Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47402 * 2 1 4 4 N 1.34232 * 126.28235 * 264.98063 * 3 2 1 5 5 H 0.97003 * 125.73293 * 0.02562 * 4 3 2 6 6 N 1.39931 * 108.52654 * 179.97438 * 4 3 2 7 7 C 1.30534 * 108.89158 * 0.02562 * 6 4 3 8 8 Cl 1.73594 * 126.00259 * 179.97438 * 7 6 4 9 9 C 1.38067 * 126.27881 * 85.24703 * 3 2 1 10 10 C 1.47387 * 126.42745 * 359.97438 * 9 3 2 11 11 O 1.21607 * 119.99942 * 270.19474 * 10 9 3 12 12 N 1.34771 * 119.99571 * 90.18839 * 10 9 3 13 13 C 1.46932 * 120.63367 * 354.66108 * 12 10 9 14 14 C 1.52759 * 109.00994 * 233.58199 * 13 12 10 15 15 C 1.53045 * 109.38621 * 305.59028 * 14 13 12 16 16 C 1.53041 * 109.53684 * 61.23824 * 15 14 13 17 17 C 1.46929 * 120.62920 * 174.94232 * 12 10 9 18 18 H 1.08998 * 109.58752 * 246.29846 * 17 12 10 19 19 C 1.52999 * 109.58666 * 6.58155 * 17 12 10 20 20 N 1.46497 * 109.47083 * 181.20140 * 19 17 12 21 21 C 1.36946 * 119.99723 * 185.48043 * 20 19 17 22 22 H 1.07992 * 119.99943 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99907 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46987 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47417 * 119.99823 * 25 23 21 28 28 H 1.48501 * 109.47228 * 239.99844 * 25 23 21 29 29 H 1.08996 * 109.47571 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47043 * 299.99905 * 1 2 3 31 31 H 1.09003 * 109.47113 * 59.99536 * 1 2 3 32 32 H 1.09001 * 109.47043 * 240.00095 * 2 1 3 33 33 H 1.09006 * 109.47178 * 119.99940 * 2 1 3 34 34 H 1.08993 * 109.58454 * 353.42323 * 13 12 10 35 35 H 1.09004 * 109.58436 * 113.84821 * 13 12 10 36 36 H 1.08998 * 109.56863 * 185.55114 * 14 13 12 37 37 H 1.09004 * 109.38684 * 65.51418 * 14 13 12 38 38 H 1.09001 * 109.45618 * 301.21902 * 15 14 13 39 39 H 1.09000 * 109.45816 * 181.25829 * 15 14 13 40 40 H 1.09001 * 109.49947 * 178.68715 * 16 15 14 41 41 H 1.09003 * 109.49994 * 58.58671 * 16 15 14 42 42 H 1.09004 * 109.46696 * 301.19923 * 19 17 12 43 43 H 1.09004 * 109.47160 * 61.19626 * 19 17 12 44 44 H 0.96999 * 120.00469 * 5.46944 * 20 19 17 45 45 H 0.96997 * 120.00446 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3864 2.1381 -1.0779 5 1 2.3624 1.8290 -1.9970 6 7 2.7950 3.4072 -0.6529 7 6 2.6961 3.4696 0.6472 8 17 3.0892 4.8413 1.6358 9 6 2.2178 2.2218 1.1092 10 6 1.9613 1.8478 2.5116 11 8 0.8651 2.0404 3.0015 12 7 2.9416 1.2921 3.2508 13 6 4.2334 0.9457 2.6423 14 6 4.5440 -0.5211 2.9351 15 6 4.4748 -0.7634 4.4447 16 6 3.0623 -0.4572 4.9479 17 6 2.7368 1.0155 4.6792 18 1 3.3941 1.6513 5.2724 19 6 1.2795 1.2951 5.0520 20 7 1.0850 1.0460 6.4825 21 6 -0.1696 1.1215 7.0262 22 1 -1.0155 1.3650 6.4005 23 6 -0.3539 0.8861 8.3817 24 7 0.6771 0.5898 9.1443 25 14 -2.0651 0.9898 9.1235 26 1 -3.0444 1.3369 8.0625 27 1 -2.4259 -0.3209 9.7211 28 1 -2.0855 2.0364 10.1768 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1822 1.0988 1.5644 35 1 5.0170 1.5738 3.0660 36 1 5.5436 -0.7618 2.5735 37 1 3.8128 -1.1533 2.4313 38 1 5.1892 -0.1134 4.9499 39 1 4.7181 -1.8045 4.6568 40 1 3.0074 -0.6523 6.0189 41 1 2.3447 -1.0895 4.4252 42 1 1.0404 2.3348 4.8283 43 1 0.6252 0.6399 4.4768 44 1 1.8448 0.8275 7.0445 45 1 0.5484 0.4249 10.0915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713262653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = 52.848763 kcal Electronic energy + Delta-G solvation = -28724.995877 eV Core-core repulsion = 24805.661039 eV Total energy + Delta-G solvation = -3919.334838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88526 -39.95061 -37.10786 -36.97979 -34.73020 -34.40478 -32.78718 -32.08786 -31.37363 -29.79452 -29.52744 -26.26974 -24.59402 -24.20233 -23.29170 -22.23296 -22.04500 -21.01601 -20.32654 -18.83175 -17.86593 -16.98193 -16.38069 -15.88026 -15.55520 -15.44791 -14.94406 -14.64404 -14.48967 -14.23041 -14.11305 -13.87840 -13.56207 -13.29774 -13.04968 -12.94051 -12.67440 -12.59556 -12.24559 -12.08830 -11.89000 -11.64191 -11.57972 -11.49396 -11.01970 -10.90402 -10.82486 -10.77132 -10.66243 -10.47685 -10.32192 -9.90694 -9.71615 -9.61105 -9.12469 -8.80733 -8.65119 -8.25365 -6.70252 -5.61914 -2.87685 1.24275 1.26597 1.96099 2.58952 2.73467 3.22646 3.53303 3.59323 3.62287 4.11582 4.42616 4.56167 4.74000 4.79452 4.83314 4.86912 4.95190 5.07077 5.12526 5.24417 5.29588 5.44535 5.47375 5.54280 5.62210 5.64140 5.70316 5.73091 5.85931 5.87252 6.01695 6.05086 6.06156 6.28052 6.33618 6.34437 6.60651 6.66073 6.82223 6.99404 7.17671 7.36174 7.63021 7.89705 8.43463 8.60206 9.68895 10.28471 10.63347 11.61813 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.003589 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.995503 B = 7800.299469 C = 8146.173066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 C 0.140 3.860 4 N -0.448 5.448 5 H 0.447 0.553 6 N -0.278 5.278 7 C 0.158 3.842 8 Cl 0.023 6.977 9 C -0.256 4.256 10 C 0.587 3.413 11 O -0.500 6.500 12 N -0.596 5.596 13 C 0.112 3.888 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.125 4.125 17 C 0.140 3.860 18 H 0.072 0.928 19 C 0.163 3.837 20 N -0.738 5.738 21 C -0.221 4.221 22 H 0.070 0.930 23 C -0.020 4.020 24 N -0.939 5.939 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.378 0.622 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 -2.073 -23.684 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C 0.008 3.992 4 N -0.157 5.157 5 H 0.293 0.707 6 N -0.104 5.104 7 C -0.034 4.034 8 Cl 0.051 6.949 9 C -0.271 4.271 10 C 0.372 3.628 11 O -0.374 6.374 12 N -0.330 5.330 13 C -0.011 4.011 14 C -0.171 4.171 15 C -0.158 4.158 16 C -0.163 4.163 17 C 0.038 3.962 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.383 5.383 21 C -0.353 4.353 22 H 0.088 0.912 23 C -0.214 4.214 24 N -0.589 5.589 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.107 -1.140 -24.356 26.395 hybrid contribution -0.655 -0.370 0.878 1.156 sum 9.452 -1.510 -23.478 25.354 Atomic orbital electron populations 1.21780 0.92701 1.03025 1.03424 1.20396 0.97715 0.87817 1.04599 1.21454 0.96381 0.95301 0.86042 1.45822 1.51716 1.09255 1.08938 0.70749 1.77147 1.23619 0.98773 1.10849 1.22586 1.00025 0.90300 0.90522 1.98436 1.92119 1.39436 1.64938 1.19943 1.17782 0.94230 0.95162 1.17193 0.84267 0.77748 0.83570 1.90947 1.23219 1.52851 1.70333 1.48040 1.13733 1.61070 1.10120 1.21541 0.85382 0.95926 0.98278 1.21843 1.01541 0.96022 0.97664 1.21557 0.98001 1.01519 0.94755 1.21930 0.95599 0.95834 1.02957 1.21627 1.00266 0.95829 0.78526 0.91013 1.21303 0.89758 0.99760 0.85521 1.42580 1.07420 1.84964 1.03385 1.19285 0.86110 1.38144 0.91726 0.91154 1.24680 0.97070 1.03369 0.96326 1.69666 1.28415 1.55721 1.05102 0.86144 0.84309 0.77020 0.79006 1.20601 1.22100 1.22068 0.91147 0.90733 0.92588 0.89816 0.88456 0.90511 0.91475 0.91128 0.91737 0.91844 0.91860 0.89502 0.91719 0.93714 0.94692 0.78837 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.15 0.37 -0.91 16 2 C -0.07 -0.49 6.27 -27.88 -0.17 -0.66 16 3 C 0.14 1.36 6.26 -81.60 -0.51 0.85 16 4 N -0.45 -3.77 7.28 33.86 0.25 -3.52 16 5 H 0.45 2.00 8.96 -182.72 -1.64 0.36 16 6 N -0.28 -3.28 12.64 33.18 0.42 -2.86 16 7 C 0.16 2.09 7.89 -16.90 -0.13 1.95 16 8 Cl 0.02 0.30 29.19 -51.86 -1.51 -1.21 16 9 C -0.26 -3.35 3.99 -105.04 -0.42 -3.77 16 10 C 0.59 9.38 7.05 -12.54 -0.09 9.29 16 11 O -0.50 -10.12 12.51 5.27 0.07 -10.05 16 12 N -0.60 -8.61 2.98 -166.75 -0.50 -9.11 16 13 C 0.11 1.20 6.29 -3.93 -0.02 1.18 16 14 C -0.13 -1.24 6.06 -26.83 -0.16 -1.41 16 15 C -0.12 -1.38 5.89 -26.69 -0.16 -1.54 16 16 C -0.12 -1.93 5.14 -26.61 -0.14 -2.07 16 17 C 0.14 2.41 3.02 -67.60 -0.20 2.21 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.16 3.65 4.09 -4.04 -0.02 3.64 16 20 N -0.74 -19.53 5.29 -59.91 -0.32 -19.85 16 21 C -0.22 -6.51 9.99 -15.06 -0.15 -6.67 16 22 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.94 -29.02 13.06 55.49 0.72 -28.30 16 25 Si 0.90 23.37 29.55 -169.99 -5.02 18.34 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.08 0.75 6.17 -51.93 -0.32 0.43 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.54 7.27 -51.93 -0.38 1.16 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.12 6.34 -51.93 -0.33 0.79 16 43 H 0.04 0.84 7.13 -51.93 -0.37 0.47 16 44 H 0.38 10.23 6.88 -40.82 -0.28 9.95 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -35.12 377.66 -10.04 -45.16 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.93 Total: 4.29 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.91 Total: 1.42 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.58 Total: -63.64 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.51 Total: -1.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.12 -10.04 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713262653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.012 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds