Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34234 * 126.28096 * 2 1 4 4 H 0.97003 * 125.73998 * 359.97438 * 3 2 1 5 5 N 1.39935 * 108.52531 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.89065 * 0.02562 * 5 3 2 7 7 Cl 1.73606 * 126.00191 * 180.02562 * 6 5 3 8 8 C 1.38070 * 126.28384 * 179.97438 * 2 1 3 9 9 C 1.47381 * 126.41990 * 0.02562 * 8 2 1 10 10 O 1.21607 * 120.00542 * 89.99738 * 9 8 2 11 11 N 1.34779 * 119.99842 * 269.99536 * 9 8 2 12 12 C 1.46918 * 120.63170 * 359.72068 * 11 9 8 13 13 C 1.52762 * 109.01363 * 233.58173 * 12 11 9 14 14 C 1.53040 * 109.38181 * 305.59283 * 13 12 11 15 15 C 1.53036 * 109.54313 * 61.23295 * 14 13 12 16 16 H 1.09008 * 109.51870 * 58.60210 * 15 14 13 17 17 C 1.52991 * 109.50114 * 178.68317 * 15 14 13 18 18 C 1.53006 * 109.47479 * 184.84127 * 17 15 14 19 19 N 1.46499 * 109.47109 * 180.02562 * 18 17 15 20 20 C 1.36939 * 119.99832 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99960 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00378 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99567 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48489 * 109.46985 * 89.99930 * 24 22 20 26 26 H 1.48495 * 109.46953 * 210.00252 * 24 22 20 27 27 H 1.48501 * 109.46947 * 329.99978 * 24 22 20 28 28 C 1.46934 * 120.62855 * 179.97438 * 11 9 8 29 29 H 1.08993 * 109.46864 * 90.02705 * 1 2 3 30 30 H 1.08997 * 109.46609 * 210.02381 * 1 2 3 31 31 H 1.09000 * 109.46726 * 330.02561 * 1 2 3 32 32 H 1.09002 * 109.58949 * 353.42189 * 12 11 9 33 33 H 1.09006 * 109.58721 * 113.84445 * 12 11 9 34 34 H 1.08997 * 109.56536 * 185.55344 * 13 12 11 35 35 H 1.09007 * 109.38199 * 65.51353 * 13 12 11 36 36 H 1.09009 * 109.45656 * 301.21227 * 14 13 12 37 37 H 1.08999 * 109.45823 * 181.25762 * 14 13 12 38 38 H 1.09006 * 109.47426 * 304.83892 * 17 15 14 39 39 H 1.09000 * 109.47406 * 64.84138 * 17 15 14 40 40 H 1.09006 * 109.46600 * 300.00271 * 18 17 15 41 41 H 1.09000 * 109.46792 * 59.99635 * 18 17 15 42 42 H 0.96992 * 120.00053 * 0.02562 * 19 18 17 43 43 H 0.96993 * 120.00012 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.58274 * 246.15630 * 28 11 9 45 45 H 1.08996 * 109.58571 * 6.58611 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0048 -0.0004 5 7 3.6340 0.6554 0.0006 6 6 3.6599 -0.6497 0.0004 7 17 5.0843 -1.6422 0.0016 8 6 2.3241 -1.1130 0.0005 9 6 1.8859 -2.5201 0.0006 10 8 1.7054 -3.1010 -1.0525 11 7 1.6852 -3.1633 1.1679 12 6 1.9050 -2.4770 2.4482 13 6 2.8633 -3.3075 3.3000 14 6 2.3189 -4.7314 3.4350 15 6 2.2194 -5.3749 2.0501 16 1 3.2035 -5.3844 1.5813 17 6 1.7062 -6.8094 2.1892 18 6 1.7212 -7.4916 0.8197 19 7 1.2292 -8.8651 0.9528 20 6 1.1520 -9.6745 -0.1490 21 1 1.4541 -9.3005 -1.1161 22 6 0.6863 -10.9761 -0.0229 23 7 0.3185 -11.4320 1.1558 24 14 0.5816 -12.0804 -1.5258 25 1 1.8603 -12.8176 -1.6884 26 1 -0.5299 -13.0496 -1.3514 27 1 0.3310 -11.2518 -2.7324 28 6 1.2478 -4.5660 1.1841 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 2.3387 -1.4937 2.2660 33 1 0.9554 -2.3683 2.9723 34 1 2.9558 -2.8580 4.2887 35 1 3.8417 -3.3360 2.8202 36 1 1.3301 -4.7002 3.8929 37 1 2.9904 -5.3190 4.0611 38 1 2.3486 -7.3602 2.8764 39 1 0.6875 -6.7950 2.5767 40 1 1.0789 -6.9409 0.1324 41 1 2.7399 -7.5061 0.4322 42 1 0.9575 -9.2008 1.8213 43 1 -0.0073 -12.3414 1.2439 44 1 0.2437 -4.6307 1.6032 45 1 1.2483 -4.9606 0.1681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666115995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = 31.562463 kcal Electronic energy + Delta-G solvation = -27529.342502 eV Core-core repulsion = 23609.084621 eV Total energy + Delta-G solvation = -3920.257881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.01354 -39.95389 -37.67958 -37.14811 -35.28574 -33.50976 -33.13858 -32.14023 -31.67414 -30.55372 -28.19395 -27.34405 -25.63976 -24.15383 -22.63665 -22.37961 -22.32568 -20.76650 -20.04203 -19.16099 -18.02042 -17.05913 -16.86118 -16.20423 -15.63827 -15.57901 -15.16137 -14.83630 -14.68099 -14.31828 -13.87700 -13.74415 -13.61840 -13.51176 -13.34688 -13.10095 -12.98653 -12.78063 -12.62252 -12.32496 -12.14739 -12.07335 -11.37085 -11.12791 -11.09581 -11.04720 -10.97557 -10.79633 -10.53919 -10.38860 -10.19894 -10.03750 -9.87911 -9.85304 -9.58187 -9.12426 -8.78174 -8.67494 -6.83021 -5.69031 -2.96842 1.06886 1.09201 1.76625 2.38524 2.46986 3.00672 3.49832 3.54712 3.56991 4.00894 4.30762 4.39562 4.58432 4.68030 4.69732 4.80865 4.88582 4.91346 5.00238 5.17845 5.21493 5.25984 5.31323 5.45676 5.49531 5.62713 5.66185 5.68653 5.75202 5.83904 5.96017 6.03789 6.10382 6.27380 6.32142 6.40163 6.49211 6.50287 6.57159 6.81743 6.96593 6.99656 7.30778 7.79175 8.10046 8.50713 9.61500 10.20511 10.55179 11.54233 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.002508 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.334753 B =11163.494660 C =11439.582788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.276 5.276 6 C 0.159 3.841 7 Cl 0.025 6.975 8 C -0.262 4.262 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.135 4.135 14 C -0.114 4.114 15 C -0.096 4.096 16 H 0.075 0.925 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.115 3.885 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.070 0.930 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 30.725 5.430 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 N -0.158 5.158 4 H 0.295 0.705 5 N -0.101 5.101 6 C -0.034 4.034 7 Cl 0.053 6.947 8 C -0.278 4.278 9 C 0.380 3.620 10 O -0.397 6.397 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.152 4.152 15 C -0.116 4.116 16 H 0.093 0.907 17 C -0.156 4.156 18 C 0.023 3.977 19 N -0.378 5.378 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.586 5.586 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.007 4.007 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.364 31.289 4.677 31.815 hybrid contribution -0.452 -1.021 -0.439 1.200 sum 2.912 30.268 4.238 30.701 Atomic orbital electron populations 1.20637 0.85569 1.04843 1.04818 1.21422 0.94883 0.85929 0.96896 1.45843 1.03022 1.08640 1.58250 0.70547 1.77177 0.96473 1.10695 1.25771 1.22593 0.88961 0.90473 1.01363 1.98443 1.35008 1.64625 1.96667 1.19770 0.91169 0.94582 1.22248 1.17160 0.76955 0.84301 0.83596 1.90837 1.50582 1.67398 1.30900 1.48078 1.66755 1.13087 1.05352 1.21587 0.99541 0.95943 0.84123 1.21846 0.99394 0.96330 0.99741 1.21587 1.01523 0.94973 0.97096 1.21472 0.99792 0.94991 0.95327 0.90685 1.21727 1.01321 0.93233 0.99350 1.20720 0.96661 0.86651 0.93685 1.42374 1.78036 1.08503 1.08901 1.19271 1.35546 0.93116 0.88702 0.91179 1.24732 1.02297 0.97440 0.96756 1.69662 1.50445 1.16685 1.21763 0.86186 0.77167 0.80608 0.82282 1.21782 1.21822 1.20709 1.21884 0.97143 0.78648 1.03014 0.88739 0.88842 0.89894 0.90412 0.91348 0.90853 0.91365 0.91677 0.91418 0.91563 0.91787 0.96126 0.96492 0.78388 0.93625 0.91135 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.25 36.01 0.37 -0.08 16 2 C 0.14 1.07 7.29 -81.60 -0.60 0.48 16 3 N -0.45 -2.98 7.28 33.86 0.25 -2.73 16 4 H 0.45 1.21 8.96 -182.72 -1.64 -0.43 16 5 N -0.28 -2.82 12.64 33.18 0.42 -2.40 16 6 C 0.16 1.81 7.79 -16.91 -0.13 1.68 16 7 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.23 16 8 C -0.26 -2.90 3.86 -105.04 -0.41 -3.31 16 9 C 0.59 8.01 7.05 -12.54 -0.09 7.92 16 10 O -0.52 -9.26 16.52 5.27 0.09 -9.18 16 11 N -0.60 -6.96 2.98 -174.29 -0.52 -7.48 16 12 C 0.11 0.95 6.31 -3.94 -0.02 0.92 16 13 C -0.13 -1.15 6.07 -26.83 -0.16 -1.31 16 14 C -0.11 -1.14 5.17 -26.69 -0.14 -1.28 16 15 C -0.10 -1.24 2.34 -90.48 -0.21 -1.45 16 16 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 17 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 18 C 0.15 3.14 6.02 -4.04 -0.02 3.12 16 19 N -0.73 -19.35 5.60 -59.90 -0.34 -19.69 16 20 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 21 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 22 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 23 N -0.94 -29.04 13.06 55.49 0.72 -28.31 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.11 1.51 5.33 -3.68 -0.02 1.49 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.49 7.96 -51.93 -0.41 0.08 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.63 6.26 -51.93 -0.33 0.31 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.44 6.70 -51.93 -0.35 0.10 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.63 5.72 -51.93 -0.30 1.33 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.15 383.03 -9.90 -46.05 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.95 Total: 2.50 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.81 Total: -1.44 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.54 Total: -60.61 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.15 -9.90 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666115995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.615 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds