Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34230 * 126.27939 * 2 1 4 4 H 0.97001 * 125.74340 * 0.02562 * 3 2 1 5 5 N 1.39932 * 108.52068 * 180.02562 * 3 2 1 6 6 C 1.30534 * 108.89532 * 359.74704 * 5 3 2 7 7 Cl 1.73598 * 126.00672 * 180.26314 * 6 5 3 8 8 C 1.38064 * 126.27876 * 180.02562 * 2 1 3 9 9 C 1.47386 * 126.42593 * 359.93530 * 8 2 1 10 10 O 1.21608 * 120.00065 * 90.00144 * 9 8 2 11 11 N 1.34783 * 119.99816 * 270.00742 * 9 8 2 12 12 C 1.46920 * 120.63074 * 354.21293 * 11 9 8 13 13 C 1.53191 * 108.77753 * 233.58727 * 12 11 9 14 14 C 1.53046 * 109.31388 * 305.36950 * 13 12 11 15 15 C 1.53040 * 109.53650 * 61.36462 * 14 13 12 16 16 H 1.08994 * 109.49875 * 58.58683 * 15 14 13 17 17 C 1.53000 * 109.49750 * 178.65315 * 15 14 13 18 18 C 1.46922 * 120.62595 * 173.94004 * 11 9 8 19 19 H 1.09000 * 109.58467 * 246.19688 * 18 11 9 20 20 C 1.53002 * 109.58954 * 6.62480 * 18 11 9 21 21 N 1.46498 * 109.46695 * 292.78899 * 20 18 11 22 22 C 1.36941 * 119.99913 * 185.97972 * 21 20 18 23 23 H 1.08007 * 119.99810 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00374 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00447 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99707 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46906 * 90.00385 * 26 24 22 28 28 H 1.48506 * 109.47128 * 210.00279 * 26 24 22 29 29 H 1.48493 * 109.47306 * 330.00259 * 26 24 22 30 30 H 1.09004 * 109.46794 * 269.97433 * 1 2 3 31 31 H 1.09001 * 109.47130 * 29.97452 * 1 2 3 32 32 H 1.09002 * 109.47163 * 149.97482 * 1 2 3 33 33 H 1.09002 * 109.59172 * 353.37839 * 12 11 9 34 34 H 1.09006 * 109.58498 * 113.80196 * 12 11 9 35 35 H 1.09001 * 109.49372 * 65.32201 * 13 12 11 36 36 H 1.09001 * 109.49762 * 185.41694 * 13 12 11 37 37 H 1.08996 * 109.46089 * 181.38416 * 14 13 12 38 38 H 1.09002 * 109.45698 * 301.34291 * 14 13 12 39 39 H 1.09008 * 109.46966 * 59.99328 * 17 15 14 40 40 H 1.08999 * 109.47118 * 179.97438 * 17 15 14 41 41 H 1.09008 * 109.46912 * 299.99973 * 17 15 14 42 42 H 1.08996 * 109.47157 * 52.79437 * 20 18 11 43 43 H 1.08997 * 109.47080 * 172.79661 * 20 18 11 44 44 H 0.96999 * 120.00599 * 5.98514 * 21 20 18 45 45 H 0.96997 * 120.00170 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6553 -0.0006 6 6 3.6599 -0.6498 0.0045 7 17 5.0841 -1.6423 0.0124 8 6 2.3240 -1.1130 -0.0005 9 6 1.8858 -2.5202 0.0002 10 8 1.7041 -3.1010 -1.0526 11 7 1.6864 -3.1633 1.1678 12 6 2.0217 -2.5182 2.4445 13 6 2.9482 -3.4455 3.2372 14 6 2.2878 -4.8186 3.3811 15 6 2.0659 -5.4276 1.9947 16 1 3.0218 -5.5145 1.4783 17 6 1.4364 -6.8144 2.1409 18 6 1.1240 -4.5205 1.1882 19 1 0.1403 -4.5014 1.6573 20 6 1.0028 -5.0471 -0.2432 21 7 -0.0082 -4.2706 -0.9651 22 6 -0.3793 -4.6388 -2.2308 23 1 0.0736 -5.5014 -2.6969 24 6 -1.3369 -3.9028 -2.9151 25 7 -1.6939 -4.2570 -4.1314 26 14 -2.1197 -2.4105 -2.1091 27 1 -1.3207 -1.2000 -2.4273 28 1 -3.5029 -2.2396 -2.6219 29 1 -2.1580 -2.6057 -0.6375 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 2.5277 -1.5718 2.2540 34 1 1.1096 -2.3391 3.0140 35 1 3.8959 -3.5511 2.7090 36 1 3.1273 -3.0226 4.2257 37 1 2.9343 -5.4730 3.9659 38 1 1.3288 -4.7090 3.8874 39 1 0.4800 -6.7268 2.6565 40 1 1.2781 -7.2475 1.1533 41 1 2.1024 -7.4567 2.7173 42 1 1.9638 -4.9511 -0.7483 43 1 0.7074 -6.0961 -0.2206 44 1 -0.4147 -3.4957 -0.5466 45 1 -2.3633 -3.7429 -4.6094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698947343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 59.825361 kcal Electronic energy + Delta-G solvation = -29821.741966 eV Core-core repulsion = 25902.709657 eV Total energy + Delta-G solvation = -3919.032310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.72142 -41.25711 -38.40081 -37.95556 -36.50733 -34.75099 -33.79024 -33.73460 -32.38138 -32.16983 -29.08870 -28.22044 -27.07708 -25.65440 -23.97618 -23.08914 -23.06864 -22.30232 -21.04505 -20.11148 -19.57266 -18.47420 -17.48839 -17.06692 -16.63118 -16.37177 -16.21571 -15.96632 -15.86968 -15.37727 -15.17567 -15.00202 -14.66129 -14.33115 -14.17907 -14.09457 -13.86743 -13.70590 -13.51346 -13.41546 -13.09714 -13.05709 -12.92271 -12.74268 -12.64948 -12.46663 -12.06843 -11.90116 -11.84446 -11.77577 -11.61911 -11.50433 -11.09965 -10.88964 -10.56783 -10.18952 -9.70570 -9.52363 -8.81963 -7.90680 -5.13651 0.32932 0.41538 1.02270 1.26917 1.38678 1.45187 1.74986 1.82470 2.24708 2.56386 3.40159 3.43349 3.61543 3.65496 3.75826 3.90804 3.98355 4.08322 4.13197 4.25848 4.32528 4.36186 4.46210 4.56216 4.61918 4.66708 4.70175 4.81954 4.87281 4.90227 4.92062 5.00104 5.05755 5.15292 5.28961 5.31901 5.34639 5.46059 5.58532 5.82563 5.85750 5.93762 6.22049 6.31261 6.60376 7.20318 7.49587 7.98485 8.18752 9.32842 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008965 B = 0.006673 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.485835 B = 4195.136815 C = 6007.274696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.149 3.851 3 N -0.427 5.427 4 H 0.465 0.535 5 N -0.288 5.288 6 C 0.147 3.853 7 Cl 0.017 6.983 8 C -0.280 4.280 9 C 0.554 3.446 10 O -0.499 6.499 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.105 4.105 15 C -0.092 4.092 16 H 0.060 0.940 17 C -0.144 4.144 18 C 0.151 3.849 19 H 0.078 0.922 20 C 0.167 3.833 21 N -0.717 5.717 22 C -0.195 4.195 23 H 0.042 0.958 24 C -0.083 4.083 25 N -0.998 5.998 26 Si 0.952 3.048 27 H -0.271 1.271 28 H -0.300 1.300 29 H -0.249 1.249 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.358 0.642 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 9.909 23.288 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.016 3.984 3 N -0.139 5.139 4 H 0.315 0.685 5 N -0.114 5.114 6 C -0.045 4.045 7 Cl 0.045 6.955 8 C -0.296 4.296 9 C 0.338 3.662 10 O -0.371 6.371 11 N -0.339 5.339 12 C -0.011 4.011 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.112 4.112 16 H 0.079 0.921 17 C -0.202 4.202 18 C 0.047 3.953 19 H 0.096 0.904 20 C 0.041 3.959 21 N -0.361 5.361 22 C -0.327 4.327 23 H 0.060 0.940 24 C -0.272 4.272 25 N -0.651 5.651 26 Si 0.780 3.220 27 H -0.197 1.197 28 H -0.228 1.228 29 H -0.173 1.173 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.192 0.808 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.816 10.410 22.542 26.700 hybrid contribution -0.817 0.309 -0.841 1.213 sum 8.998 10.720 21.701 25.823 Atomic orbital electron populations 1.20891 0.84905 1.04834 1.06166 1.21527 0.95312 0.85821 0.95712 1.45765 1.01854 1.09167 1.57109 0.68474 1.77034 0.97891 1.10202 1.26268 1.22577 0.88676 0.90732 1.02496 1.98398 1.35184 1.65108 1.96785 1.19971 0.91656 0.94864 1.23107 1.17595 0.79245 0.85088 0.84245 1.91268 1.46566 1.66325 1.32928 1.47950 1.64183 1.15726 1.06065 1.21820 0.99864 0.96233 0.83197 1.21905 0.98151 0.95706 1.00955 1.21546 1.01924 0.96000 0.94731 1.21504 0.97968 0.94933 0.96824 0.92109 1.21828 1.01436 0.95199 1.01726 1.21591 0.96830 0.81418 0.95414 0.90448 1.20906 0.92028 0.92965 0.90043 1.42476 1.46199 1.32881 1.14500 1.18955 1.14466 1.07699 0.91552 0.93984 1.25454 1.01743 1.02971 0.97037 1.69919 1.37380 1.43885 1.13939 0.85497 0.76821 0.80647 0.79070 1.19727 1.22787 1.17342 0.85634 0.87208 0.92725 0.90510 0.89871 0.92625 0.88190 0.89877 0.90530 0.91691 0.93865 0.90592 0.96383 0.95636 0.80849 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.25 71.24 0.73 -1.66 16 2 C 0.15 3.74 7.29 42.15 0.31 4.04 16 3 N -0.43 -8.65 7.28 -46.79 -0.34 -9.00 16 4 H 0.46 5.29 8.96 -213.43 -1.91 3.37 16 5 N -0.29 -7.61 12.64 -48.95 -0.62 -8.23 16 6 C 0.15 4.35 7.59 85.66 0.65 5.00 16 7 Cl 0.02 0.49 29.19 -2.72 -0.08 0.41 16 8 C -0.28 -8.78 3.99 -20.13 -0.08 -8.86 16 9 C 0.55 20.24 6.31 86.65 0.55 20.79 16 10 O -0.50 -24.23 10.79 -4.06 -0.04 -24.28 16 11 N -0.60 -17.53 2.97 -798.10 -2.37 -19.90 16 12 C 0.11 2.18 6.31 86.36 0.55 2.72 16 13 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 14 C -0.10 -1.62 5.17 30.62 0.16 -1.47 16 15 C -0.09 -2.11 2.36 -10.57 -0.02 -2.14 16 16 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.14 -3.02 8.97 71.98 0.65 -2.38 16 18 C 0.15 4.58 2.43 45.12 0.11 4.69 16 19 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.17 7.11 4.77 86.38 0.41 7.52 16 21 N -0.72 -36.60 2.96 -343.45 -1.02 -37.62 16 22 C -0.19 -12.19 10.18 84.03 0.86 -11.34 16 23 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 24 C -0.08 -5.28 5.50 84.86 0.47 -4.81 16 25 N -1.00 -68.62 13.97 21.65 0.30 -68.32 16 26 Si 0.95 47.50 25.77 68.60 1.77 49.27 16 27 H -0.27 -12.84 6.73 99.48 0.67 -12.17 16 28 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 29 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 30 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.72 5.31 -2.39 -0.01 1.70 16 33 H 0.08 1.55 6.16 -2.39 -0.01 1.53 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.04 1.10 6.50 -2.39 -0.02 1.08 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.02 0.89 6.48 -2.39 -0.02 0.87 16 43 H 0.03 1.10 6.36 -2.39 -0.02 1.09 16 44 H 0.36 17.42 4.69 -92.71 -0.43 16.99 16 45 H 0.25 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -85.50 363.50 1.71 -83.80 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -1.40 Total: 23.57 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.51 Total: 10.29 kcal Atomic # 7 Polarization: -139.02 SS G_CDS: -4.04 Total: -143.06 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.28 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.77 Total: 49.27 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -0.08 Total: 0.41 kcal Total: -85.50 1.71 -83.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698947343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.622 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds