Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35459 * 126.43727 * 2 1 4 4 Cl 1.73605 * 127.23598 * 359.97438 * 3 2 1 5 5 C 1.41545 * 105.52572 * 179.97438 * 3 2 1 6 6 C 1.47659 * 126.46032 * 179.97438 * 5 3 2 7 7 O 1.21579 * 120.00329 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00026 * 180.02562 * 6 5 3 9 9 C 1.46497 * 120.00491 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47497 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47385 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.78144 * 308.24779 * 11 10 9 13 13 C 1.55157 * 110.72400 * 184.99984 * 11 10 9 14 14 C 1.54905 * 101.61697 * 206.15900 * 13 11 10 15 15 N 1.47422 * 104.83376 * 36.99215 * 14 13 11 16 16 C 1.36939 * 125.64755 * 155.91226 * 15 14 13 17 17 H 1.08004 * 119.99658 * 341.70576 * 16 15 14 18 18 C 1.38812 * 120.00133 * 161.71674 * 16 15 14 19 19 N 1.31615 * 120.00148 * 156.12307 * 18 16 15 20 20 Si 1.86794 * 119.99798 * 336.12088 * 18 16 15 21 21 H 1.48504 * 109.47558 * 84.65224 * 20 18 16 22 22 H 1.48500 * 109.47341 * 204.65539 * 20 18 16 23 23 H 1.48504 * 109.47264 * 324.65425 * 20 18 16 24 24 C 1.47016 * 108.70355 * 335.86718 * 15 14 13 25 25 N 1.31828 * 107.07628 * 0.24088 * 5 3 2 26 26 N 1.28471 * 110.13497 * 359.59261 * 25 5 3 27 27 C 1.46500 * 124.93457 * 180.14357 * 26 25 5 28 28 H 1.08998 * 109.47356 * 90.02498 * 1 2 3 29 29 H 1.09004 * 109.47430 * 210.02669 * 1 2 3 30 30 H 1.08998 * 109.46772 * 330.02439 * 1 2 3 31 31 H 0.97003 * 119.99722 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47066 * 59.99860 * 9 8 6 33 33 H 1.09001 * 109.46770 * 300.00369 * 9 8 6 34 34 H 1.09004 * 109.46796 * 60.00039 * 10 9 8 35 35 H 1.09001 * 109.47692 * 300.00148 * 10 9 8 36 36 H 1.08999 * 110.99902 * 88.06306 * 13 11 10 37 37 H 1.09003 * 110.99978 * 324.25239 * 13 11 10 38 38 H 1.09003 * 110.36709 * 155.83142 * 14 13 11 39 39 H 1.09002 * 110.36463 * 278.04167 * 14 13 11 40 40 H 0.97003 * 120.00121 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88051 * 120.47506 * 24 15 14 42 42 H 1.08992 * 109.88616 * 241.64367 * 24 15 14 43 43 H 1.08995 * 109.47588 * 270.31366 * 27 26 25 44 44 H 1.09002 * 109.46879 * 30.31493 * 27 26 25 45 45 H 1.09002 * 109.47147 * 150.31183 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0898 0.0000 4 17 1.8235 2.7558 -0.0006 5 6 3.6338 0.5846 0.0006 6 6 4.8774 1.3807 0.0003 7 8 4.8217 2.5952 -0.0001 8 7 6.0742 0.7611 0.0005 9 6 7.3081 1.5509 0.0007 10 6 8.5153 0.6110 0.0015 11 6 9.8039 1.4359 0.0011 12 1 9.7896 2.1752 -0.7996 13 6 11.0458 0.5143 -0.1246 14 6 12.1407 1.3714 0.5580 15 7 11.4530 2.0411 1.6768 16 6 12.0523 2.5143 2.8135 17 1 13.0357 2.1646 3.0911 18 6 11.3958 3.4433 3.6091 19 7 11.7054 3.5541 4.8835 20 14 10.0729 4.5361 2.8709 21 1 8.7748 3.8148 2.8766 22 1 9.9521 5.7790 3.6746 23 1 10.4399 4.8834 1.4745 24 6 10.0173 2.1178 1.3696 25 7 3.5456 -0.7307 -0.0044 26 7 2.3126 -1.0913 0.0006 27 6 1.8445 -2.4796 0.0003 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 6.1187 -0.2079 0.0011 32 1 7.3369 2.1795 0.8908 33 1 7.3371 2.1796 -0.8892 34 1 8.4867 -0.0179 -0.8884 35 1 8.4861 -0.0174 0.8916 36 1 11.2902 0.3287 -1.1705 37 1 10.8926 -0.4227 0.4109 38 1 12.9426 0.7348 0.9321 39 1 12.5369 2.1077 -0.1414 40 1 11.2469 4.2035 5.4394 41 1 9.4457 1.5951 2.1365 42 1 9.7045 3.1605 1.3173 43 1 1.7290 -2.8239 -1.0273 44 1 2.5714 -3.1082 0.5147 45 1 0.8847 -2.5395 0.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691913056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = 61.935916 kcal Electronic energy + Delta-G solvation = -26839.788267 eV Core-core repulsion = 22920.847478 eV Total energy + Delta-G solvation = -3918.940789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.13832 -39.45869 -38.08699 -36.72566 -35.21249 -34.07562 -32.99549 -32.84209 -31.35232 -29.32367 -28.18934 -27.63915 -26.77511 -24.65408 -23.44256 -22.14681 -21.43125 -20.32707 -20.18151 -19.49625 -17.72805 -17.00971 -16.92366 -16.82360 -16.08857 -15.69920 -15.22034 -15.18105 -14.46383 -14.22211 -13.95978 -13.83934 -13.72864 -13.42854 -13.34815 -13.12657 -12.91374 -12.79343 -12.59186 -12.32582 -12.08440 -11.97703 -11.75048 -11.50157 -11.28725 -11.02234 -10.89916 -10.74938 -10.46168 -10.41488 -10.08205 -9.99551 -9.73543 -9.58434 -9.22857 -9.08651 -8.97092 -8.52772 -6.97468 -5.88270 -3.16183 1.16909 1.48614 1.56945 2.33337 3.06617 3.24723 3.46053 3.58332 3.60619 3.91352 4.03459 4.37156 4.45055 4.51158 4.63617 4.76182 4.85989 4.93950 4.94749 5.01726 5.06196 5.18978 5.27852 5.29006 5.46121 5.50226 5.59075 5.62297 5.79940 5.87591 6.00091 6.13554 6.16353 6.21234 6.22818 6.41188 6.43529 6.55909 6.69335 6.87397 6.87675 7.25133 7.54697 7.80501 8.16127 8.38154 8.91584 9.77235 10.27054 11.28225 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002528 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.319004 B =11073.721337 C =12028.484422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.024 3.976 3 C -0.104 4.104 4 Cl -0.006 7.006 5 C 0.005 3.995 6 C 0.596 3.404 7 O -0.514 6.514 8 N -0.714 5.714 9 C 0.115 3.885 10 C -0.116 4.116 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.125 4.125 14 C 0.131 3.869 15 N -0.611 5.611 16 C -0.243 4.243 17 H 0.092 0.908 18 C 0.021 3.979 19 N -0.908 5.908 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.280 1.280 24 C 0.124 3.876 25 N -0.248 5.248 26 N -0.278 5.278 27 C 0.086 3.914 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.407 -14.950 -14.304 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.141 4.141 4 Cl 0.022 6.978 5 C -0.157 4.157 6 C 0.379 3.621 7 O -0.387 6.387 8 N -0.366 5.366 9 C -0.008 4.008 10 C -0.155 4.155 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.163 4.163 14 C 0.006 3.994 15 N -0.338 5.338 16 C -0.370 4.370 17 H 0.109 0.891 18 C -0.177 4.177 19 N -0.552 5.552 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.233 1.233 23 H -0.206 1.206 24 C -0.001 4.001 25 N -0.083 5.083 26 N -0.067 5.067 27 C -0.054 4.054 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.240 0.760 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.818 -14.891 -14.059 32.177 hybrid contribution -1.252 1.049 -0.281 1.658 sum -26.071 -13.842 -14.339 32.816 Atomic orbital electron populations 1.20416 0.85707 1.04406 1.03814 1.21116 0.95480 0.85709 1.07764 1.20533 0.92030 0.87927 1.13627 1.98367 1.90776 1.11556 1.97066 1.21871 0.94346 0.89423 1.10012 1.16768 0.81530 0.86506 0.77285 1.90869 1.86418 1.12399 1.48996 1.45847 1.05307 1.10811 1.74652 1.21561 0.81764 0.94310 1.03155 1.21772 0.92992 0.97960 1.02729 1.22120 0.93443 0.97503 0.98754 0.90474 1.22777 0.95398 0.98309 0.99802 1.21610 0.94228 0.93931 0.89643 1.44800 1.01229 1.69346 1.18412 1.18649 1.03287 1.19060 0.95960 0.89081 1.24953 0.98441 0.98881 0.95442 1.69862 1.44562 1.36850 1.03925 0.86932 0.82144 0.80793 0.78390 1.21141 1.23263 1.20631 1.21745 0.87383 0.97359 0.93617 1.73608 1.01920 1.13712 1.19100 1.45275 1.02594 1.07462 1.51392 1.22254 1.01950 0.76314 1.04837 0.89741 0.90575 0.89148 0.76045 0.90669 0.91077 0.91235 0.90754 0.91633 0.91270 0.93448 0.95918 0.92766 0.94187 0.95801 0.89281 0.87978 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.99 36.01 0.36 -0.02 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.27 6.79 -39.31 -0.27 -1.53 16 4 Cl -0.01 -0.08 27.92 -51.86 -1.45 -1.53 16 5 C 0.00 0.06 7.13 -82.76 -0.59 -0.53 16 6 C 0.60 9.28 7.82 -12.41 -0.10 9.18 16 7 O -0.51 -9.65 15.87 5.30 0.08 -9.57 16 8 N -0.71 -9.66 5.55 -61.31 -0.34 -10.00 16 9 C 0.11 1.70 5.56 -4.05 -0.02 1.67 16 10 C -0.12 -1.56 4.73 -26.73 -0.13 -1.68 16 11 C -0.10 -1.64 2.93 -88.76 -0.26 -1.90 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.95 6.53 -24.58 -0.16 -2.11 16 14 C 0.13 2.63 7.23 -2.53 -0.02 2.61 16 15 N -0.61 -15.32 3.20 -170.05 -0.54 -15.87 16 16 C -0.24 -7.14 10.56 -15.06 -0.16 -7.29 16 17 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 18 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 19 N -0.91 -28.97 13.97 55.49 0.78 -28.20 16 20 Si 0.89 24.13 24.40 -169.99 -4.15 19.98 16 21 H -0.28 -7.55 6.83 56.52 0.39 -7.17 16 22 H -0.30 -8.37 7.11 56.52 0.40 -7.96 16 23 H -0.28 -7.53 6.90 56.52 0.39 -7.14 16 24 C 0.12 2.78 4.18 -3.04 -0.01 2.77 16 25 N -0.25 -2.76 11.66 33.42 0.39 -2.37 16 26 N -0.28 -2.27 3.72 -63.68 -0.24 -2.50 16 27 C 0.09 0.24 11.12 59.85 0.67 0.91 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.15 7.03 -51.93 -0.36 -0.22 16 30 H 0.09 0.42 8.03 -51.93 -0.42 0.00 16 31 H 0.40 4.51 8.19 -40.82 -0.33 4.18 16 32 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 41 H 0.04 0.94 7.68 -51.93 -0.40 0.54 16 42 H 0.02 0.60 3.53 -51.93 -0.18 0.42 16 43 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.03 6.98 -51.93 -0.36 -0.33 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -37.72 378.85 -7.79 -45.52 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.68 Total: -3.45 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.35 Total: 2.28 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.04 Total: -58.94 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.15 Total: 19.98 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.45 Total: -1.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.72 -7.79 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.451 kcal (2) G-P(sol) polarization free energy of solvation -37.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds