Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47402 * 2 1 4 4 N 1.34232 * 126.28235 * 264.98063 * 3 2 1 5 5 H 0.97003 * 125.73293 * 0.02562 * 4 3 2 6 6 N 1.39931 * 108.52654 * 179.97438 * 4 3 2 7 7 C 1.30534 * 108.89158 * 0.02562 * 6 4 3 8 8 Cl 1.73594 * 126.00259 * 179.97438 * 7 6 4 9 9 C 1.38067 * 126.27881 * 85.24703 * 3 2 1 10 10 C 1.47387 * 126.42745 * 359.97438 * 9 3 2 11 11 O 1.21607 * 119.99942 * 270.19474 * 10 9 3 12 12 N 1.34771 * 119.99571 * 90.18839 * 10 9 3 13 13 C 1.46932 * 120.63367 * 354.66108 * 12 10 9 14 14 C 1.52759 * 109.00994 * 233.58199 * 13 12 10 15 15 C 1.53045 * 109.38621 * 305.59028 * 14 13 12 16 16 C 1.53041 * 109.53684 * 61.23824 * 15 14 13 17 17 C 1.46929 * 120.62920 * 174.94232 * 12 10 9 18 18 H 1.08998 * 109.58752 * 246.29846 * 17 12 10 19 19 C 1.52999 * 109.58666 * 6.58155 * 17 12 10 20 20 N 1.46497 * 109.47083 * 181.20140 * 19 17 12 21 21 C 1.36946 * 119.99723 * 185.48043 * 20 19 17 22 22 H 1.07992 * 119.99943 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99907 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46987 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47417 * 119.99823 * 25 23 21 28 28 H 1.48501 * 109.47228 * 239.99844 * 25 23 21 29 29 H 1.08996 * 109.47571 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47043 * 299.99905 * 1 2 3 31 31 H 1.09003 * 109.47113 * 59.99536 * 1 2 3 32 32 H 1.09001 * 109.47043 * 240.00095 * 2 1 3 33 33 H 1.09006 * 109.47178 * 119.99940 * 2 1 3 34 34 H 1.08993 * 109.58454 * 353.42323 * 13 12 10 35 35 H 1.09004 * 109.58436 * 113.84821 * 13 12 10 36 36 H 1.08998 * 109.56863 * 185.55114 * 14 13 12 37 37 H 1.09004 * 109.38684 * 65.51418 * 14 13 12 38 38 H 1.09001 * 109.45618 * 301.21902 * 15 14 13 39 39 H 1.09000 * 109.45816 * 181.25829 * 15 14 13 40 40 H 1.09001 * 109.49947 * 178.68715 * 16 15 14 41 41 H 1.09003 * 109.49994 * 58.58671 * 16 15 14 42 42 H 1.09004 * 109.46696 * 301.19923 * 19 17 12 43 43 H 1.09004 * 109.47160 * 61.19626 * 19 17 12 44 44 H 0.96999 * 120.00469 * 5.46944 * 20 19 17 45 45 H 0.96997 * 120.00446 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3864 2.1381 -1.0779 5 1 2.3624 1.8290 -1.9970 6 7 2.7950 3.4072 -0.6529 7 6 2.6961 3.4696 0.6472 8 17 3.0892 4.8413 1.6358 9 6 2.2178 2.2218 1.1092 10 6 1.9613 1.8478 2.5116 11 8 0.8651 2.0404 3.0015 12 7 2.9416 1.2921 3.2508 13 6 4.2334 0.9457 2.6423 14 6 4.5440 -0.5211 2.9351 15 6 4.4748 -0.7634 4.4447 16 6 3.0623 -0.4572 4.9479 17 6 2.7368 1.0155 4.6792 18 1 3.3941 1.6513 5.2724 19 6 1.2795 1.2951 5.0520 20 7 1.0850 1.0460 6.4825 21 6 -0.1696 1.1215 7.0262 22 1 -1.0155 1.3650 6.4005 23 6 -0.3539 0.8861 8.3817 24 7 0.6771 0.5898 9.1443 25 14 -2.0651 0.9898 9.1235 26 1 -3.0444 1.3369 8.0625 27 1 -2.4259 -0.3209 9.7211 28 1 -2.0855 2.0364 10.1768 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1822 1.0988 1.5644 35 1 5.0170 1.5738 3.0660 36 1 5.5436 -0.7618 2.5735 37 1 3.8128 -1.1533 2.4313 38 1 5.1892 -0.1134 4.9499 39 1 4.7181 -1.8045 4.6568 40 1 3.0074 -0.6523 6.0189 41 1 2.3447 -1.0895 4.4252 42 1 1.0404 2.3348 4.8283 43 1 0.6252 0.6399 4.4768 44 1 1.8448 0.8275 7.0445 45 1 0.5484 0.4249 10.0915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713262653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 28.513547 kcal Electronic energy + Delta-G solvation = -28726.051131 eV Core-core repulsion = 24805.661039 eV Total energy + Delta-G solvation = -3920.390092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.80235 -41.17807 -38.33404 -37.97457 -36.58273 -35.18426 -34.06406 -33.70034 -32.40096 -31.42602 -30.48839 -27.80333 -25.97737 -25.11096 -24.81665 -23.45891 -22.96179 -22.44866 -21.35208 -19.96225 -19.18006 -18.67708 -17.57339 -17.13278 -16.51778 -16.44851 -16.41595 -16.03437 -15.57600 -15.44985 -15.17985 -15.14134 -14.89021 -14.68064 -14.37025 -14.19933 -13.97863 -13.69106 -13.46780 -13.14579 -13.07201 -12.93223 -12.83986 -12.69909 -12.38885 -12.23729 -12.14442 -12.06805 -11.98231 -11.78358 -11.76352 -11.54060 -11.38128 -10.96642 -10.59180 -10.40081 -9.80964 -9.57235 -8.90772 -7.93238 -5.20481 0.34221 0.41137 0.97113 1.45647 1.46966 1.51659 1.57881 1.76527 2.11394 2.58621 3.34857 3.39910 3.56099 3.73548 3.86664 3.90729 3.95788 4.10102 4.14303 4.18657 4.23558 4.31592 4.38896 4.44641 4.53412 4.63932 4.71335 4.74500 4.86025 4.94187 4.99147 5.04857 5.10257 5.16785 5.23495 5.31393 5.32467 5.35691 5.49937 5.52355 5.71210 5.95024 6.22307 6.29621 6.45544 7.21352 7.36084 8.10867 8.38429 9.30540 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.003589 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.995503 B = 7800.299469 C = 8146.173066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C 0.165 3.835 4 N -0.421 5.421 5 H 0.467 0.533 6 N -0.287 5.287 7 C 0.146 3.854 8 Cl 0.011 6.989 9 C -0.285 4.285 10 C 0.589 3.411 11 O -0.556 6.556 12 N -0.590 5.590 13 C 0.107 3.893 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.117 4.117 17 C 0.149 3.851 18 H 0.067 0.933 19 C 0.177 3.823 20 N -0.744 5.744 21 C -0.238 4.238 22 H 0.061 0.939 23 C -0.071 4.071 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.290 1.290 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.016 0.984 44 H 0.373 0.627 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -3.624 -26.316 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C 0.031 3.969 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.113 5.113 7 C -0.045 4.045 8 Cl 0.039 6.961 9 C -0.300 4.300 10 C 0.376 3.624 11 O -0.434 6.434 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.155 4.155 17 C 0.046 3.954 18 H 0.085 0.915 19 C 0.051 3.949 20 N -0.389 5.389 21 C -0.370 4.370 22 H 0.079 0.921 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.199 1.199 27 H -0.214 1.214 28 H -0.217 1.217 29 H 0.104 0.896 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.434 -2.694 -27.064 29.504 hybrid contribution -1.068 0.108 1.605 1.931 sum 10.366 -2.586 -25.459 27.610 Atomic orbital electron populations 1.21752 0.93599 1.03590 1.01868 1.20555 0.96718 0.86347 1.06667 1.21691 0.94167 0.95874 0.85148 1.45813 1.49847 1.07895 1.09745 0.68217 1.77103 1.23913 1.00300 1.09977 1.22586 1.00962 0.90038 0.90955 1.98424 1.92234 1.40048 1.65428 1.19713 1.20721 0.95330 0.94277 1.17594 0.83496 0.76648 0.84683 1.90916 1.25533 1.55099 1.71827 1.48092 1.15122 1.60391 1.08711 1.21861 0.83267 0.97266 0.99057 1.21835 1.03793 0.94722 0.95830 1.21530 0.94640 1.02599 0.96423 1.21803 0.98572 0.93961 1.01177 1.21277 0.96356 0.97227 0.80556 0.91486 1.21116 0.93196 0.97525 0.83037 1.42713 1.06428 1.84762 1.04970 1.19518 0.87031 1.38266 0.92231 0.92075 1.25468 1.01010 1.03287 0.96549 1.69805 1.30346 1.56397 1.05222 0.85115 0.79850 0.77054 0.78028 1.19882 1.21351 1.21716 0.89581 0.95144 0.91246 0.85030 0.89048 0.88806 0.90606 0.87534 0.91128 0.91366 0.90246 0.92418 0.92664 0.96463 0.96572 0.79432 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.89 71.98 0.71 -1.58 16 2 C -0.06 -0.74 6.27 29.85 0.19 -0.56 16 3 C 0.17 2.81 6.26 42.15 0.26 3.08 16 4 N -0.42 -5.75 7.28 -46.79 -0.34 -6.09 16 5 H 0.47 2.19 8.96 -213.42 -1.91 0.27 16 6 N -0.29 -6.22 12.64 -48.95 -0.62 -6.84 16 7 C 0.15 3.77 7.89 85.66 0.68 4.44 16 8 Cl 0.01 0.29 29.19 -2.72 -0.08 0.21 16 9 C -0.28 -7.29 3.99 -20.13 -0.08 -7.38 16 10 C 0.59 19.37 7.05 86.65 0.61 19.99 16 11 O -0.56 -24.14 12.51 -4.05 -0.05 -24.19 16 12 N -0.59 -17.17 2.98 -799.73 -2.38 -19.55 16 13 C 0.11 2.05 6.29 86.22 0.54 2.59 16 14 C -0.12 -1.89 6.06 30.53 0.19 -1.71 16 15 C -0.11 -2.38 5.89 30.62 0.18 -2.20 16 16 C -0.12 -3.67 5.14 30.67 0.16 -3.51 16 17 C 0.15 5.36 3.02 44.98 0.14 5.50 16 18 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 19 C 0.18 8.49 4.09 86.38 0.35 8.84 16 20 N -0.74 -41.53 5.29 -343.45 -1.82 -43.34 16 21 C -0.24 -14.61 9.99 84.03 0.84 -13.77 16 22 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 24 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 25 Si 0.97 48.88 29.55 68.60 2.03 50.91 16 26 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 1.26 8.08 -2.38 -0.02 1.24 16 34 H 0.09 1.53 6.17 -2.39 -0.01 1.52 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 2.14 7.27 -2.39 -0.02 2.12 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 0.94 6.34 -2.38 -0.02 0.93 16 43 H 0.02 0.84 7.13 -2.38 -0.02 0.82 16 44 H 0.37 21.24 6.88 -92.71 -0.64 20.60 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -81.14 377.66 0.73 -80.40 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -1.52 Total: 19.28 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.23 Total: 9.90 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -4.87 Total: -136.52 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -81.14 0.73 -80.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713262653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.916 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds