Wall clock time and date at job start Sat Apr 11 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47213 * 2 1 4 4 N 1.46504 * 109.47091 * 119.99605 * 2 1 3 5 5 N 1.39926 * 125.75041 * 300.00421 * 4 2 1 6 6 C 1.30413 * 108.95990 * 179.71018 * 5 4 2 7 7 C 1.41348 * 108.04786 * 0.44388 * 6 5 4 8 8 C 1.47298 * 126.43741 * 179.81894 * 7 6 5 9 9 O 1.21613 * 120.00116 * 186.06967 * 8 7 6 10 10 N 1.34777 * 119.99681 * 6.06697 * 8 7 6 11 11 C 1.47422 * 125.65042 * 5.59187 * 10 8 7 12 12 C 1.54917 * 104.83201 * 155.83703 * 11 10 8 13 13 C 1.55150 * 101.57864 * 37.00840 * 12 11 10 14 14 C 1.47022 * 125.64551 * 185.54836 * 10 8 7 15 15 H 1.08995 * 110.01403 * 300.58938 * 14 10 8 16 16 C 1.53010 * 109.88121 * 61.68238 * 14 10 8 17 17 N 1.46506 * 109.46759 * 287.89338 * 16 14 10 18 18 C 1.36937 * 119.99748 * 172.29065 * 17 16 14 19 19 H 1.08002 * 119.99886 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99663 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00680 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99685 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47042 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46837 * 120.00156 * 22 20 18 25 25 H 1.48501 * 109.46839 * 239.99589 * 22 20 18 26 26 C 1.34353 * 125.74772 * 119.99815 * 4 2 1 27 27 Cl 1.73591 * 126.31871 * 359.97438 * 26 4 2 28 28 H 1.09004 * 109.47186 * 300.00482 * 1 2 3 29 29 H 1.08999 * 109.47100 * 60.00173 * 1 2 3 30 30 H 1.09001 * 109.47472 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47287 * 239.99356 * 2 1 3 32 32 H 1.08992 * 109.47021 * 59.99618 * 3 2 1 33 33 H 1.08999 * 109.46944 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46734 * 299.99556 * 3 2 1 35 35 H 1.07994 * 125.98019 * 180.25654 * 6 5 4 36 36 H 1.08996 * 110.37074 * 274.67418 * 11 10 8 37 37 H 1.09004 * 110.36699 * 36.88737 * 11 10 8 38 38 H 1.09006 * 111.00172 * 278.93494 * 12 11 10 39 39 H 1.08997 * 111.00208 * 155.08313 * 12 11 10 40 40 H 1.09004 * 110.72002 * 206.13696 * 13 12 11 41 41 H 1.09004 * 110.72240 * 82.86611 * 13 12 11 42 42 H 1.08999 * 109.47350 * 47.89008 * 16 14 10 43 43 H 1.08990 * 109.47006 * 167.89669 * 16 14 10 44 44 H 0.97003 * 120.00028 * 352.29762 * 17 16 14 45 45 H 0.96999 * 120.00748 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 7 1.7554 -0.3188 2.5194 6 6 2.3441 -1.1621 3.3213 7 6 3.0257 -2.1153 2.5309 8 6 3.8270 -3.2485 3.0241 9 8 4.4557 -3.9349 2.2414 10 7 3.8634 -3.5247 4.3427 11 6 3.0642 -2.8532 5.3837 12 6 2.9806 -3.8782 6.5423 13 6 4.3917 -4.5210 6.4918 14 6 4.7063 -4.5463 4.9812 15 1 4.4761 -5.5295 4.5709 16 6 6.1834 -4.2198 4.7517 17 7 6.5281 -4.4755 3.3509 18 6 7.7560 -4.1067 2.8697 19 1 8.4704 -3.6278 3.5230 20 6 8.0823 -4.3484 1.5424 21 7 7.2116 -4.9316 0.7462 22 14 9.7576 -3.8460 0.8862 23 1 10.5464 -3.2146 1.9743 24 1 10.4748 -5.0474 0.3885 25 1 9.5834 -2.8775 -0.2260 26 6 2.7939 -1.7875 1.2077 27 17 3.3937 -2.6371 -0.1822 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 2.3181 -1.1349 4.4006 36 1 3.5632 -1.9435 5.7173 37 1 2.0678 -2.6221 5.0068 38 1 2.2058 -4.6209 6.3518 39 1 2.8134 -3.3771 7.4958 40 1 4.3696 -5.5323 6.8980 41 1 5.1154 -3.9054 7.0262 42 1 6.3641 -3.1704 4.9846 43 1 6.7985 -4.8465 5.3974 44 1 5.8865 -4.9059 2.7643 45 1 7.4397 -5.1009 -0.1813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666443555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:28 Heat of formation + Delta-G solvation = 53.472606 kcal Electronic energy + Delta-G solvation = -28645.066022 eV Core-core repulsion = 24725.758236 eV Total energy + Delta-G solvation = -3919.307786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58776 -40.74915 -38.17240 -37.88380 -36.78293 -36.08725 -33.36689 -32.58033 -31.74387 -30.79046 -30.09018 -28.28414 -26.68771 -25.14881 -24.51342 -23.78419 -22.40886 -21.70961 -21.25993 -20.03724 -19.08502 -18.32374 -17.53450 -17.33522 -16.69041 -16.63540 -16.13552 -15.81843 -15.33067 -15.17785 -14.92920 -14.78403 -14.72158 -14.38347 -14.02065 -13.75922 -13.51927 -13.37576 -13.28319 -13.22776 -13.02638 -13.01516 -12.91466 -12.87600 -12.60875 -12.44439 -12.20100 -12.09138 -11.91119 -11.83151 -11.78003 -11.53411 -11.42419 -10.85067 -10.51396 -10.41197 -9.79361 -9.32294 -8.70965 -7.72467 -5.00078 0.20309 0.31774 1.10486 1.42126 1.44243 1.45426 1.53436 2.21482 2.59191 2.62090 3.21281 3.53723 3.66241 3.76330 3.79666 3.82257 3.92334 3.96332 4.07399 4.13533 4.29910 4.43259 4.51058 4.55256 4.57993 4.62994 4.73268 4.74162 4.74816 4.90576 4.92754 4.99426 5.04421 5.09684 5.15515 5.24689 5.26631 5.28249 5.49309 5.53636 5.54972 5.74553 6.29601 6.43246 6.82183 7.46066 7.64885 8.43078 8.75821 9.47688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.005110 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.080198 B = 5478.357821 C = 7819.381266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.131 3.869 3 C -0.154 4.154 4 N -0.342 5.342 5 N -0.275 5.275 6 C 0.082 3.918 7 C -0.277 4.277 8 C 0.574 3.426 9 O -0.514 6.514 10 N -0.614 5.614 11 C 0.081 3.919 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.135 3.865 15 H 0.046 0.954 16 C 0.142 3.858 17 N -0.739 5.739 18 C -0.244 4.244 19 H 0.060 0.940 20 C -0.069 4.069 21 N -0.942 5.942 22 Si 0.958 3.042 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.299 1.299 26 C 0.163 3.837 27 Cl 0.019 6.981 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.011 0.989 43 H 0.021 0.979 44 H 0.393 0.607 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 11.712 7.797 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 C -0.211 4.211 4 N -0.125 5.125 5 N -0.096 5.096 6 C -0.104 4.104 7 C -0.293 4.293 8 C 0.362 3.638 9 O -0.388 6.388 10 N -0.350 5.350 11 C -0.041 4.041 12 C -0.154 4.154 13 C -0.153 4.153 14 C 0.031 3.969 15 H 0.064 0.936 16 C 0.014 3.986 17 N -0.391 5.391 18 C -0.377 4.377 19 H 0.078 0.922 20 C -0.262 4.262 21 N -0.592 5.592 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.220 1.220 25 H -0.227 1.227 26 C 0.004 3.996 27 Cl 0.048 6.952 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.252 0.748 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.235 0.765 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.829 12.468 6.923 24.425 hybrid contribution 1.879 -0.993 -1.285 2.483 sum -17.950 11.475 5.639 22.038 Atomic orbital electron populations 1.22091 0.90585 1.03090 1.04996 1.21975 0.97687 0.94854 0.82345 1.22113 1.01010 0.92976 1.05039 1.49186 1.36754 1.19039 1.07520 1.77137 1.24408 1.22705 0.85379 1.24983 0.93376 0.90146 1.01858 1.19980 1.13379 1.04707 0.91205 1.17244 0.80941 0.83814 0.81773 1.90855 1.42654 1.50322 1.55019 1.48206 1.43099 1.38431 1.05241 1.22949 0.95946 0.97063 0.88120 1.22789 0.95926 0.97921 0.98776 1.22622 0.98558 1.03470 0.90600 1.21790 0.89235 0.90788 0.95079 0.93561 1.21216 0.93947 0.96688 0.86761 1.43299 1.16008 1.72228 1.07538 1.19539 0.92965 1.31172 0.94015 0.92214 1.25422 1.00852 1.03067 0.96898 1.69986 1.35261 1.49294 1.04682 0.85299 0.80879 0.77023 0.77984 1.19407 1.21994 1.22657 1.22271 0.95680 0.90486 0.91211 1.98482 1.84983 1.73607 1.38174 0.91022 0.87373 0.92753 0.87711 0.90999 0.93584 0.87238 0.74799 0.89962 0.88661 0.90178 0.86319 0.88638 0.89455 0.97057 0.96175 0.76459 0.95118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.44 71.98 0.68 -1.50 16 2 C 0.13 2.60 3.66 44.99 0.16 2.76 16 3 C -0.15 -2.55 9.45 71.98 0.68 -1.87 16 4 N -0.34 -9.41 3.25 -315.64 -1.03 -10.43 16 5 N -0.28 -7.23 12.33 -56.26 -0.69 -7.92 16 6 C 0.08 2.14 10.29 85.67 0.88 3.02 16 7 C -0.28 -9.76 6.06 -20.12 -0.12 -9.88 16 8 C 0.57 24.08 7.53 86.63 0.65 24.74 16 9 O -0.51 -27.48 11.99 -4.07 -0.05 -27.52 16 10 N -0.61 -20.51 3.06 -792.02 -2.43 -22.93 16 11 C 0.08 1.59 5.11 86.86 0.44 2.04 16 12 C -0.12 -1.71 7.09 31.99 0.23 -1.48 16 13 C -0.11 -2.40 6.46 31.78 0.21 -2.19 16 14 C 0.14 4.67 3.07 45.34 0.14 4.81 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.14 6.32 5.64 86.38 0.49 6.81 16 17 N -0.74 -42.79 4.42 -343.44 -1.52 -44.30 16 18 C -0.24 -15.31 9.99 84.03 0.84 -14.47 16 19 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 20 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 21 N -0.94 -63.61 13.06 21.65 0.28 -63.33 16 22 Si 0.96 50.67 29.55 68.60 2.03 52.70 16 23 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 26 C 0.16 5.66 7.53 84.32 0.63 6.30 16 27 Cl 0.02 0.74 27.03 -2.72 -0.07 0.67 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 2.07 7.23 -2.39 -0.02 2.05 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.11 8.14 -2.38 -0.02 1.10 16 35 H 0.24 4.10 4.83 -2.91 -0.01 4.09 16 36 H 0.08 1.39 7.76 -2.39 -0.02 1.37 16 37 H 0.10 1.53 5.85 -2.38 -0.01 1.52 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.09 1.70 7.85 -2.38 -0.02 1.69 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.39 24.61 4.64 -92.95 -0.43 24.18 16 45 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -87.36 374.79 3.48 -83.87 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.58 Total: 24.06 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.38 Total: 15.16 kcal Atomic # 7 Polarization: -143.54 SS G_CDS: -5.38 Total: -148.92 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.03 Total: 52.70 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -0.07 Total: 0.67 kcal Total: -87.36 3.48 -83.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666443555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.346 kcal (2) G-P(sol) polarization free energy of solvation -87.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds