solvation = -28144.365560 eV Core-core repulsion = 24224.928055 eV Total energy + Delta-G solvation = -3919.437504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79591 -39.75440 -37.29286 -37.25523 -35.08756 -34.69747 -32.29275 -31.72316 -31.28378 -30.22580 -28.48695 -27.27737 -24.93687 -24.19812 -23.35211 -22.35161 -21.87053 -20.86877 -20.12303 -19.03109 -17.74977 -17.12878 -16.63169 -16.30944 -16.09864 -15.53842 -14.98325 -14.63288 -14.24623 -14.04793 -13.68216 -13.65904 -13.65093 -13.37699 -13.34144 -13.17777 -12.96633 -12.84618 -12.50833 -12.17326 -12.04192 -11.96398 -11.76080 -11.56638 -11.41705 -11.16977 -10.88630 -10.75844 -10.58225 -10.52186 -10.42228 -9.93891 -9.77601 -9.60096 -9.13680 -8.89383 -8.76292 -8.43283 -6.89541 -6.01814 -3.00134 1.00788 1.13442 2.03422 2.15374 2.64625 3.14261 3.57508 3.61948 3.78823 3.93759 4.39439 4.57560 4.61454 4.65966 4.71023 4.76672 4.92763 4.94155 5.05775 5.07776 5.11373 5.20470 5.33162 5.38330 5.45245 5.58918 5.68853 5.70429 5.79176 5.81530 5.90613 5.94247 5.99061 6.06166 6.11532 6.14666 6.21142 6.38724 6.52870 6.81797 7.03907 7.12889 7.66073 7.90618 8.32390 8.84550 9.32302 10.18339 10.33727 11.47128 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003201 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.714739 B = 8743.823646 C = 9336.693650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.123 3.877 4 N -0.272 5.272 5 N -0.355 5.355 6 C 0.093 3.907 7 C 0.154 3.846 8 Cl 0.016 6.984 9 C -0.243 4.243 10 C 0.607 3.393 11 O -0.513 6.513 12 N -0.601 5.601 13 C 0.104 3.896 14 C -0.133 4.133 15 C -0.120 4.120 16 C 0.131 3.869 17 H 0.076 0.924 18 C 0.151 3.849 19 N -0.740 5.740 20 C -0.324 4.324 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.946 5.946 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.296 1.296 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.021 0.979 44 H 0.366 0.634 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.631 3.509 -26.357 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.043 4.043 4 N -0.095 5.095 5 N -0.137 5.137 6 C -0.047 4.047 7 C -0.002 4.002 8 Cl 0.044 6.956 9 C -0.259 4.259 10 C 0.393 3.607 11 O -0.388 6.388 12 N -0.336 5.336 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.158 4.158 16 C 0.028 3.972 17 H 0.094 0.906 18 C 0.023 3.977 19 N -0.386 5.386 20 C -0.455 4.455 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.593 5.593 24 Si 0.911 3.089 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.223 1.223 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.881 4.239 -25.735 26.535 hybrid contribution 0.404 0.220 -0.856 0.972 sum 5.285 4.460 -26.591 27.476 Atomic orbital electron populations 1.21730 0.93389 1.02514 1.02937 1.20078 0.97010 0.87525 1.03892 1.22289 0.96777 0.97027 0.88224 1.77247 1.21280 0.89450 1.21485 1.48341 1.50438 1.12353 1.02615 1.22061 1.02080 0.86043 0.94537 1.21959 1.02341 0.91769 0.84149 1.98458 1.89518 1.42277 1.65337 1.19780 1.17128 0.93805 0.95193 1.16683 0.82850 0.77383 0.83780 1.90858 1.27291 1.53721 1.66899 1.48398 1.10587 1.58655 1.15915 1.22254 0.83184 0.98507 0.98006 1.22791 1.00683 0.97631 0.96021 1.22668 0.94965 1.02106 0.96091 1.21843 0.97864 0.96567 0.80948 0.90636 1.20914 0.98852 0.93366 0.84596 1.42209 1.89340 1.05659 1.01364 1.20014 1.46650 0.91001 0.87817 0.91922 1.25733 1.00809 0.98934 0.98907 1.70885 1.53380 1.02667 1.32329 0.83243 0.75832 0.73966 0.75871 1.21061 1.22377 1.22303 0.91577 0.92398 0.91498 0.89623 0.89558 0.89774 0.88275 0.89025 0.91537 0.91103 0.89989 0.90707 0.89873 0.89931 0.94575 0.96116 0.80114 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.90 37.16 0.37 -1.13 16 2 C -0.05 -0.47 6.33 -27.88 -0.18 -0.64 16 3 C 0.12 1.53 6.52 -82.02 -0.53 1.00 16 4 N -0.27 -3.26 12.49 33.90 0.42 -2.84 16 5 N -0.36 -3.79 3.98 -64.32 -0.26 -4.04 16 6 C 0.09 0.55 11.28 59.85 0.68 1.22 16 7 C 0.15 1.93 7.54 -16.43 -0.12 1.81 16 8 Cl 0.02 0.19 28.56 -51.86 -1.48 -1.29 16 9 C -0.24 -3.44 4.74 -105.02 -0.50 -3.94 16 10 C 0.61 10.30 7.05 -12.58 -0.09 10.21 16 11 O -0.51 -10.91 15.92 5.26 0.08 -10.82 16 12 N -0.60 -9.29 3.06 -164.33 -0.50 -9.80 16 13 C 0.10 1.22 6.72 -2.53 -0.02 1.20 16 14 C -0.13 -1.43 7.08 -24.59 -0.17 -1.60 16 15 C -0.12 -1.76 6.13 -24.90 -0.15 -1.92 16 16 C 0.13 2.31 2.97 -66.95 -0.20 2.11 16 17 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 18 C 0.15 3.41 5.63 -4.05 -0.02 3.39 16 19 N -0.74 -19.60 5.38 -59.92 -0.32 -19.92 16 20 C -0.32 -9.60 9.99 -15.06 -0.15 -9.75 16 21 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 23 N -0.95 -29.89 13.70 55.49 0.76 -29.13 16 24 Si 1.08 26.86 29.92 -169.99 -5.09 21.77 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.89 8.01 -51.93 -0.42 0.47 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.43 7.77 -51.93 -0.40 0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.73 7.61 -51.93 -0.40 0.34 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.34 7.80 -51.93 -0.41 0.93 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.92 6.61 -51.93 -0.34 0.58 16 43 H 0.02 0.48 8.07 -51.93 -0.42 0.06 16 44 H 0.37 9.67 6.38 -40.82 -0.26 9.41 16 45 H 0.25 7.85 6.78 -40.82 -0.28 7.57 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -36.82 388.13 -8.50 -45.32 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.78 Total: 4.45 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.19 Total: 0.46 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.10 Total: -65.73 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -5.09 Total: 21.77 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.48 Total: -1.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.82 -8.50 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569561330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.799 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds