Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47118 * 2 1 4 4 N 1.34232 * 126.27631 * 265.13931 * 3 2 1 5 5 H 0.96998 * 125.74156 * 0.04181 * 4 3 2 6 6 N 1.39936 * 108.52129 * 180.27758 * 4 3 2 7 7 C 1.30531 * 108.89241 * 359.74230 * 6 4 3 8 8 Cl 1.73603 * 126.00637 * 179.97438 * 7 6 4 9 9 C 1.38061 * 126.28368 * 84.99343 * 3 2 1 10 10 C 1.47389 * 126.42255 * 359.97438 * 9 3 2 11 11 O 1.21613 * 119.99935 * 269.71073 * 10 9 3 12 12 N 1.34777 * 120.00041 * 89.43676 * 10 9 3 13 13 C 1.46504 * 119.99854 * 180.27819 * 12 10 9 14 14 H 1.09000 * 110.01261 * 325.69599 * 13 12 10 15 15 C 1.53875 * 110.03307 * 87.09088 * 13 12 10 16 16 C 1.54265 * 106.59804 * 119.28522 * 15 13 12 17 17 C 1.54888 * 104.19765 * 23.60813 * 16 15 13 18 18 H 1.08997 * 110.75730 * 80.37221 * 17 16 15 19 19 C 1.53001 * 110.75445 * 203.56134 * 17 16 15 20 20 N 1.46499 * 109.46997 * 293.54573 * 19 17 16 21 21 C 1.36936 * 120.00164 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99689 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00239 * 179.97438 * 21 20 19 24 24 N 1.31610 * 119.99745 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47282 * 120.00316 * 25 23 21 28 28 H 1.48502 * 109.47147 * 240.00351 * 25 23 21 29 29 C 1.54265 * 110.02742 * 204.30818 * 13 12 10 30 30 H 1.08995 * 109.47568 * 299.99942 * 1 2 3 31 31 H 1.09003 * 109.46867 * 60.00736 * 1 2 3 32 32 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47295 * 239.99700 * 2 1 3 34 34 H 1.09003 * 109.47358 * 119.99457 * 2 1 3 35 35 H 0.97000 * 119.99736 * 0.27094 * 12 10 9 36 36 H 1.09007 * 110.02804 * 238.56619 * 15 13 12 37 37 H 1.08996 * 110.03210 * 359.94489 * 15 13 12 38 38 H 1.09000 * 110.48750 * 142.28742 * 16 15 13 39 39 H 1.09006 * 110.48214 * 264.79466 * 16 15 13 40 40 H 1.09001 * 109.47307 * 53.54484 * 19 17 16 41 41 H 1.08997 * 109.47231 * 173.54650 * 19 17 16 42 42 H 0.96998 * 119.99814 * 359.97438 * 20 19 17 43 43 H 0.97004 * 119.99917 * 179.97438 * 24 23 21 44 44 H 1.09003 * 110.48685 * 335.77839 * 29 13 12 45 45 H 1.08991 * 110.48938 * 98.42694 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3835 2.1391 -1.0783 5 1 2.3569 1.8309 -1.9976 6 7 2.7997 3.4055 -0.6525 7 6 2.7025 3.4674 0.6477 8 17 3.1043 4.8360 1.6372 9 6 2.2131 2.2235 1.1087 10 6 1.9508 1.8516 2.5105 11 8 0.8551 2.0530 2.9982 12 7 2.9235 1.2831 3.2502 13 6 2.6608 0.9078 4.6418 14 1 1.9746 1.6217 5.0975 15 6 2.0641 -0.5092 4.7019 16 6 3.0442 -1.3654 5.5302 17 6 3.8063 -0.3354 6.4005 18 1 3.2125 -0.0484 7.2684 19 6 5.1639 -0.8914 6.8348 20 7 4.9604 -2.0233 7.7423 21 6 6.0396 -2.6852 8.2641 22 1 7.0408 -2.3731 8.0063 23 6 5.8467 -3.7574 9.1245 24 7 4.6265 -4.1380 9.4382 25 14 7.3189 -4.6607 9.8357 26 1 8.5707 -4.0419 9.3305 27 1 7.2860 -4.5711 11.3176 28 1 7.2704 -6.0869 9.4249 29 6 3.9827 0.8646 5.4358 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7974 1.1224 2.8612 36 1 1.0886 -0.4832 5.1877 37 1 1.9690 -0.9173 3.6957 38 1 2.4987 -2.0678 6.1604 39 1 3.7332 -1.8980 4.8747 40 1 5.7177 -1.2246 5.9570 41 1 5.7288 -0.1124 7.3467 42 1 4.0611 -2.3034 7.9741 43 1 4.4917 -4.8875 10.0391 44 1 4.8251 0.6942 4.7654 45 1 4.1212 1.7888 5.9968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676933536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = -2.062817 kcal Electronic energy + Delta-G solvation = -26942.905057 eV Core-core repulsion = 23021.189075 eV Total energy + Delta-G solvation = -3921.715982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.70776 -40.72424 -39.01278 -37.97837 -36.42339 -35.18166 -34.71245 -33.03526 -32.41014 -30.70871 -30.07141 -28.81394 -26.25207 -25.18996 -23.94222 -23.61766 -22.98016 -21.46256 -21.04367 -20.47226 -19.11774 -18.96871 -17.61982 -17.44109 -16.77028 -16.52684 -16.45075 -16.19409 -15.77412 -15.52391 -15.14060 -15.08236 -14.81948 -14.61707 -14.45803 -14.10934 -13.76032 -13.42953 -13.20472 -13.15344 -12.92871 -12.82932 -12.69511 -12.60076 -12.37669 -12.22900 -12.09978 -12.03925 -11.81891 -11.74420 -11.57530 -11.46984 -11.37952 -11.05408 -10.89348 -10.60588 -10.05552 -9.93814 -8.94793 -7.92304 -5.20144 0.33244 0.41804 0.97617 1.48368 1.49030 1.49732 1.59746 1.80013 2.32814 2.58656 3.38730 3.41492 3.59516 3.65002 3.68977 3.86729 3.97032 4.04554 4.20920 4.24349 4.39357 4.46914 4.54636 4.57200 4.59809 4.66105 4.72125 4.77654 4.82110 4.95953 4.97649 5.03484 5.07344 5.18148 5.21904 5.27612 5.32031 5.42058 5.51757 5.60005 5.64070 5.94374 6.19957 6.30744 6.55074 7.22534 7.36899 8.15174 8.37591 9.31710 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002190 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.262254 B =12780.070745 C =13396.511463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C 0.168 3.832 4 N -0.426 5.426 5 H 0.466 0.534 6 N -0.293 5.293 7 C 0.147 3.853 8 Cl 0.016 6.984 9 C -0.295 4.295 10 C 0.603 3.397 11 O -0.567 6.567 12 N -0.698 5.698 13 C 0.149 3.851 14 H 0.080 0.920 15 C -0.122 4.122 16 C -0.105 4.105 17 C -0.092 4.092 18 H 0.067 0.933 19 C 0.161 3.839 20 N -0.745 5.745 21 C -0.241 4.241 22 H 0.075 0.925 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.972 3.028 26 H -0.266 1.266 27 H -0.295 1.295 28 H -0.293 1.293 29 C -0.107 4.107 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.018 0.982 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 12.915 -26.101 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C 0.034 3.966 4 N -0.137 5.137 5 H 0.316 0.684 6 N -0.119 5.119 7 C -0.045 4.045 8 Cl 0.044 6.956 9 C -0.310 4.310 10 C 0.388 3.612 11 O -0.445 6.445 12 N -0.349 5.349 13 C 0.044 3.956 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.143 4.143 17 C -0.111 4.111 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.388 5.388 21 C -0.373 4.373 22 H 0.093 0.907 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.801 3.199 26 H -0.190 1.190 27 H -0.222 1.222 28 H -0.220 1.220 29 C -0.146 4.146 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.115 0.885 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.089 13.842 -26.701 30.686 hybrid contribution 0.473 -1.011 1.132 1.589 sum -5.617 12.831 -25.569 29.154 Atomic orbital electron populations 1.21753 0.93127 1.03662 1.02156 1.20586 0.97087 0.86287 1.06721 1.21773 0.93794 0.95765 0.85300 1.45867 1.49825 1.08152 1.09861 0.68410 1.77114 1.23749 1.00564 1.10473 1.22654 1.00575 0.90330 0.90969 1.98423 1.91994 1.40101 1.65073 1.19752 1.21351 0.95227 0.94684 1.17264 0.83683 0.76012 0.84271 1.90786 1.25066 1.55368 1.73291 1.46095 1.15371 1.61063 1.12405 1.21546 0.97320 0.95994 0.80750 0.90191 1.22479 0.98530 0.94378 1.00654 1.22225 0.97542 0.97040 0.97521 1.22153 0.95753 0.95460 0.97723 0.91462 1.20791 0.95238 0.88542 0.91990 1.42586 1.05559 1.35689 1.54919 1.19682 0.88535 1.08789 1.20293 0.90668 1.25555 0.98995 1.00672 1.01792 1.69823 1.20969 1.30514 1.40859 0.85088 0.79285 0.78035 0.77459 1.18999 1.22218 1.22035 1.22533 0.96521 0.98080 0.97444 0.94154 0.91572 0.89648 0.85883 0.88500 0.75084 0.91852 0.90608 0.93438 0.91705 0.95718 0.96447 0.79427 0.94084 0.89225 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16 2 C -0.07 -0.53 6.27 29.85 0.19 -0.34 16 3 C 0.17 2.19 6.55 42.15 0.28 2.46 16 4 N -0.43 -4.72 7.28 -46.79 -0.34 -5.06 16 5 H 0.47 1.40 8.96 -213.43 -1.91 -0.51 16 6 N -0.29 -5.45 12.64 -48.95 -0.62 -6.07 16 7 C 0.15 3.05 7.89 85.66 0.68 3.73 16 8 Cl 0.02 0.33 29.19 -2.72 -0.08 0.25 16 9 C -0.29 -5.76 5.88 -20.13 -0.12 -5.88 16 10 C 0.60 13.90 7.25 86.65 0.63 14.53 16 11 O -0.57 -17.56 16.77 -4.07 -0.07 -17.63 16 12 N -0.70 -13.35 4.98 -442.39 -2.21 -15.55 16 13 C 0.15 3.29 3.23 45.71 0.15 3.43 16 14 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 15 C -0.12 -2.89 6.59 31.32 0.21 -2.68 16 16 C -0.11 -3.05 5.97 31.67 0.19 -2.86 16 17 C -0.09 -2.75 2.95 -9.47 -0.03 -2.78 16 18 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.16 6.14 5.71 86.38 0.49 6.63 16 20 N -0.75 -37.48 5.45 -343.46 -1.87 -39.35 16 21 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 25 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 29 C -0.11 -2.36 5.99 31.70 0.19 -2.17 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.41 6.03 8.33 -92.71 -0.77 5.26 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.62 7.92 -2.39 -0.02 1.60 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.89 8.02 -2.38 -0.02 1.87 16 40 H 0.02 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.37 20.09 7.53 -92.71 -0.70 19.39 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.09 1.71 7.64 -2.39 -0.02 1.69 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -74.40 391.50 -0.35 -74.75 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -2.34 Total: 23.16 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.87 Total: -3.29 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -4.75 Total: -125.31 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.07 Total: -17.63 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -74.40 -0.35 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676933536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.684 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds