Wall clock time and date at job start Sat Apr 11 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34236 * 126.28008 * 2 1 4 4 H 0.97000 * 125.73713 * 0.02562 * 3 2 1 5 5 N 1.39929 * 108.52200 * 180.02562 * 3 2 1 6 6 C 1.30533 * 108.89720 * 359.75273 * 5 3 2 7 7 Cl 1.73590 * 126.00807 * 180.26121 * 6 5 3 8 8 C 1.38070 * 126.28177 * 180.02562 * 2 1 3 9 9 C 1.47383 * 126.41830 * 359.95238 * 8 2 1 10 10 O 1.21601 * 120.00194 * 89.99885 * 9 8 2 11 11 N 1.34776 * 119.99846 * 269.99055 * 9 8 2 12 12 C 1.46925 * 120.63182 * 3.90904 * 11 9 8 13 13 C 1.53191 * 108.77490 * 126.40979 * 12 11 9 14 14 C 1.53043 * 109.31251 * 54.63865 * 13 12 11 15 15 C 1.53042 * 109.53463 * 298.63584 * 14 13 12 16 16 H 1.08994 * 109.50102 * 301.40791 * 15 14 13 17 17 C 1.53003 * 109.49413 * 181.31551 * 15 14 13 18 18 C 1.46924 * 120.63352 * 183.93415 * 11 9 8 19 19 H 1.09001 * 109.58930 * 113.79556 * 18 11 9 20 20 C 1.52999 * 109.70081 * 353.44484 * 18 11 9 21 21 N 1.46501 * 109.47254 * 298.25537 * 20 18 11 22 22 C 1.36942 * 120.00167 * 185.10230 * 21 20 18 23 23 H 1.07999 * 119.99921 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00057 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99976 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99860 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47128 * 59.99841 * 26 24 22 28 28 H 1.48502 * 109.46736 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47110 * 299.99757 * 26 24 22 30 30 H 1.08998 * 109.47131 * 269.97895 * 1 2 3 31 31 H 1.09005 * 109.46668 * 29.97782 * 1 2 3 32 32 H 1.08996 * 109.47105 * 149.97566 * 1 2 3 33 33 H 1.09009 * 109.58582 * 6.62724 * 12 11 9 34 34 H 1.09001 * 109.59132 * 246.20012 * 12 11 9 35 35 H 1.09004 * 109.49878 * 294.68828 * 13 12 11 36 36 H 1.09000 * 109.49872 * 174.58903 * 13 12 11 37 37 H 1.09000 * 109.45800 * 58.65504 * 14 13 12 38 38 H 1.08993 * 109.45993 * 178.61458 * 14 13 12 39 39 H 1.09002 * 109.47536 * 59.99451 * 17 15 14 40 40 H 1.09002 * 109.47318 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.47411 * 299.99937 * 17 15 14 42 42 H 1.09004 * 109.47524 * 58.25406 * 20 18 11 43 43 H 1.09006 * 109.47106 * 178.25650 * 20 18 11 44 44 H 0.96997 * 120.00022 * 5.09613 * 21 20 18 45 45 H 0.96993 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6553 -0.0006 6 6 3.6599 -0.6497 0.0044 7 17 5.0841 -1.6421 0.0122 8 6 2.3241 -1.1130 -0.0005 9 6 1.8858 -2.5202 -0.0001 10 8 1.7042 -3.1007 -1.0531 11 7 1.6864 -3.1635 1.1672 12 6 1.8187 -2.4524 2.4461 13 6 0.5367 -2.6575 3.2593 14 6 0.2606 -4.1563 3.3993 15 6 0.0566 -4.7708 2.0125 16 1 -0.7746 -4.2733 1.5128 17 6 -0.2518 -6.2626 2.1554 18 6 1.3331 -4.5895 1.1853 19 1 2.1446 -5.1614 1.6353 20 6 1.0918 -5.0793 -0.2440 21 7 -0.0319 -4.3437 -0.8291 22 6 -0.5011 -4.6837 -2.0699 23 1 -0.0425 -5.4939 -2.6173 24 6 -1.5655 -3.9863 -2.6246 25 7 -2.1241 -2.9986 -1.9577 26 14 -2.2050 -4.4498 -4.3174 27 1 -2.6692 -5.8602 -4.3021 28 1 -3.3378 -3.5602 -4.6791 29 1 -1.1168 -4.2975 -5.3164 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9664 -1.3886 2.2591 34 1 2.6697 -2.8499 2.9990 35 1 -0.2990 -2.1799 2.7478 36 1 0.6587 -2.2162 4.2484 37 1 1.1074 -4.6374 3.8886 38 1 -0.6376 -4.3057 3.9983 39 1 -1.1585 -6.3913 2.7467 40 1 -0.3966 -6.7000 1.1676 41 1 0.5804 -6.7596 2.6540 42 1 1.9874 -4.9105 -0.8420 43 1 0.8604 -6.1444 -0.2289 44 1 -0.4436 -3.6158 -0.3377 45 1 -2.8676 -2.5111 -2.3454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698947342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:31 Heat of formation + Delta-G solvation = 57.479234 kcal Electronic energy + Delta-G solvation = -29889.109503 eV Core-core repulsion = 25969.975458 eV Total energy + Delta-G solvation = -3919.134045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.63728 -41.17157 -38.28557 -37.90599 -36.31041 -34.56776 -33.68564 -33.52896 -32.20209 -31.66289 -28.93814 -27.99729 -26.97435 -25.65260 -24.25836 -23.10991 -22.99916 -22.19893 -20.87921 -19.61460 -19.09025 -18.46967 -17.36861 -16.98621 -16.46891 -16.30900 -16.06170 -15.96390 -15.67784 -15.36429 -15.02116 -14.69216 -14.60831 -14.35977 -14.03788 -13.96637 -13.66085 -13.32036 -13.28881 -13.20572 -13.00014 -12.97138 -12.76341 -12.73407 -12.62785 -12.43790 -12.10558 -11.95701 -11.80655 -11.64874 -11.55796 -11.35178 -11.05359 -10.78667 -10.50458 -10.07173 -9.58346 -9.33417 -8.48853 -7.74747 -4.89865 0.38217 0.49059 1.10433 1.46450 1.49385 1.54299 1.86613 1.92088 2.35917 2.67849 3.53835 3.58415 3.74120 3.87006 3.95722 3.98607 4.08999 4.17579 4.22921 4.35265 4.43592 4.50569 4.61728 4.66895 4.73711 4.77935 4.82219 4.89957 4.95125 5.00895 5.05157 5.10842 5.20134 5.21105 5.28083 5.37206 5.49085 5.56494 5.61481 5.69936 5.93815 6.01589 6.28773 6.47866 6.72498 7.54970 7.64079 8.35891 8.62706 9.49097 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.005659 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.099640 B = 4946.947228 C = 6218.592533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.154 3.846 3 N -0.429 5.429 4 H 0.464 0.536 5 N -0.290 5.290 6 C 0.147 3.853 7 Cl 0.017 6.983 8 C -0.278 4.278 9 C 0.566 3.434 10 O -0.503 6.503 11 N -0.601 5.601 12 C 0.114 3.886 13 C -0.129 4.129 14 C -0.105 4.105 15 C -0.095 4.095 16 H 0.046 0.954 17 C -0.136 4.136 18 C 0.153 3.847 19 H 0.091 0.909 20 C 0.158 3.842 21 N -0.693 5.693 22 C -0.207 4.207 23 H 0.053 0.947 24 C -0.075 4.075 25 N -0.961 5.961 26 Si 0.953 3.047 27 H -0.284 1.284 28 H -0.294 1.294 29 H -0.296 1.296 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.373 0.627 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 6.532 16.319 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.021 3.979 3 N -0.141 5.141 4 H 0.314 0.686 5 N -0.117 5.117 6 C -0.045 4.045 7 Cl 0.045 6.955 8 C -0.293 4.293 9 C 0.351 3.649 10 O -0.376 6.376 11 N -0.336 5.336 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.114 4.114 16 H 0.064 0.936 17 C -0.194 4.194 18 C 0.050 3.950 19 H 0.108 0.892 20 C 0.031 3.969 21 N -0.335 5.335 22 C -0.340 4.340 23 H 0.071 0.929 24 C -0.266 4.266 25 N -0.614 5.614 26 Si 0.785 3.215 27 H -0.210 1.210 28 H -0.220 1.220 29 H -0.224 1.224 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.033 0.967 44 H 0.207 0.793 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.369 7.056 15.573 19.495 hybrid contribution -0.994 -0.271 -1.532 1.847 sum 8.375 6.785 14.040 17.700 Atomic orbital electron populations 1.20615 0.84431 1.05090 1.05132 1.21605 0.95374 0.85742 0.95208 1.45766 1.01880 1.09130 1.57333 0.68646 1.77001 0.97926 1.10205 1.26557 1.22562 0.88598 0.90724 1.02613 1.98388 1.35184 1.65156 1.96818 1.19950 0.91486 0.94921 1.22971 1.17439 0.78519 0.84941 0.84027 1.91129 1.47166 1.66305 1.32960 1.47875 1.69853 1.09986 1.05856 1.21767 0.98744 0.97073 0.83263 1.21907 0.96843 0.97134 1.00833 1.21546 1.02739 0.95046 0.94904 1.21390 0.96387 0.97333 0.96339 0.93588 1.21705 1.02008 0.94503 1.01145 1.21480 0.97022 0.80822 0.95698 0.89169 1.20978 0.91271 0.93075 0.91581 1.42155 1.35273 1.39007 1.17091 1.19376 1.08915 1.10815 0.94915 0.92902 1.25108 1.00689 0.99754 1.01099 1.69730 1.27316 1.25556 1.38776 0.85489 0.77033 0.77081 0.81851 1.21041 1.22035 1.22395 0.87184 0.87989 0.91729 0.90525 0.90046 0.93067 0.88098 0.90085 0.90906 0.91995 0.94468 0.90865 0.96533 0.96659 0.79305 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 10.25 71.24 0.73 -1.78 16 2 C 0.15 4.30 7.05 42.15 0.30 4.59 16 3 N -0.43 -9.69 7.28 -46.79 -0.34 -10.03 16 4 H 0.46 6.41 8.96 -213.43 -1.91 4.49 16 5 N -0.29 -8.18 12.64 -48.96 -0.62 -8.80 16 6 C 0.15 4.59 7.89 85.66 0.68 5.26 16 7 Cl 0.02 0.48 29.19 -2.72 -0.08 0.40 16 8 C -0.28 -9.34 3.95 -20.13 -0.08 -9.42 16 9 C 0.57 22.14 6.33 86.65 0.55 22.69 16 10 O -0.50 -25.47 11.05 -4.03 -0.04 -25.52 16 11 N -0.60 -19.15 2.88 -798.94 -2.30 -21.45 16 12 C 0.11 2.59 6.32 86.36 0.55 3.14 16 13 C -0.13 -2.54 6.08 30.67 0.19 -2.35 16 14 C -0.10 -2.16 5.17 30.62 0.16 -2.00 16 15 C -0.09 -2.79 2.22 -10.72 -0.02 -2.81 16 16 H 0.05 1.77 6.70 -2.39 -0.02 1.76 16 17 C -0.14 -3.66 8.96 71.98 0.64 -3.02 16 18 C 0.15 5.01 2.62 44.97 0.12 5.13 16 19 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 20 C 0.16 6.94 4.76 86.38 0.41 7.35 16 21 N -0.69 -36.50 2.84 -343.43 -0.97 -37.47 16 22 C -0.21 -12.33 9.75 84.03 0.82 -11.51 16 23 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 24 C -0.07 -4.48 5.50 84.86 0.47 -4.02 16 25 N -0.96 -58.51 13.06 21.65 0.28 -58.22 16 26 Si 0.95 49.21 29.55 68.60 2.03 51.24 16 27 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 29 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 30 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.06 2.54 7.96 -2.39 -0.02 2.52 16 33 H 0.08 1.75 6.18 -2.38 -0.01 1.74 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.22 6.66 -2.39 -0.02 1.20 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.02 0.84 6.27 -2.38 -0.01 0.83 16 43 H 0.02 0.69 6.72 -2.38 -0.02 0.67 16 44 H 0.37 20.41 5.80 -92.71 -0.54 19.87 16 45 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -76.45 369.46 2.03 -74.42 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -1.41 Total: 24.19 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.50 Total: 11.24 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -3.95 Total: -135.97 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.52 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -76.45 2.03 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698947342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.897 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds