Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34238 * 126.27987 * 2 1 4 4 H 0.96996 * 125.73513 * 359.77432 * 3 2 1 5 5 N 1.39930 * 108.52325 * 180.02562 * 3 2 1 6 6 C 1.30527 * 108.89287 * 0.02562 * 5 3 2 7 7 Cl 1.73602 * 126.00354 * 180.02562 * 6 5 3 8 8 C 1.38066 * 126.28155 * 180.02562 * 2 1 3 9 9 C 1.47379 * 126.42662 * 359.97438 * 8 2 1 10 10 O 1.21605 * 120.00309 * 89.99672 * 9 8 2 11 11 N 1.34777 * 120.00202 * 270.00660 * 9 8 2 12 12 C 1.46929 * 120.62706 * 354.15075 * 11 9 8 13 13 C 1.53630 * 108.54114 * 126.37154 * 12 11 9 14 14 C 1.53042 * 109.24158 * 54.85635 * 13 12 11 15 15 H 1.08998 * 109.44967 * 58.52757 * 14 13 12 16 16 C 1.52999 * 109.45702 * 178.49033 * 14 13 12 17 17 C 1.53044 * 109.53632 * 298.50869 * 14 13 12 18 18 C 1.46920 * 120.63434 * 174.43391 * 11 9 8 19 19 H 1.09003 * 109.59192 * 113.65105 * 18 11 9 20 20 C 1.52998 * 109.58509 * 353.37037 * 18 11 9 21 21 N 1.46500 * 109.47346 * 181.68129 * 20 18 11 22 22 C 1.36935 * 120.00747 * 184.95311 * 21 20 18 23 23 H 1.08004 * 119.99220 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00787 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99389 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00133 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47406 * 89.99949 * 26 24 22 28 28 H 1.48505 * 109.47155 * 209.99999 * 26 24 22 29 29 H 1.48500 * 109.47238 * 329.99593 * 26 24 22 30 30 H 1.09006 * 109.46972 * 89.97427 * 1 2 3 31 31 H 1.08997 * 109.46857 * 209.97124 * 1 2 3 32 32 H 1.09001 * 109.47391 * 329.97407 * 1 2 3 33 33 H 1.09000 * 109.58706 * 246.20152 * 12 11 9 34 34 H 1.08994 * 109.58630 * 6.63364 * 12 11 9 35 35 H 1.09006 * 109.63191 * 294.86349 * 13 12 11 36 36 H 1.09002 * 109.46141 * 174.74229 * 13 12 11 37 37 H 1.09007 * 109.47029 * 180.02562 * 16 14 13 38 38 H 1.08999 * 109.47381 * 300.06661 * 16 14 13 39 39 H 1.09003 * 109.47207 * 60.07341 * 16 14 13 40 40 H 1.08998 * 109.49765 * 301.41097 * 17 14 13 41 41 H 1.08996 * 109.49257 * 181.31755 * 17 14 13 42 42 H 1.08997 * 109.47356 * 301.68039 * 20 18 11 43 43 H 1.09000 * 109.47116 * 61.68243 * 20 18 11 44 44 H 0.97005 * 120.00035 * 4.95105 * 21 20 18 45 45 H 0.97004 * 119.99695 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0047 -0.0031 5 7 3.6340 0.6554 -0.0006 6 6 3.6598 -0.6496 -0.0015 7 17 5.0842 -1.6421 -0.0019 8 6 2.3240 -1.1130 -0.0005 9 6 1.8859 -2.5202 -0.0006 10 8 1.7047 -3.1005 -1.0537 11 7 1.6859 -3.1638 1.1665 12 6 2.0218 -2.5197 2.4437 13 6 0.7844 -2.5635 3.3532 14 6 0.3072 -4.0115 3.4863 15 1 1.1112 -4.6222 3.8970 16 6 -0.9025 -4.0656 4.4214 17 6 -0.0886 -4.5486 2.1089 18 6 1.1337 -4.5251 1.1857 19 1 1.8874 -5.2201 1.5560 20 6 0.7152 -4.9288 -0.2295 21 7 0.1282 -6.2707 -0.2012 22 6 -0.2290 -6.8868 -1.3708 23 1 -0.0783 -6.3831 -2.3142 24 6 -0.7847 -8.1585 -1.3440 25 7 -0.9679 -8.7725 -0.1943 26 14 -1.2726 -8.9984 -2.9396 27 1 -0.1227 -9.7820 -3.4583 28 1 -2.4192 -9.9084 -2.6895 29 1 -1.6639 -7.9726 -3.9395 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 2.8455 -3.0540 2.9169 34 1 2.3097 -1.4836 2.2658 35 1 -0.0106 -1.9568 2.9194 36 1 1.0433 -2.1738 4.3377 37 1 -1.2423 -5.0969 4.5167 38 1 -0.6209 -3.6831 5.4024 39 1 -1.7069 -3.4553 4.0106 40 1 -0.8754 -3.9233 1.6870 41 1 -0.4503 -5.5720 2.2078 42 1 -0.0201 -4.2185 -0.6075 43 1 1.5892 -4.9282 -0.8809 44 1 -0.0075 -6.7230 0.6462 45 1 -1.3559 -9.6613 -0.1755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656547297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = 53.533528 kcal Electronic energy + Delta-G solvation = -28655.885612 eV Core-core repulsion = 24736.580468 eV Total energy + Delta-G solvation = -3919.305144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84189 -40.01368 -37.42204 -37.00332 -34.72309 -33.78397 -32.97340 -32.18098 -31.17586 -29.70032 -28.37506 -27.48305 -25.47225 -23.67856 -23.39295 -22.20131 -22.00469 -20.76745 -20.10398 -18.86879 -17.86420 -16.96277 -16.41283 -15.93094 -15.48785 -15.41392 -15.01208 -14.52723 -14.43660 -14.02829 -13.80687 -13.67116 -13.52401 -13.42948 -13.04714 -12.86902 -12.76872 -12.64581 -12.18615 -12.16623 -11.94795 -11.80566 -11.77196 -11.38299 -11.01899 -10.91510 -10.82877 -10.72168 -10.65909 -10.35718 -10.22823 -9.93760 -9.71730 -9.58543 -9.11202 -8.82900 -8.61188 -8.29302 -6.71582 -5.62467 -2.88258 1.23305 1.25783 1.95282 2.59654 2.72400 3.22846 3.53810 3.58682 3.61119 4.21172 4.50478 4.61600 4.73252 4.75192 4.81555 4.88281 4.98737 5.12024 5.22862 5.32183 5.40891 5.43424 5.50203 5.59655 5.65395 5.69407 5.73554 5.78847 5.80973 5.92357 5.94924 6.10361 6.21031 6.29783 6.34062 6.36947 6.60954 6.66541 6.81688 6.98830 7.15096 7.35576 7.63327 7.88880 8.43763 8.59939 9.68480 10.27894 10.62874 11.61228 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.003765 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.503058 B = 7435.178700 C = 8565.249219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 N -0.450 5.450 4 H 0.447 0.553 5 N -0.279 5.279 6 C 0.157 3.843 7 Cl 0.022 6.978 8 C -0.259 4.259 9 C 0.589 3.411 10 O -0.502 6.502 11 N -0.596 5.596 12 C 0.112 3.888 13 C -0.126 4.126 14 C -0.094 4.094 15 H 0.071 0.929 16 C -0.144 4.144 17 C -0.119 4.119 18 C 0.140 3.860 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.737 5.737 22 C -0.223 4.223 23 H 0.070 0.930 24 C -0.019 4.019 25 N -0.939 5.939 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.058 0.942 44 H 0.379 0.621 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 22.572 9.925 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.104 5.104 6 C -0.035 4.035 7 Cl 0.049 6.951 8 C -0.275 4.275 9 C 0.373 3.627 10 O -0.375 6.375 11 N -0.330 5.330 12 C -0.012 4.012 13 C -0.165 4.165 14 C -0.113 4.113 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.157 4.157 18 C 0.038 3.962 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.383 5.383 22 C -0.354 4.354 23 H 0.088 0.912 24 C -0.214 4.214 25 N -0.589 5.589 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.209 1.209 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.212 0.788 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.927 23.171 9.162 25.612 hybrid contribution -0.679 -0.876 -0.471 1.204 sum 5.249 22.295 8.691 24.498 Atomic orbital electron populations 1.20638 0.85627 1.04777 1.04831 1.21407 0.94858 0.85889 0.96949 1.45823 1.03004 1.08576 1.58530 0.70695 1.77132 0.96558 1.10747 1.25995 1.22587 0.88929 0.90444 1.01568 1.98431 1.35169 1.64752 1.96711 1.19949 0.90994 0.95003 1.21532 1.17211 0.77512 0.84002 0.83930 1.90934 1.49435 1.65617 1.31541 1.48066 1.63273 1.16330 1.05310 1.21735 0.97209 0.98111 0.84097 1.22053 0.97637 0.97552 0.99212 1.21165 0.98162 0.95664 0.96288 0.91099 1.21800 0.97729 1.02197 0.98457 1.21999 0.97479 1.02929 0.93329 1.21611 0.94808 0.80715 0.99099 0.90945 1.21295 0.97436 0.87075 0.90882 1.42575 1.74777 1.14322 1.06642 1.19246 1.32086 0.97397 0.86706 0.91205 1.24678 1.02643 0.97452 0.96622 1.69658 1.51371 1.14623 1.23258 0.86208 0.77692 0.79317 0.83166 1.21894 1.21976 1.20860 0.88750 0.88735 0.90087 0.91324 0.90405 0.91658 0.91205 0.92254 0.93151 0.92880 0.91683 0.89520 0.95928 0.92458 0.78757 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.25 36.01 0.37 -0.34 16 2 C 0.14 1.37 7.29 -81.60 -0.60 0.77 16 3 N -0.45 -3.75 7.28 33.86 0.25 -3.50 16 4 H 0.45 1.94 8.96 -182.73 -1.64 0.30 16 5 N -0.28 -3.25 12.64 33.18 0.42 -2.83 16 6 C 0.16 2.04 7.82 -16.91 -0.13 1.91 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.24 16 8 C -0.26 -3.40 3.85 -105.04 -0.40 -3.80 16 9 C 0.59 9.43 6.88 -12.54 -0.09 9.34 16 10 O -0.50 -10.27 12.66 5.27 0.07 -10.20 16 11 N -0.60 -8.58 2.97 -166.23 -0.49 -9.07 16 12 C 0.11 1.20 6.38 -3.48 -0.02 1.18 16 13 C -0.13 -1.20 5.38 -26.38 -0.14 -1.34 16 14 C -0.09 -1.08 2.68 -90.58 -0.24 -1.32 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 16 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 17 C -0.12 -1.81 4.38 -26.61 -0.12 -1.93 16 18 C 0.14 2.40 3.10 -67.60 -0.21 2.19 16 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.57 4.14 -4.04 -0.02 3.55 16 21 N -0.74 -19.45 5.38 -59.91 -0.32 -19.78 16 22 C -0.22 -6.56 9.99 -15.06 -0.15 -6.71 16 23 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 24 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 25 N -0.94 -28.93 13.06 55.49 0.72 -28.20 16 26 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.79 7.96 -51.93 -0.41 0.38 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.78 6.27 -51.93 -0.33 0.45 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.52 6.90 -51.93 -0.36 1.17 16 42 H 0.02 0.54 7.25 -51.93 -0.38 0.16 16 43 H 0.06 1.43 6.22 -51.93 -0.32 1.10 16 44 H 0.38 10.16 6.37 -40.82 -0.26 9.90 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.30 376.51 -9.62 -44.91 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.89 Total: 4.24 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.50 Total: 1.69 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.58 Total: -63.39 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.30 -9.62 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656547297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.446 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds