Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35459 * 126.43727 * 2 1 4 4 Cl 1.73605 * 127.23598 * 359.97438 * 3 2 1 5 5 C 1.41545 * 105.52572 * 179.97438 * 3 2 1 6 6 C 1.47659 * 126.46032 * 179.97438 * 5 3 2 7 7 O 1.21579 * 120.00329 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00026 * 180.02562 * 6 5 3 9 9 C 1.46497 * 120.00491 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47497 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47385 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.78144 * 308.24779 * 11 10 9 13 13 C 1.55157 * 110.72400 * 184.99984 * 11 10 9 14 14 C 1.54905 * 101.61697 * 206.15900 * 13 11 10 15 15 N 1.47422 * 104.83376 * 36.99215 * 14 13 11 16 16 C 1.36939 * 125.64755 * 155.91226 * 15 14 13 17 17 H 1.08004 * 119.99658 * 341.70576 * 16 15 14 18 18 C 1.38812 * 120.00133 * 161.71674 * 16 15 14 19 19 N 1.31615 * 120.00148 * 156.12307 * 18 16 15 20 20 Si 1.86794 * 119.99798 * 336.12088 * 18 16 15 21 21 H 1.48504 * 109.47558 * 84.65224 * 20 18 16 22 22 H 1.48500 * 109.47341 * 204.65539 * 20 18 16 23 23 H 1.48504 * 109.47264 * 324.65425 * 20 18 16 24 24 C 1.47016 * 108.70355 * 335.86718 * 15 14 13 25 25 N 1.31828 * 107.07628 * 0.24088 * 5 3 2 26 26 N 1.28471 * 110.13497 * 359.59261 * 25 5 3 27 27 C 1.46500 * 124.93457 * 180.14357 * 26 25 5 28 28 H 1.08998 * 109.47356 * 90.02498 * 1 2 3 29 29 H 1.09004 * 109.47430 * 210.02669 * 1 2 3 30 30 H 1.08998 * 109.46772 * 330.02439 * 1 2 3 31 31 H 0.97003 * 119.99722 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47066 * 59.99860 * 9 8 6 33 33 H 1.09001 * 109.46770 * 300.00369 * 9 8 6 34 34 H 1.09004 * 109.46796 * 60.00039 * 10 9 8 35 35 H 1.09001 * 109.47692 * 300.00148 * 10 9 8 36 36 H 1.08999 * 110.99902 * 88.06306 * 13 11 10 37 37 H 1.09003 * 110.99978 * 324.25239 * 13 11 10 38 38 H 1.09003 * 110.36709 * 155.83142 * 14 13 11 39 39 H 1.09002 * 110.36463 * 278.04167 * 14 13 11 40 40 H 0.97003 * 120.00121 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88051 * 120.47506 * 24 15 14 42 42 H 1.08992 * 109.88616 * 241.64367 * 24 15 14 43 43 H 1.08995 * 109.47588 * 270.31366 * 27 26 25 44 44 H 1.09002 * 109.46879 * 30.31493 * 27 26 25 45 45 H 1.09002 * 109.47147 * 150.31183 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0898 0.0000 4 17 1.8235 2.7558 -0.0006 5 6 3.6338 0.5846 0.0006 6 6 4.8774 1.3807 0.0003 7 8 4.8217 2.5952 -0.0001 8 7 6.0742 0.7611 0.0005 9 6 7.3081 1.5509 0.0007 10 6 8.5153 0.6110 0.0015 11 6 9.8039 1.4359 0.0011 12 1 9.7896 2.1752 -0.7996 13 6 11.0458 0.5143 -0.1246 14 6 12.1407 1.3714 0.5580 15 7 11.4530 2.0411 1.6768 16 6 12.0523 2.5143 2.8135 17 1 13.0357 2.1646 3.0911 18 6 11.3958 3.4433 3.6091 19 7 11.7054 3.5541 4.8835 20 14 10.0729 4.5361 2.8709 21 1 8.7748 3.8148 2.8766 22 1 9.9521 5.7790 3.6746 23 1 10.4399 4.8834 1.4745 24 6 10.0173 2.1178 1.3696 25 7 3.5456 -0.7307 -0.0044 26 7 2.3126 -1.0913 0.0006 27 6 1.8445 -2.4796 0.0003 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 6.1187 -0.2079 0.0011 32 1 7.3369 2.1795 0.8908 33 1 7.3371 2.1796 -0.8892 34 1 8.4867 -0.0179 -0.8884 35 1 8.4861 -0.0174 0.8916 36 1 11.2902 0.3287 -1.1705 37 1 10.8926 -0.4227 0.4109 38 1 12.9426 0.7348 0.9321 39 1 12.5369 2.1077 -0.1414 40 1 11.2469 4.2035 5.4394 41 1 9.4457 1.5951 2.1365 42 1 9.7045 3.1605 1.3173 43 1 1.7290 -2.8239 -1.0273 44 1 2.5714 -3.1082 0.5147 45 1 0.8847 -2.5395 0.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691913056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = 33.782831 kcal Electronic energy + Delta-G solvation = -26841.009077 eV Core-core repulsion = 22920.847478 eV Total energy + Delta-G solvation = -3920.161598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.86667 -40.63796 -39.63591 -37.59078 -36.53871 -34.91967 -34.57955 -33.54520 -33.04964 -30.94152 -29.17013 -28.36830 -27.79364 -26.36914 -24.60867 -23.39490 -22.23129 -21.88960 -21.49439 -20.62940 -19.02004 -18.50920 -17.80210 -17.68563 -17.65021 -16.87182 -16.58479 -16.12025 -15.84364 -15.45731 -15.23670 -15.05261 -14.79540 -14.48933 -14.20591 -14.18753 -13.96565 -13.75120 -13.60229 -13.51077 -13.17912 -13.12071 -12.92765 -12.85156 -12.74611 -12.53529 -12.41309 -12.18450 -11.90417 -11.79853 -11.73828 -11.46463 -11.17130 -11.15419 -10.77155 -10.39662 -10.09930 -9.80421 -9.07909 -8.24059 -5.46118 0.29603 0.71988 0.89541 1.25451 1.31549 1.40175 1.61732 2.05533 2.16306 2.35403 2.98945 3.21675 3.36597 3.48814 3.63077 3.74559 3.82600 3.99409 4.04767 4.19019 4.25143 4.30535 4.36385 4.49143 4.55470 4.59673 4.62839 4.68160 4.73119 4.76226 4.82528 4.85874 4.99447 5.03457 5.05794 5.12632 5.19389 5.27926 5.31087 5.51117 5.62638 5.67970 6.06319 6.32295 6.65875 6.75329 7.06692 7.52587 8.10297 8.96425 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002528 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.319004 B =11073.721337 C =12028.484422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.043 3.957 3 C -0.138 4.138 4 Cl -0.023 7.023 5 C -0.029 4.029 6 C 0.590 3.410 7 O -0.558 6.558 8 N -0.702 5.702 9 C 0.118 3.882 10 C -0.102 4.102 11 C -0.089 4.089 12 H 0.089 0.911 13 C -0.106 4.106 14 C 0.119 3.881 15 N -0.632 5.632 16 C -0.231 4.231 17 H 0.065 0.935 18 C -0.034 4.034 19 N -0.952 5.952 20 Si 0.944 3.056 21 H -0.282 1.282 22 H -0.309 1.309 23 H -0.275 1.275 24 C 0.116 3.884 25 N -0.250 5.250 26 N -0.266 5.266 27 C 0.071 3.929 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.418 0.582 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.022 0.978 42 H 0.002 0.998 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.741 -18.155 -17.023 37.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.176 4.176 4 Cl 0.006 6.994 5 C -0.188 4.188 6 C 0.375 3.625 7 O -0.435 6.435 8 N -0.354 5.354 9 C -0.005 4.005 10 C -0.140 4.140 11 C -0.108 4.108 12 H 0.108 0.892 13 C -0.143 4.143 14 C -0.005 4.005 15 N -0.358 5.358 16 C -0.360 4.360 17 H 0.083 0.917 18 C -0.229 4.229 19 N -0.599 5.599 20 Si 0.776 3.224 21 H -0.210 1.210 22 H -0.238 1.238 23 H -0.202 1.202 24 C -0.009 4.009 25 N -0.087 5.087 26 N -0.056 5.056 27 C -0.066 4.066 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.255 0.745 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.020 0.980 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -27.147 -18.167 -16.828 36.745 hybrid contribution -0.523 1.863 0.552 2.012 sum -27.670 -16.304 -16.276 36.005 Atomic orbital electron populations 1.20638 0.82486 1.05883 1.05365 1.21676 0.97125 0.84651 1.04877 1.20806 0.92452 0.88155 1.16173 1.98347 1.90757 1.13046 1.97277 1.21606 0.93873 0.90411 1.12907 1.17160 0.82624 0.86298 0.76406 1.90828 1.87182 1.14296 1.51150 1.45710 1.04518 1.11337 1.73868 1.21435 0.83025 0.94624 1.01454 1.21682 0.90292 0.97282 1.04752 1.22109 0.95592 0.98029 0.95090 0.89237 1.22742 0.92395 0.97237 1.01975 1.21923 0.95723 0.94411 0.88487 1.45013 1.03014 1.69124 1.18683 1.18677 1.02192 1.17863 0.97227 0.91684 1.25493 1.01088 1.00550 0.95731 1.69959 1.46757 1.38132 1.05094 0.85981 0.80083 0.78865 0.77509 1.20961 1.23819 1.20176 1.21866 0.85529 0.96577 0.96897 1.73541 1.03641 1.12411 1.19121 1.45875 1.01641 1.09210 1.48889 1.22813 1.03525 0.73412 1.06868 0.87977 0.87252 0.89519 0.74517 0.94417 0.90931 0.86995 0.90796 0.87199 0.90292 0.93466 0.95211 0.92915 0.95962 0.98027 0.87160 0.87345 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.99 71.24 0.71 0.25 16 2 C 0.04 0.64 6.94 41.33 0.29 0.93 16 3 C -0.14 -3.32 6.79 22.44 0.15 -3.16 16 4 Cl -0.02 -0.58 27.92 -2.72 -0.08 -0.66 16 5 C -0.03 -0.76 7.13 42.45 0.30 -0.46 16 6 C 0.59 18.69 7.82 86.73 0.68 19.37 16 7 O -0.56 -21.87 15.87 -3.96 -0.06 -21.93 16 8 N -0.70 -18.52 5.55 -466.16 -2.59 -21.11 16 9 C 0.12 3.39 5.56 86.38 0.48 3.87 16 10 C -0.10 -2.42 4.73 30.59 0.14 -2.28 16 11 C -0.09 -2.69 2.93 -9.59 -0.03 -2.71 16 12 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 13 C -0.11 -2.85 6.53 31.98 0.21 -2.65 16 14 C 0.12 4.52 7.23 86.85 0.63 5.14 16 15 N -0.63 -31.60 3.20 -691.91 -2.22 -33.81 16 16 C -0.23 -13.91 10.56 84.03 0.89 -13.03 16 17 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 18 C -0.03 -2.12 5.43 84.86 0.46 -1.66 16 19 N -0.95 -62.96 13.97 21.65 0.30 -62.66 16 20 Si 0.94 51.88 24.40 68.60 1.67 53.55 16 21 H -0.28 -15.22 6.83 99.48 0.68 -14.54 16 22 H -0.31 -17.04 7.11 99.48 0.71 -16.33 16 23 H -0.28 -14.70 6.90 99.48 0.69 -14.02 16 24 C 0.12 5.16 4.18 86.75 0.36 5.52 16 25 N -0.25 -5.15 11.66 -48.18 -0.56 -5.71 16 26 N -0.27 -3.58 3.72 -355.38 -1.32 -4.90 16 27 C 0.07 0.10 11.12 127.77 1.42 1.52 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 -0.12 7.03 -2.38 -0.02 -0.14 16 30 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16 31 H 0.42 8.61 8.19 -92.71 -0.76 7.85 16 32 H 0.04 1.37 7.69 -2.38 -0.02 1.35 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.07 1.80 7.94 -2.39 -0.02 1.79 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 41 H 0.02 1.06 7.68 -2.39 -0.02 1.04 16 42 H 0.00 0.11 3.53 -2.39 -0.01 0.10 16 43 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.13 -0.62 6.98 -2.39 -0.02 -0.63 16 Total: -1.00 -88.29 378.85 2.06 -86.24 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 0.21 Total: 0.33 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.70 Total: 10.66 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.39 Total: -128.19 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.67 Total: 53.55 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -88.29 2.06 -86.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.020 kcal (2) G-P(sol) polarization free energy of solvation -88.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds