Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34240 * 126.28154 * 2 1 4 4 H 0.96998 * 125.73826 * 0.02562 * 3 2 1 5 5 N 1.39936 * 108.52158 * 179.97438 * 3 2 1 6 6 C 1.30531 * 108.89773 * 0.02562 * 5 3 2 7 7 Cl 1.73593 * 126.00567 * 179.97438 * 6 5 3 8 8 C 1.38074 * 126.28422 * 180.27484 * 2 1 3 9 9 C 1.47383 * 126.41897 * 359.97438 * 8 2 1 10 10 O 1.21616 * 120.00051 * 270.19277 * 9 8 2 11 11 N 1.34776 * 120.00166 * 90.19059 * 9 8 2 12 12 C 1.46500 * 120.00042 * 174.69003 * 11 9 8 13 13 C 1.52994 * 109.47544 * 303.95133 * 12 11 9 14 14 N 1.46502 * 109.47008 * 305.30635 * 13 12 11 15 15 C 1.36939 * 120.00014 * 175.10100 * 14 13 12 16 16 H 1.08003 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99838 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00220 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47367 * 60.00235 * 19 17 15 21 21 H 1.48499 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47133 * 300.00383 * 19 17 15 23 23 C 1.52997 * 109.46984 * 183.94858 * 12 11 9 24 24 C 1.53001 * 109.47438 * 300.00358 * 23 12 11 25 25 C 1.53004 * 109.46968 * 299.99726 * 24 23 12 26 26 C 1.52997 * 109.46817 * 59.99894 * 25 24 23 27 27 C 1.52995 * 109.47507 * 300.00149 * 26 25 24 28 28 H 1.08997 * 109.47008 * 89.97188 * 1 2 3 29 29 H 1.08995 * 109.47008 * 209.97297 * 1 2 3 30 30 H 1.09000 * 109.46678 * 329.97381 * 1 2 3 31 31 H 0.96999 * 119.99994 * 354.69399 * 11 9 8 32 32 H 1.09006 * 109.47224 * 65.30255 * 13 12 11 33 33 H 1.08999 * 109.47598 * 185.30403 * 13 12 11 34 34 H 0.97002 * 119.99974 * 355.09863 * 14 13 12 35 35 H 0.97001 * 120.00145 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.47188 * 60.00485 * 23 12 11 37 37 H 1.09003 * 109.46969 * 180.02562 * 23 12 11 38 38 H 1.09005 * 109.47108 * 180.02562 * 24 23 12 39 39 H 1.08994 * 109.47209 * 59.99727 * 24 23 12 40 40 H 1.08994 * 109.47157 * 300.00033 * 25 24 23 41 41 H 1.08998 * 109.47190 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.47188 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.47372 * 59.99854 * 26 25 24 44 44 H 1.09003 * 109.47021 * 299.99986 * 27 26 25 45 45 H 1.09004 * 109.47469 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6553 0.0006 6 6 3.6599 -0.6498 0.0004 7 17 5.0842 -1.6422 0.0003 8 6 2.3241 -1.1130 -0.0053 9 6 1.8859 -2.5202 -0.0116 10 8 1.7021 -3.1045 1.0391 11 7 1.6888 -3.1595 -1.1816 12 6 1.3667 -4.5886 -1.1902 13 6 2.4545 -5.3611 -0.4415 14 7 3.7629 -5.0479 -1.0213 15 6 4.9026 -5.5465 -0.4489 16 1 4.8370 -6.1703 0.4303 17 6 6.1423 -5.2501 -0.9987 18 7 6.2223 -4.4894 -2.0698 19 14 7.6970 -5.9307 -0.2182 20 1 7.6463 -7.4149 -0.2269 21 1 8.8800 -5.4709 -0.9890 22 1 7.8005 -5.4472 1.1820 23 6 1.2911 -5.0855 -2.6353 24 6 0.2033 -4.3130 -3.3841 25 6 -1.1455 -4.5361 -2.6969 26 6 -1.0698 -4.0391 -1.2518 27 6 0.0180 -4.8116 -0.5031 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.7602 -2.6733 -2.0179 32 1 2.4452 -5.0746 0.6102 33 1 2.2654 -6.4311 -0.5282 34 1 3.8219 -4.4873 -1.8108 35 1 7.0887 -4.2820 -2.4537 36 1 2.2519 -4.9267 -3.1249 37 1 1.0510 -6.1488 -2.6417 38 1 0.1491 -4.6674 -4.4135 39 1 0.4429 -3.2497 -3.3776 40 1 -1.3851 -5.5993 -2.7033 41 1 -1.9204 -3.9853 -3.2300 42 1 -2.0308 -4.1976 -0.7623 43 1 -0.8301 -2.9757 -1.2453 44 1 -0.2216 -5.8749 -0.5095 45 1 0.0716 -4.4578 0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570797065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = 32.638269 kcal Electronic energy + Delta-G solvation = -29457.185041 eV Core-core repulsion = 25536.973811 eV Total energy + Delta-G solvation = -3920.211230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.38285 -39.98399 -37.36015 -36.14753 -34.52044 -33.05159 -32.65391 -31.57961 -30.67890 -30.54038 -29.09499 -27.39802 -25.16140 -22.99779 -22.85268 -22.10274 -21.68886 -20.48050 -19.77293 -18.64869 -17.84209 -17.01693 -16.38335 -15.59949 -15.08282 -14.95481 -14.85104 -14.51368 -14.23466 -13.96578 -13.76537 -13.42050 -13.21770 -13.14131 -13.09167 -12.76611 -12.47389 -12.18052 -12.07635 -11.91518 -11.59714 -11.43521 -11.29779 -11.18929 -10.90783 -10.76935 -10.69617 -10.47703 -10.24330 -10.11991 -9.99912 -9.82629 -9.51071 -9.20812 -9.15632 -8.66977 -8.58393 -8.38121 -6.68749 -5.58988 -2.83869 1.59480 1.94663 2.41703 3.01785 3.13652 3.52725 3.57253 3.59213 3.79208 4.47680 4.72516 4.77513 4.89267 4.94023 4.97645 5.10788 5.18724 5.36157 5.40607 5.45091 5.57537 5.64694 5.69963 5.70699 5.75234 5.77965 5.83592 5.91965 6.08755 6.16130 6.19245 6.31232 6.37580 6.40822 6.49401 6.57180 6.71385 6.77012 7.02105 7.04944 7.25696 7.40818 7.87384 8.07584 8.59089 8.80006 9.71498 10.30077 10.66865 11.62777 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009115 B = 0.006253 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.004713 B = 4477.105182 C = 6758.190947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.126 3.874 3 N -0.457 5.457 4 H 0.443 0.557 5 N -0.288 5.288 6 C 0.155 3.845 7 Cl 0.069 6.931 8 C -0.262 4.262 9 C 0.610 3.390 10 O -0.525 6.525 11 N -0.698 5.698 12 C 0.178 3.822 13 C 0.139 3.861 14 N -0.719 5.719 15 C -0.221 4.221 16 H 0.064 0.936 17 C -0.010 4.010 18 N -0.928 5.928 19 Si 0.889 3.111 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.289 1.289 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.128 4.128 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.382 0.618 35 H 0.250 0.750 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.505 9.649 -1.377 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.006 4.006 3 N -0.165 5.165 4 H 0.288 0.712 5 N -0.113 5.113 6 C -0.038 4.038 7 Cl 0.097 6.903 8 C -0.277 4.277 9 C 0.394 3.606 10 O -0.401 6.401 11 N -0.348 5.348 12 C 0.092 3.908 13 C 0.011 3.989 14 N -0.363 5.363 15 C -0.353 4.353 16 H 0.082 0.918 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.721 3.279 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.216 1.216 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.167 4.167 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.228 0.772 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.644 10.038 -0.510 19.443 hybrid contribution 0.770 -0.184 -0.257 0.832 sum -15.874 9.854 -0.767 18.700 Atomic orbital electron populations 1.20565 0.86232 1.04716 1.03964 1.21335 0.94478 0.86382 0.98363 1.45811 1.03489 1.08227 1.59013 0.71234 1.77194 0.95880 1.11350 1.26915 1.23190 0.91101 0.90470 0.99026 1.98595 1.33267 1.62335 1.96081 1.19975 0.91417 0.94678 1.21678 1.16844 0.76022 0.83830 0.83892 1.90713 1.50483 1.67062 1.31852 1.45852 1.71148 1.09920 1.07925 1.20556 0.94505 0.80058 0.95659 1.21092 0.85434 0.95093 0.97308 1.42149 0.99581 1.60946 1.33654 1.19088 0.84886 1.23547 1.07743 0.91836 1.24531 0.96745 1.00969 0.98287 1.69629 1.23164 1.41816 1.23131 0.86526 0.84118 0.78658 0.78556 1.21528 1.21914 1.21580 1.21780 0.99597 1.00260 0.94076 1.21554 0.94954 1.00285 0.98876 1.21543 0.96965 1.01048 0.95967 1.21456 0.98248 1.00098 0.95212 1.21909 0.93467 1.00335 1.00963 0.89405 0.88928 0.90385 0.77160 0.93394 0.96531 0.78331 0.93959 0.90171 0.90661 0.92107 0.92350 0.92149 0.92716 0.92658 0.92289 0.91567 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.25 36.00 0.37 -0.36 16 2 C 0.13 1.52 7.29 -81.60 -0.60 0.93 16 3 N -0.46 -5.28 7.28 33.86 0.25 -5.04 16 4 H 0.44 3.19 8.96 -182.72 -1.64 1.55 16 5 N -0.29 -4.69 12.64 33.17 0.42 -4.27 16 6 C 0.15 2.85 7.89 -16.91 -0.13 2.72 16 7 Cl 0.07 1.49 29.19 -51.86 -1.51 -0.03 16 8 C -0.26 -4.31 5.88 -105.04 -0.62 -4.93 16 9 C 0.61 10.77 6.58 -12.54 -0.08 10.69 16 10 O -0.53 -10.91 13.40 5.26 0.07 -10.84 16 11 N -0.70 -10.91 3.58 -48.69 -0.17 -11.09 16 12 C 0.18 2.82 0.32 -131.82 -0.04 2.77 16 13 C 0.14 2.89 4.79 -4.04 -0.02 2.87 16 14 N -0.72 -17.50 5.19 -59.91 -0.31 -17.82 16 15 C -0.22 -6.12 9.99 -15.06 -0.15 -6.27 16 16 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 19 Si 0.89 22.85 29.55 -169.99 -5.02 17.83 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 23 C -0.12 -1.70 4.67 -26.73 -0.12 -1.82 16 24 C -0.12 -1.31 5.75 -26.73 -0.15 -1.47 16 25 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 26 C -0.11 -1.22 5.76 -26.73 -0.15 -1.38 16 27 C -0.13 -1.77 4.58 -26.73 -0.12 -1.89 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.39 5.64 7.18 -40.82 -0.29 5.35 16 32 H 0.05 1.13 6.24 -51.93 -0.32 0.80 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.38 9.60 6.46 -40.82 -0.26 9.34 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.34 7.10 -51.93 -0.37 0.97 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.33 6.28 -51.93 -0.33 1.00 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -33.17 374.39 -9.73 -42.89 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.73 Total: 8.60 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.08 Total: 0.16 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.91 Total: -64.25 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 17 Polarization: 1.49 SS G_CDS: -1.51 Total: -0.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.17 -9.73 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570797065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.530 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds