Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00106 * 85.80855 * 4 3 2 6 6 O 1.21610 * 120.00109 * 187.40190 * 5 4 3 7 7 C 1.47381 * 120.00105 * 7.66845 * 5 4 3 8 8 C 1.38064 * 126.42331 * 340.69725 * 7 5 4 9 9 N 1.34235 * 107.43994 * 179.83101 * 8 7 5 10 10 C 1.46502 * 125.74225 * 180.19491 * 9 8 7 11 11 N 1.39926 * 108.51995 * 0.42529 * 9 8 7 12 12 C 1.30530 * 108.89583 * 359.73009 * 11 9 8 13 13 Cl 1.73604 * 126.00472 * 180.02562 * 12 11 9 14 14 C 1.46500 * 119.99772 * 265.80484 * 4 3 2 15 15 H 1.09004 * 110.64268 * 13.32756 * 14 4 3 16 16 C 1.55154 * 110.72259 * 249.98517 * 14 4 3 17 17 C 1.54904 * 101.58547 * 277.14112 * 16 14 4 18 18 N 1.47425 * 104.83202 * 322.98831 * 17 16 14 19 19 C 1.36931 * 125.64857 * 204.09067 * 18 17 16 20 20 H 1.08001 * 119.99946 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00370 * 0.04327 * 19 18 17 22 22 N 1.31623 * 119.99608 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00564 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47381 * 119.99729 * 23 21 19 26 26 H 1.48498 * 109.47214 * 239.99999 * 23 21 19 27 27 C 1.47027 * 108.70260 * 24.12895 * 18 17 16 28 28 H 1.08994 * 109.47298 * 59.99722 * 1 2 3 29 29 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46926 * 299.99883 * 1 2 3 31 31 H 1.09003 * 109.47660 * 240.00243 * 2 1 3 32 32 H 1.09003 * 109.47448 * 120.00009 * 2 1 3 33 33 H 1.09003 * 109.47160 * 60.00260 * 3 2 1 34 34 H 1.08994 * 109.47297 * 300.00279 * 3 2 1 35 35 H 1.08006 * 126.28134 * 359.97438 * 8 7 5 36 36 H 1.09005 * 109.46829 * 270.30006 * 10 9 8 37 37 H 1.09004 * 109.47206 * 30.29196 * 10 9 8 38 38 H 1.08998 * 109.47454 * 150.29776 * 10 9 8 39 39 H 1.09006 * 111.00311 * 35.21966 * 16 14 4 40 40 H 1.09005 * 111.00455 * 159.06023 * 16 14 4 41 41 H 1.08998 * 110.36806 * 204.15215 * 17 16 14 42 42 H 1.08997 * 110.45837 * 81.87196 * 17 16 14 43 43 H 0.96998 * 119.99932 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.87731 * 239.52483 * 27 18 17 45 45 H 1.09001 * 109.88210 * 118.35485 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1783 1.3575 -1.1649 6 8 5.3868 1.2219 -1.1599 7 6 3.4508 1.4346 -2.4443 8 6 2.1000 1.2209 -2.6334 9 7 1.8446 1.3919 -3.9401 10 6 0.5327 1.2643 -4.5795 11 7 3.0432 1.7073 -4.5896 12 6 4.0064 1.7356 -3.7091 13 17 5.6761 2.0825 -4.0340 14 6 4.2379 1.5352 1.2644 15 1 3.5708 1.3612 2.1087 16 6 4.9426 2.9117 1.3911 17 6 6.2403 2.6727 0.5799 18 7 6.6203 1.2797 0.8775 19 6 7.8841 0.7605 0.7872 20 1 8.0599 -0.2776 1.0277 21 6 8.9395 1.5684 0.3868 22 7 8.7252 2.8335 0.0935 23 14 10.6635 0.8601 0.2629 24 1 10.6374 -0.5752 0.6434 25 1 11.1546 0.9940 -1.1320 26 1 11.5690 1.5983 1.1796 27 6 5.4172 0.5400 1.2863 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.3803 0.9655 -1.8697 36 1 0.3829 0.2329 -4.8988 37 1 -0.2462 1.5415 -3.8692 38 1 0.4853 1.9235 -5.4463 39 1 4.3407 3.7016 0.9417 40 1 5.1693 3.1402 2.4326 41 1 7.0232 3.3573 0.9061 42 1 6.0509 2.7946 -0.4866 43 1 9.4625 3.3981 -0.1866 44 1 5.5498 0.1443 2.2933 45 1 5.2276 -0.2748 0.5876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691867372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 100.343700 kcal Electronic energy + Delta-G solvation = -29420.723338 eV Core-core repulsion = 25503.448035 eV Total energy + Delta-G solvation = -3917.275303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.69428 -40.96678 -37.87707 -37.74181 -37.20761 -34.58697 -34.19131 -33.05559 -31.69137 -30.64282 -28.89473 -27.92126 -26.80325 -26.34301 -23.98089 -22.72483 -22.49118 -21.75401 -21.67319 -19.94179 -18.72091 -18.13974 -17.79055 -16.89035 -16.84157 -16.49597 -16.22905 -16.01003 -15.73399 -15.53535 -15.00991 -14.41495 -14.19221 -14.15768 -14.11256 -13.69175 -13.56813 -13.51333 -13.21762 -12.92356 -12.89367 -12.82465 -12.64041 -12.56836 -12.45229 -12.29036 -11.96170 -11.93795 -11.76563 -11.71694 -11.59102 -11.45107 -11.23884 -10.65394 -10.43773 -10.24410 -9.67627 -9.25417 -8.53040 -7.57455 -4.94044 0.44163 0.45541 0.84421 1.42665 1.45838 1.54380 1.76400 2.23132 2.53661 2.59270 3.38272 3.49005 3.67809 3.87855 3.97467 3.98538 4.08817 4.18108 4.25791 4.33111 4.41638 4.44057 4.45368 4.48785 4.64070 4.72367 4.73760 4.80551 4.83737 4.95980 5.03328 5.14791 5.16673 5.26084 5.28641 5.37898 5.56651 5.58453 5.76577 5.96509 5.99071 6.12007 6.18924 6.52410 6.72608 7.31662 7.69066 8.04917 8.69145 9.43676 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.004783 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.133584 B = 5852.612937 C = 7454.503187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.085 3.915 4 N -0.602 5.602 5 C 0.546 3.454 6 O -0.497 6.497 7 C -0.293 4.293 8 C 0.108 3.892 9 N -0.340 5.340 10 C 0.080 3.920 11 N -0.310 5.310 12 C 0.143 3.857 13 Cl 0.004 6.996 14 C 0.155 3.845 15 H 0.134 0.866 16 C -0.146 4.146 17 C 0.163 3.837 18 N -0.592 5.592 19 C -0.208 4.208 20 H 0.066 0.934 21 C -0.071 4.071 22 N -0.945 5.945 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.303 1.303 26 H -0.289 1.289 27 C 0.138 3.862 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.006 0.994 43 H 0.236 0.764 44 H 0.026 0.974 45 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.050 -2.948 -3.207 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.036 4.036 4 N -0.337 5.337 5 C 0.333 3.667 6 O -0.370 6.370 7 C -0.309 4.309 8 C -0.043 4.043 9 N -0.121 5.121 10 C -0.057 4.057 11 N -0.137 5.137 12 C -0.048 4.048 13 Cl 0.032 6.968 14 C 0.052 3.948 15 H 0.151 0.849 16 C -0.186 4.186 17 C 0.039 3.961 18 N -0.316 5.316 19 C -0.339 4.339 20 H 0.084 0.916 21 C -0.263 4.263 22 N -0.597 5.597 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.231 1.231 26 H -0.217 1.217 27 C 0.011 3.989 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.156 0.844 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.024 0.976 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -28.490 -2.829 -4.599 28.998 hybrid contribution 2.259 -0.346 0.133 2.289 sum -26.231 -3.174 -4.466 26.798 Atomic orbital electron populations 1.21765 0.92281 1.03032 1.03503 1.22153 0.98098 0.96279 1.02771 1.22444 0.77869 0.97897 1.05414 1.47679 1.07182 1.74410 1.04393 1.17676 0.86919 0.78677 0.83383 1.91214 1.14179 1.44992 1.86591 1.20399 0.94602 1.21920 0.93964 1.24745 0.95783 0.96063 0.87754 1.48752 1.07734 1.49850 1.05739 1.22664 0.76150 1.05626 1.01304 1.77095 0.90878 1.25469 1.20234 1.22820 0.88567 1.01083 0.92370 1.98453 1.09453 1.92988 1.95881 1.21955 0.92609 0.94267 0.86000 0.84867 1.23342 0.97636 0.96891 1.00683 1.21719 0.93079 0.86117 0.95220 1.44343 1.02267 1.07571 1.77468 1.19302 0.84651 0.94181 1.35728 0.91649 1.25375 1.00963 0.96610 1.03355 1.70145 1.29252 1.05877 1.54403 0.85175 0.81187 0.77773 0.76349 1.19500 1.23107 1.21653 1.21516 0.87577 0.94203 0.95566 0.90780 0.91834 0.91027 0.92785 0.91442 0.87270 0.88723 0.73468 0.88140 0.84433 0.88224 0.90903 0.90688 0.93423 0.97643 0.95424 0.95596 0.97928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.77 71.98 0.70 -0.03 16 2 C -0.15 -1.93 5.25 30.59 0.16 -1.77 16 3 C 0.09 1.34 4.89 86.38 0.42 1.77 16 4 N -0.60 -17.74 2.51 -795.14 -2.00 -19.74 16 5 C 0.55 21.24 6.66 86.65 0.58 21.81 16 6 O -0.50 -25.70 9.44 -4.06 -0.04 -25.74 16 7 C -0.29 -9.60 5.90 -20.14 -0.12 -9.72 16 8 C 0.11 2.15 8.43 84.28 0.71 2.86 16 9 N -0.34 -6.61 3.98 -367.76 -1.46 -8.07 16 10 C 0.08 0.48 11.44 127.77 1.46 1.94 16 11 N -0.31 -9.48 12.50 -48.95 -0.61 -10.09 16 12 C 0.14 5.23 7.87 85.66 0.67 5.90 16 13 Cl 0.00 0.19 28.21 -2.72 -0.08 0.11 16 14 C 0.16 5.13 3.67 46.18 0.17 5.30 16 15 H 0.13 3.10 7.96 -2.38 -0.02 3.08 16 16 C -0.15 -5.66 6.69 31.98 0.21 -5.45 16 17 C 0.16 8.91 4.91 86.85 0.43 9.34 16 18 N -0.59 -33.45 2.23 -691.99 -1.55 -35.00 16 19 C -0.21 -13.03 10.27 84.03 0.86 -12.16 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.51 5.49 84.86 0.47 -4.05 16 22 N -0.94 -62.57 10.09 21.65 0.22 -62.35 16 23 Si 0.96 51.23 29.55 68.60 2.03 53.26 16 24 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 26 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 27 C 0.14 6.15 5.99 86.73 0.52 6.67 16 28 H 0.07 0.04 7.32 -2.39 -0.02 0.02 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 0.85 6.76 -2.39 -0.02 0.84 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.18 7.99 -2.39 -0.02 1.16 16 34 H 0.10 1.25 4.45 -2.39 -0.01 1.23 16 35 H 0.25 2.69 2.56 -2.91 -0.01 2.68 16 36 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.14 -0.32 8.14 -2.38 -0.02 -0.34 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 40 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.05 3.00 5.87 -2.39 -0.01 2.99 16 42 H 0.01 0.36 5.49 -2.39 -0.01 0.35 16 43 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.00 0.14 7.18 -2.39 -0.02 0.12 16 Total: -1.00 -93.44 362.08 4.78 -88.66 By element: Atomic # 1 Polarization: -4.47 SS G_CDS: 1.02 Total: -3.45 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 7.25 Total: 22.41 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.40 Total: -135.25 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.04 Total: -25.74 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.03 Total: 53.26 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -93.44 4.78 -88.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691867372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.008 kcal (2) G-P(sol) polarization free energy of solvation -93.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds