Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33685 * 126.27649 * 2 1 4 4 C 1.30613 * 108.99604 * 179.97438 * 3 2 1 5 5 O 1.33658 * 109.15766 * 359.97438 * 4 3 2 6 6 C 1.35346 * 107.68140 * 359.75903 * 5 4 3 7 7 C 1.46728 * 126.64512 * 180.25654 * 6 5 4 8 8 O 1.21684 * 120.00054 * 172.78441 * 7 6 5 9 9 N 1.34778 * 119.99835 * 352.79073 * 7 6 5 10 10 C 1.46498 * 120.00039 * 3.57378 * 9 7 6 11 11 C 1.46494 * 119.99687 * 183.57935 * 9 7 6 12 12 C 1.53000 * 109.47353 * 89.99394 * 11 9 7 13 13 H 1.08998 * 109.47424 * 305.00364 * 12 11 9 14 14 O 1.42907 * 109.46670 * 64.99952 * 12 11 9 15 15 C 1.53004 * 109.47163 * 184.99537 * 12 11 9 16 16 N 1.46899 * 109.47027 * 180.02562 * 15 12 11 17 17 C 1.46896 * 111.00240 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47384 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00023 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00209 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00406 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99676 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00125 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00228 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47112 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47478 * 120.00077 * 25 23 21 28 28 H 1.48504 * 109.47156 * 240.00190 * 25 23 21 29 29 H 1.09007 * 109.47031 * 90.01962 * 1 2 3 30 30 H 1.08994 * 109.47170 * 210.02018 * 1 2 3 31 31 H 1.09001 * 109.46707 * 330.02762 * 1 2 3 32 32 H 1.07999 * 125.42273 * 179.97438 * 4 3 2 33 33 H 1.08995 * 109.47236 * 83.96456 * 10 9 7 34 34 H 1.09007 * 109.46826 * 203.96653 * 10 9 7 35 35 H 1.09001 * 109.46894 * 323.96060 * 10 9 7 36 36 H 1.08998 * 109.47080 * 209.99635 * 11 9 7 37 37 H 1.09003 * 109.47159 * 329.99588 * 11 9 7 38 38 H 0.96693 * 114.00143 * 60.00471 * 14 12 11 39 39 H 1.08995 * 109.47104 * 299.99937 * 15 12 11 40 40 H 1.08994 * 109.46552 * 60.00613 * 15 12 11 41 41 H 1.00900 * 111.00327 * 56.05002 * 16 15 12 42 42 H 1.09000 * 109.47536 * 300.00331 * 17 16 15 43 43 H 1.09006 * 109.47097 * 60.00132 * 17 16 15 44 44 H 0.97009 * 119.99684 * 0.02562 * 20 18 17 45 45 H 0.96993 * 120.00280 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6897 0.0006 5 8 3.5890 -0.6461 0.0015 6 6 2.3136 -1.0992 0.0069 7 6 1.8825 -2.5017 0.0151 8 8 0.7048 -2.7754 0.1517 9 7 2.7911 -3.4868 -0.1287 10 6 4.2169 -3.1614 -0.2145 11 6 2.3528 -4.8828 -0.1993 12 6 2.0894 -5.2616 -1.6581 13 1 1.3774 -4.5600 -2.0928 14 8 3.3149 -5.2125 -2.3916 15 6 1.5135 -6.6777 -1.7213 16 7 1.2612 -7.0416 -3.1220 17 6 0.7060 -8.3979 -3.2218 18 6 0.4603 -8.7349 -4.6700 19 8 0.7224 -7.9250 -5.5340 20 7 -0.0497 -9.9366 -5.0051 21 6 -0.2737 -10.2430 -6.3225 22 1 -0.0411 -9.5215 -7.0918 23 6 -0.7990 -11.4821 -6.6680 24 7 -1.0815 -12.3601 -5.7321 25 14 -1.1036 -11.8997 -8.4630 26 1 -0.7043 -10.7497 -9.3135 27 1 -0.3021 -13.0927 -8.8366 28 1 -2.5459 -12.1890 -8.6661 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8903 0.5134 32 1 4.4044 1.3442 0.0003 33 1 4.6256 -3.0516 0.7900 34 1 4.7418 -3.9628 -0.7347 35 1 4.3442 -2.2279 -0.7626 36 1 3.1299 -5.5288 0.2092 37 1 1.4370 -5.0058 0.3790 38 1 3.9963 -5.8128 -2.0595 39 1 2.2255 -7.3792 -1.2867 40 1 0.5788 -6.7151 -1.1619 41 1 2.1001 -6.9523 -3.6756 42 1 1.4119 -9.1117 -2.7970 43 1 -0.2346 -8.4468 -2.6732 44 1 -0.2589 -10.5845 -4.3141 45 1 -1.4486 -13.2250 -5.9732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700934598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -119.150081 kcal Electronic energy + Delta-G solvation = -28923.432554 eV Core-core repulsion = 24555.930122 eV Total energy + Delta-G solvation = -4367.502432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51144 -41.02665 -40.18384 -38.94549 -36.97189 -36.27424 -35.90046 -35.51205 -33.28340 -32.85981 -31.66430 -29.38891 -28.72515 -27.53142 -26.60248 -25.15862 -24.11660 -22.90701 -22.47515 -21.14671 -21.01502 -19.92936 -18.69245 -18.26038 -18.10919 -17.70305 -17.43997 -17.23324 -16.96454 -16.65411 -16.24837 -16.08132 -15.84608 -15.62542 -15.26961 -15.00051 -14.86798 -14.39308 -14.31020 -14.20115 -14.14659 -13.77672 -13.48293 -13.30334 -13.24167 -13.17497 -12.97274 -12.78174 -12.61508 -12.42000 -12.20702 -12.12442 -12.08182 -11.86860 -11.52903 -11.43393 -11.21248 -10.37455 -10.14663 -10.02764 -9.63389 -9.30429 -8.48041 -5.96830 -0.26706 1.33936 1.35797 1.37792 1.41148 1.55528 1.84357 2.01384 2.03727 2.28617 2.88058 3.12975 3.19061 3.42250 3.43633 3.56886 3.64844 3.90093 4.00176 4.10862 4.23977 4.30865 4.35239 4.37427 4.43380 4.48755 4.55424 4.61213 4.62871 4.71388 4.76165 4.77719 4.87683 5.04755 5.09368 5.27635 5.37254 5.40050 5.87288 6.04386 6.09881 6.41457 6.49811 6.59114 6.81178 6.87376 7.11592 7.54791 8.10706 8.69543 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.001735 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.885024 B =16136.825380 C =16419.605726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.067 3.933 3 N -0.528 5.528 4 C 0.223 3.777 5 O -0.181 6.181 6 C -0.133 4.133 7 C 0.597 3.403 8 O -0.546 6.546 9 N -0.594 5.594 10 C 0.075 3.925 11 C 0.091 3.909 12 C 0.106 3.894 13 H 0.070 0.930 14 O -0.566 6.566 15 C 0.034 3.966 16 N -0.687 5.687 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.275 1.275 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.308 0.692 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.387 0.613 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.348 0.652 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.360 19.663 20.011 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 N -0.257 5.257 4 C -0.002 4.002 5 O -0.068 6.068 6 C -0.188 4.188 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.324 5.324 10 C -0.067 4.067 11 C -0.032 4.032 12 C 0.045 3.955 13 H 0.088 0.912 14 O -0.373 6.373 15 C -0.095 4.095 16 N -0.321 5.321 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.323 0.677 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.799 21.162 19.151 31.280 hybrid contribution 0.782 -2.043 -0.232 2.200 sum 13.581 19.119 18.920 30.132 Atomic orbital electron populations 1.20412 0.85284 1.04538 1.03838 1.22321 0.99005 0.86995 0.97286 1.70384 1.02741 1.31524 1.21050 1.29632 0.98102 0.79709 0.92708 1.84711 1.28093 1.24735 1.69276 1.22636 0.82345 0.95737 1.18111 1.16695 0.85363 0.82321 0.77085 1.90846 1.17412 1.82268 1.52128 1.47666 1.08287 1.06213 1.70283 1.22200 0.78164 1.03282 1.03026 1.22296 1.03744 0.80862 0.96286 1.22146 0.86073 0.95709 0.91524 0.91173 1.86676 1.24436 1.66938 1.59258 1.22628 1.01905 0.96103 0.88883 1.59899 1.36763 1.24646 1.10744 1.21537 1.02041 0.90818 0.92185 1.20960 0.82428 0.82285 0.92066 1.90502 1.57787 1.50093 1.52858 1.41932 1.56453 1.14370 1.08219 1.19699 1.41484 1.00536 0.84726 0.90511 1.26042 0.96210 0.94910 1.04105 1.69670 1.43979 1.07800 1.34560 0.84864 0.78303 0.78136 0.76979 1.19965 1.19372 1.19596 0.90014 0.89539 0.89234 0.67694 0.90781 0.88248 0.90744 0.85688 0.88938 0.76383 0.91803 0.89571 0.83245 0.90974 0.87938 0.76876 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.96 71.24 0.71 -0.95 16 2 C 0.07 1.44 7.16 41.84 0.30 1.74 16 3 N -0.53 -9.68 11.26 -303.14 -3.41 -13.09 16 4 C 0.22 2.22 13.21 130.42 1.72 3.94 16 5 O -0.18 -2.52 7.51 -7.06 -0.05 -2.57 16 6 C -0.13 -2.74 6.79 24.05 0.16 -2.58 16 7 C 0.60 13.68 7.64 86.46 0.66 14.35 16 8 O -0.55 -15.58 14.32 -4.30 -0.06 -15.65 16 9 N -0.59 -9.97 2.84 -851.46 -2.42 -12.39 16 10 C 0.07 0.78 9.41 127.77 1.20 1.98 16 11 C 0.09 1.31 5.06 86.38 0.44 1.75 16 12 C 0.11 2.15 3.48 30.60 0.11 2.25 16 13 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 14 O -0.57 -10.93 11.62 -148.98 -1.73 -12.66 16 15 C 0.03 0.72 5.39 86.30 0.47 1.19 16 16 N -0.69 -22.08 6.12 -517.95 -3.17 -25.25 16 17 C 0.07 2.28 6.17 85.56 0.53 2.81 16 18 C 0.43 21.22 7.82 87.66 0.69 21.91 16 19 O -0.63 -36.07 15.78 -3.07 -0.05 -36.12 16 20 N -0.57 -29.83 5.29 -306.98 -1.62 -31.46 16 21 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 25 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.09 1.91 6.33 -2.39 -0.02 1.89 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.31 -0.95 8.06 -2.91 -0.02 -0.98 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.70 7.24 -2.38 -0.02 0.68 16 35 H 0.07 0.90 5.42 -2.39 -0.01 0.88 16 36 H 0.13 0.84 8.07 -2.39 -0.02 0.82 16 37 H 0.09 1.54 7.37 -2.39 -0.02 1.52 16 38 H 0.39 3.82 9.04 -74.06 -0.67 3.15 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.35 11.99 7.82 -89.69 -0.70 11.29 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.40 19.46 7.90 -92.70 -0.73 18.73 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -83.77 383.79 -2.98 -86.75 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -1.04 Total: 36.88 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 8.26 Total: 29.59 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -10.34 Total: -131.72 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -1.89 Total: -67.00 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -83.77 -2.98 -86.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700934598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.396 kcal (2) G-P(sol) polarization free energy of solvation -83.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds