Wall clock time and date at job start Sat Apr 11 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34236 * 126.28008 * 2 1 4 4 H 0.97000 * 125.73713 * 0.02562 * 3 2 1 5 5 N 1.39929 * 108.52200 * 180.02562 * 3 2 1 6 6 C 1.30533 * 108.89720 * 359.75273 * 5 3 2 7 7 Cl 1.73590 * 126.00807 * 180.26121 * 6 5 3 8 8 C 1.38070 * 126.28177 * 180.02562 * 2 1 3 9 9 C 1.47383 * 126.41830 * 359.95238 * 8 2 1 10 10 O 1.21601 * 120.00194 * 89.99885 * 9 8 2 11 11 N 1.34776 * 119.99846 * 269.99055 * 9 8 2 12 12 C 1.46925 * 120.63182 * 3.90904 * 11 9 8 13 13 C 1.53191 * 108.77490 * 126.40979 * 12 11 9 14 14 C 1.53043 * 109.31251 * 54.63865 * 13 12 11 15 15 C 1.53042 * 109.53463 * 298.63584 * 14 13 12 16 16 H 1.08994 * 109.50102 * 301.40791 * 15 14 13 17 17 C 1.53003 * 109.49413 * 181.31551 * 15 14 13 18 18 C 1.46924 * 120.63352 * 183.93415 * 11 9 8 19 19 H 1.09001 * 109.58930 * 113.79556 * 18 11 9 20 20 C 1.52999 * 109.70081 * 353.44484 * 18 11 9 21 21 N 1.46501 * 109.47254 * 298.25537 * 20 18 11 22 22 C 1.36942 * 120.00167 * 185.10230 * 21 20 18 23 23 H 1.07999 * 119.99921 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00057 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99976 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99860 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47128 * 59.99841 * 26 24 22 28 28 H 1.48502 * 109.46736 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47110 * 299.99757 * 26 24 22 30 30 H 1.08998 * 109.47131 * 269.97895 * 1 2 3 31 31 H 1.09005 * 109.46668 * 29.97782 * 1 2 3 32 32 H 1.08996 * 109.47105 * 149.97566 * 1 2 3 33 33 H 1.09009 * 109.58582 * 6.62724 * 12 11 9 34 34 H 1.09001 * 109.59132 * 246.20012 * 12 11 9 35 35 H 1.09004 * 109.49878 * 294.68828 * 13 12 11 36 36 H 1.09000 * 109.49872 * 174.58903 * 13 12 11 37 37 H 1.09000 * 109.45800 * 58.65504 * 14 13 12 38 38 H 1.08993 * 109.45993 * 178.61458 * 14 13 12 39 39 H 1.09002 * 109.47536 * 59.99451 * 17 15 14 40 40 H 1.09002 * 109.47318 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.47411 * 299.99937 * 17 15 14 42 42 H 1.09004 * 109.47524 * 58.25406 * 20 18 11 43 43 H 1.09006 * 109.47106 * 178.25650 * 20 18 11 44 44 H 0.96997 * 120.00022 * 5.09613 * 21 20 18 45 45 H 0.96993 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6553 -0.0006 6 6 3.6599 -0.6497 0.0044 7 17 5.0841 -1.6421 0.0122 8 6 2.3241 -1.1130 -0.0005 9 6 1.8858 -2.5202 -0.0001 10 8 1.7042 -3.1007 -1.0531 11 7 1.6864 -3.1635 1.1672 12 6 1.8187 -2.4524 2.4461 13 6 0.5367 -2.6575 3.2593 14 6 0.2606 -4.1563 3.3993 15 6 0.0566 -4.7708 2.0125 16 1 -0.7746 -4.2733 1.5128 17 6 -0.2518 -6.2626 2.1554 18 6 1.3331 -4.5895 1.1853 19 1 2.1446 -5.1614 1.6353 20 6 1.0918 -5.0793 -0.2440 21 7 -0.0319 -4.3437 -0.8291 22 6 -0.5011 -4.6837 -2.0699 23 1 -0.0425 -5.4939 -2.6173 24 6 -1.5655 -3.9863 -2.6246 25 7 -2.1241 -2.9986 -1.9577 26 14 -2.2050 -4.4498 -4.3174 27 1 -2.6692 -5.8602 -4.3021 28 1 -3.3378 -3.5602 -4.6791 29 1 -1.1168 -4.2975 -5.3164 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9664 -1.3886 2.2591 34 1 2.6697 -2.8499 2.9990 35 1 -0.2990 -2.1799 2.7478 36 1 0.6587 -2.2162 4.2484 37 1 1.1074 -4.6374 3.8886 38 1 -0.6376 -4.3057 3.9983 39 1 -1.1585 -6.3913 2.7467 40 1 -0.3966 -6.7000 1.1676 41 1 0.5804 -6.7596 2.6540 42 1 1.9874 -4.9105 -0.8420 43 1 0.8604 -6.1444 -0.2289 44 1 -0.4436 -3.6158 -0.3377 45 1 -2.8676 -2.5111 -2.3454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698947342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:33 Heat of formation + Delta-G solvation = 79.192122 kcal Electronic energy + Delta-G solvation = -29888.167962 eV Core-core repulsion = 25969.975458 eV Total energy + Delta-G solvation = -3918.192504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.43394 -39.82791 -36.92982 -36.72592 -34.61095 -33.08698 -32.50314 -31.97384 -31.01201 -29.93980 -27.59618 -26.65319 -25.75855 -23.93896 -22.56500 -21.88264 -21.82903 -20.98209 -19.60098 -18.34204 -17.35676 -16.95851 -16.02359 -15.60901 -15.14690 -14.92927 -14.78393 -14.34652 -14.19764 -14.12842 -13.46418 -13.33599 -13.22842 -12.93640 -12.73869 -12.65553 -12.23846 -12.09454 -12.00774 -11.84250 -11.82519 -11.57745 -11.46842 -11.30829 -10.93930 -10.66945 -10.62821 -10.59552 -10.46040 -10.30281 -10.02486 -9.74781 -9.45069 -9.36907 -8.75873 -8.61174 -8.17422 -7.91490 -6.46078 -5.53816 -2.71165 1.53762 1.65756 2.35703 2.97821 3.32731 3.57663 3.60251 3.62145 3.63419 4.71408 4.80598 4.91309 4.99223 5.04528 5.08856 5.22069 5.30725 5.43991 5.53802 5.64873 5.65416 5.74661 5.83587 5.88231 5.90324 5.94021 5.99393 6.00932 6.03537 6.12747 6.18853 6.34229 6.40064 6.43537 6.54838 6.63199 6.79560 6.93202 7.07155 7.09305 7.36852 7.37222 7.91738 8.06960 8.66672 9.05400 9.78483 10.38829 10.74654 11.70830 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.005659 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.099640 B = 4946.947228 C = 6218.592533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 N -0.454 5.454 4 H 0.444 0.556 5 N -0.288 5.288 6 C 0.155 3.845 7 Cl 0.011 6.989 8 C -0.249 4.249 9 C 0.561 3.439 10 O -0.437 6.437 11 N -0.605 5.605 12 C 0.118 3.882 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.101 4.101 16 H 0.089 0.911 17 C -0.140 4.140 18 C 0.150 3.850 19 H 0.064 0.936 20 C 0.155 3.845 21 N -0.695 5.695 22 C -0.200 4.200 23 H 0.063 0.937 24 C -0.022 4.022 25 N -0.942 5.942 26 Si 0.898 3.102 27 H -0.291 1.291 28 H -0.295 1.295 29 H -0.291 1.291 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.017 0.983 44 H 0.380 0.620 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 5.574 13.742 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.012 3.988 3 N -0.164 5.164 4 H 0.290 0.710 5 N -0.114 5.114 6 C -0.037 4.037 7 Cl 0.039 6.961 8 C -0.265 4.265 9 C 0.344 3.656 10 O -0.305 6.305 11 N -0.342 5.342 12 C -0.006 4.006 13 C -0.173 4.173 14 C -0.150 4.150 15 C -0.121 4.121 16 H 0.107 0.893 17 C -0.198 4.198 18 C 0.047 3.953 19 H 0.082 0.918 20 C 0.028 3.972 21 N -0.339 5.339 22 C -0.332 4.332 23 H 0.081 0.919 24 C -0.216 4.216 25 N -0.594 5.594 26 Si 0.732 3.268 27 H -0.218 1.218 28 H -0.222 1.222 29 H -0.218 1.218 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.214 0.786 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.815 6.081 12.932 16.790 hybrid contribution -0.911 0.003 -0.773 1.195 sum 7.904 6.084 12.159 15.727 Atomic orbital electron populations 1.20726 0.85048 1.06552 1.03909 1.21618 0.95149 0.85747 0.96254 1.45810 1.02977 1.08559 1.59017 0.71025 1.77034 0.96897 1.10814 1.26683 1.22516 0.88649 0.90384 1.02127 1.98393 1.35680 1.65177 1.96835 1.20023 0.90450 0.95446 1.20552 1.17081 0.80096 0.84248 0.84204 1.91159 1.43756 1.64745 1.30796 1.47762 1.71343 1.10069 1.05045 1.21485 0.97065 0.97149 0.84882 1.21923 0.98436 0.97337 0.99597 1.21579 1.01124 0.94943 0.97311 1.21501 0.99086 0.96700 0.94803 0.89255 1.21748 1.00319 0.95301 1.02431 1.21513 0.95227 0.80192 0.98411 0.91844 1.21013 0.93659 0.93495 0.89065 1.42200 1.34503 1.39012 1.18141 1.19133 1.09127 1.11340 0.93573 0.91911 1.24500 0.99878 0.99114 0.98098 1.69597 1.27082 1.24827 1.37885 0.86366 0.77948 0.77121 0.85414 1.21841 1.22156 1.21847 0.89741 0.90654 0.86339 0.90742 0.92353 0.91259 0.91586 0.92430 0.92177 0.93131 0.91374 0.93555 0.93933 0.96517 0.78588 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.25 36.01 0.37 -1.05 16 2 C 0.14 2.08 7.05 -81.60 -0.58 1.50 16 3 N -0.45 -5.60 7.28 33.86 0.25 -5.36 16 4 H 0.44 3.71 8.96 -182.73 -1.64 2.07 16 5 N -0.29 -4.30 12.64 33.17 0.42 -3.88 16 6 C 0.16 2.49 7.89 -16.90 -0.13 2.36 16 7 Cl 0.01 0.17 29.19 -51.86 -1.51 -1.35 16 8 C -0.25 -4.21 3.95 -105.04 -0.42 -4.63 16 9 C 0.56 10.71 6.33 -12.54 -0.08 10.63 16 10 O -0.44 -10.50 11.05 5.28 0.06 -10.44 16 11 N -0.61 -9.77 2.88 -166.50 -0.48 -10.25 16 12 C 0.12 1.49 6.32 -3.71 -0.02 1.47 16 13 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 14 C -0.11 -1.33 5.17 -26.69 -0.14 -1.47 16 15 C -0.10 -1.54 2.22 -90.50 -0.20 -1.74 16 16 H 0.09 1.68 6.70 -51.93 -0.35 1.34 16 17 C -0.14 -1.97 8.96 37.16 0.33 -1.64 16 18 C 0.15 2.48 2.62 -67.60 -0.18 2.30 16 19 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 20 C 0.16 3.26 4.76 -4.04 -0.02 3.24 16 21 N -0.69 -17.39 2.84 -59.90 -0.17 -17.56 16 22 C -0.20 -5.69 9.75 -15.06 -0.15 -5.83 16 23 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 25 N -0.94 -27.74 13.06 55.49 0.72 -27.01 16 26 Si 0.90 23.27 29.55 -169.99 -5.02 18.24 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 29 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.12 2.24 7.96 -51.93 -0.41 1.82 16 33 H 0.07 0.94 6.18 -51.92 -0.32 0.62 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 1.00 6.27 -51.93 -0.33 0.68 16 43 H 0.02 0.36 6.72 -51.93 -0.35 0.01 16 44 H 0.38 9.83 5.80 -40.82 -0.24 9.60 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -33.15 369.46 -9.38 -42.53 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.75 Total: 6.79 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.46 Total: 2.71 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.74 Total: -64.06 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.51 Total: -1.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.15 -9.38 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698947342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.725 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds