Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34240 * 126.28154 * 2 1 4 4 H 0.96998 * 125.73826 * 0.02562 * 3 2 1 5 5 N 1.39936 * 108.52158 * 179.97438 * 3 2 1 6 6 C 1.30531 * 108.89773 * 0.02562 * 5 3 2 7 7 Cl 1.73593 * 126.00567 * 179.97438 * 6 5 3 8 8 C 1.38074 * 126.28422 * 180.27484 * 2 1 3 9 9 C 1.47383 * 126.41897 * 359.97438 * 8 2 1 10 10 O 1.21616 * 120.00051 * 270.19277 * 9 8 2 11 11 N 1.34776 * 120.00166 * 90.19059 * 9 8 2 12 12 C 1.46500 * 120.00042 * 174.69003 * 11 9 8 13 13 C 1.52994 * 109.47544 * 303.95133 * 12 11 9 14 14 N 1.46502 * 109.47008 * 305.30635 * 13 12 11 15 15 C 1.36939 * 120.00014 * 175.10100 * 14 13 12 16 16 H 1.08003 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99838 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00220 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47367 * 60.00235 * 19 17 15 21 21 H 1.48499 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47133 * 300.00383 * 19 17 15 23 23 C 1.52997 * 109.46984 * 183.94858 * 12 11 9 24 24 C 1.53001 * 109.47438 * 300.00358 * 23 12 11 25 25 C 1.53004 * 109.46968 * 299.99726 * 24 23 12 26 26 C 1.52997 * 109.46817 * 59.99894 * 25 24 23 27 27 C 1.52995 * 109.47507 * 300.00149 * 26 25 24 28 28 H 1.08997 * 109.47008 * 89.97188 * 1 2 3 29 29 H 1.08995 * 109.47008 * 209.97297 * 1 2 3 30 30 H 1.09000 * 109.46678 * 329.97381 * 1 2 3 31 31 H 0.96999 * 119.99994 * 354.69399 * 11 9 8 32 32 H 1.09006 * 109.47224 * 65.30255 * 13 12 11 33 33 H 1.08999 * 109.47598 * 185.30403 * 13 12 11 34 34 H 0.97002 * 119.99974 * 355.09863 * 14 13 12 35 35 H 0.97001 * 120.00145 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.47188 * 60.00485 * 23 12 11 37 37 H 1.09003 * 109.46969 * 180.02562 * 23 12 11 38 38 H 1.09005 * 109.47108 * 180.02562 * 24 23 12 39 39 H 1.08994 * 109.47209 * 59.99727 * 24 23 12 40 40 H 1.08994 * 109.47157 * 300.00033 * 25 24 23 41 41 H 1.08998 * 109.47190 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.47188 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.47372 * 59.99854 * 26 25 24 44 44 H 1.09003 * 109.47021 * 299.99986 * 27 26 25 45 45 H 1.09004 * 109.47469 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6553 0.0006 6 6 3.6599 -0.6498 0.0004 7 17 5.0842 -1.6422 0.0003 8 6 2.3241 -1.1130 -0.0053 9 6 1.8859 -2.5202 -0.0116 10 8 1.7021 -3.1045 1.0391 11 7 1.6888 -3.1595 -1.1816 12 6 1.3667 -4.5886 -1.1902 13 6 2.4545 -5.3611 -0.4415 14 7 3.7629 -5.0479 -1.0213 15 6 4.9026 -5.5465 -0.4489 16 1 4.8370 -6.1703 0.4303 17 6 6.1423 -5.2501 -0.9987 18 7 6.2223 -4.4894 -2.0698 19 14 7.6970 -5.9307 -0.2182 20 1 7.6463 -7.4149 -0.2269 21 1 8.8800 -5.4709 -0.9890 22 1 7.8005 -5.4472 1.1820 23 6 1.2911 -5.0855 -2.6353 24 6 0.2033 -4.3130 -3.3841 25 6 -1.1455 -4.5361 -2.6969 26 6 -1.0698 -4.0391 -1.2518 27 6 0.0180 -4.8116 -0.5031 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.7602 -2.6733 -2.0179 32 1 2.4452 -5.0746 0.6102 33 1 2.2654 -6.4311 -0.5282 34 1 3.8219 -4.4873 -1.8108 35 1 7.0887 -4.2820 -2.4537 36 1 2.2519 -4.9267 -3.1249 37 1 1.0510 -6.1488 -2.6417 38 1 0.1491 -4.6674 -4.4135 39 1 0.4429 -3.2497 -3.3776 40 1 -1.3851 -5.5993 -2.7033 41 1 -1.9204 -3.9853 -3.2300 42 1 -2.0308 -4.1976 -0.7623 43 1 -0.8301 -2.9757 -1.2453 44 1 -0.2216 -5.8749 -0.5095 45 1 0.0716 -4.4578 0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570797065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = 9.648314 kcal Electronic energy + Delta-G solvation = -29458.181960 eV Core-core repulsion = 25536.973811 eV Total energy + Delta-G solvation = -3921.208150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55229 -41.25281 -38.63199 -37.64481 -36.24771 -34.51120 -33.67280 -33.14615 -32.10418 -31.60536 -30.52434 -28.33676 -26.89220 -24.57445 -24.13089 -23.30876 -22.90598 -21.71476 -20.91665 -19.91875 -19.06926 -18.97044 -17.53856 -16.87456 -16.53037 -16.27566 -16.15225 -15.94271 -15.68418 -15.18975 -15.05934 -14.84268 -14.55918 -14.44973 -14.09801 -13.94051 -13.68566 -13.32059 -13.27035 -13.07699 -12.95225 -12.81340 -12.77567 -12.69042 -12.57907 -12.47207 -12.07865 -11.90713 -11.76077 -11.67032 -11.36327 -11.08446 -11.02288 -10.85375 -10.43359 -10.40345 -9.78813 -9.74300 -8.76344 -7.79288 -5.02176 0.52736 0.64363 1.11037 1.44212 1.45960 1.50456 1.71358 2.03251 2.52183 2.62380 3.51815 3.58714 3.75338 3.85285 3.93945 3.96939 4.06134 4.21325 4.28140 4.35853 4.57918 4.61971 4.69421 4.70000 4.71797 4.78671 4.83222 4.90711 4.95715 5.01277 5.10690 5.22562 5.27764 5.30001 5.35469 5.41371 5.47967 5.57526 5.61354 5.63284 5.85547 6.07664 6.33117 6.40208 6.78093 7.47390 7.50408 8.25275 8.55420 9.41126 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009115 B = 0.006253 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.004713 B = 4477.105182 C = 6758.190947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.163 3.837 3 N -0.429 5.429 4 H 0.465 0.535 5 N -0.307 5.307 6 C 0.134 3.866 7 Cl 0.024 6.976 8 C -0.302 4.302 9 C 0.613 3.387 10 O -0.564 6.564 11 N -0.687 5.687 12 C 0.185 3.815 13 C 0.139 3.861 14 N -0.718 5.718 15 C -0.228 4.228 16 H 0.052 0.948 17 C -0.048 4.048 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.293 1.293 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.106 4.106 27 C -0.122 4.122 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.402 0.598 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.378 0.622 35 H 0.245 0.755 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.773 11.244 -2.457 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.029 3.971 3 N -0.141 5.141 4 H 0.315 0.685 5 N -0.134 5.134 6 C -0.057 4.057 7 Cl 0.052 6.948 8 C -0.317 4.317 9 C 0.398 3.602 10 O -0.443 6.443 11 N -0.337 5.337 12 C 0.099 3.901 13 C 0.011 3.989 14 N -0.361 5.361 15 C -0.361 4.361 16 H 0.070 0.930 17 C -0.242 4.242 18 N -0.592 5.592 19 Si 0.767 3.233 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.161 4.161 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.238 0.762 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.212 0.788 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.929 11.658 -1.608 23.145 hybrid contribution 1.702 -0.609 0.136 1.813 sum -18.227 11.050 -1.472 21.366 Atomic orbital electron populations 1.20834 0.82247 1.06080 1.06232 1.21916 0.96268 0.84685 0.94261 1.45805 1.01865 1.09470 1.56972 0.68506 1.77083 0.98584 1.10321 1.27363 1.23072 0.90311 0.91041 1.01316 1.98563 1.35859 1.63855 1.96487 1.20003 0.91338 0.95240 1.25140 1.17034 0.75200 0.84334 0.83587 1.90693 1.52284 1.68116 1.33212 1.45774 1.70358 1.09669 1.07894 1.20458 0.93750 0.79564 0.96359 1.21152 0.85722 0.95682 0.96355 1.42133 1.00114 1.60484 1.33324 1.19240 0.86289 1.23201 1.07323 0.92961 1.24988 0.98576 1.01689 0.98941 1.69737 1.23010 1.42629 1.23867 0.85786 0.81626 0.78350 0.77522 1.20870 1.22007 1.22016 1.21705 0.99666 1.00931 0.92848 1.21528 0.94297 1.00062 0.99124 1.21519 0.96638 1.01673 0.95089 1.21429 0.97533 0.99750 0.95613 1.21833 0.93220 1.01174 0.99867 0.86424 0.89774 0.86762 0.76226 0.96334 0.96831 0.78800 0.94591 0.93045 0.90595 0.90772 0.91642 0.91865 0.90157 0.90916 0.91801 0.91145 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.25 71.23 0.73 -0.29 16 2 C 0.16 3.48 7.29 42.15 0.31 3.78 16 3 N -0.43 -8.76 7.28 -46.79 -0.34 -9.10 16 4 H 0.46 4.90 8.96 -213.43 -1.91 2.99 16 5 N -0.31 -9.80 12.64 -48.96 -0.62 -10.42 16 6 C 0.13 5.02 7.89 85.66 0.68 5.69 16 7 Cl 0.02 1.10 29.19 -2.72 -0.08 1.02 16 8 C -0.30 -9.80 5.88 -20.13 -0.12 -9.92 16 9 C 0.61 21.87 6.58 86.65 0.57 22.44 16 10 O -0.56 -24.24 13.40 -4.08 -0.05 -24.30 16 11 N -0.69 -21.41 3.58 -426.20 -1.53 -22.93 16 12 C 0.18 5.87 0.32 3.60 0.00 5.87 16 13 C 0.14 6.02 4.79 86.38 0.41 6.43 16 14 N -0.72 -36.32 5.19 -343.45 -1.78 -38.10 16 15 C -0.23 -13.08 9.99 84.03 0.84 -12.24 16 16 H 0.05 3.06 7.83 -2.91 -0.02 3.04 16 17 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 18 N -0.94 -55.67 13.06 21.65 0.28 -55.38 16 19 Si 0.94 47.97 29.55 68.60 2.03 50.00 16 20 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 22 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 23 C -0.11 -3.15 4.67 30.59 0.14 -3.01 16 24 C -0.11 -2.17 5.75 30.60 0.18 -1.99 16 25 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 26 C -0.11 -1.97 5.76 30.59 0.18 -1.79 16 27 C -0.12 -3.28 4.58 30.59 0.14 -3.14 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 1.17 7.97 -2.39 -0.02 1.15 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.40 11.21 7.18 -92.71 -0.67 10.55 16 32 H 0.02 0.93 6.24 -2.38 -0.01 0.91 16 33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.38 19.71 6.46 -92.71 -0.60 19.11 16 35 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.05 1.73 7.10 -2.39 -0.02 1.71 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 1.18 6.78 -2.39 -0.02 1.17 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.14 7.60 -2.38 -0.02 1.12 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.91 6.28 -2.38 -0.01 1.90 16 Total: -1.00 -76.68 374.39 0.49 -76.19 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -2.13 Total: 25.09 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.70 Total: 7.94 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -3.98 Total: -135.94 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Atomic # 17 Polarization: 1.10 SS G_CDS: -0.08 Total: 1.02 kcal Total: -76.68 0.49 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570797065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.837 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds