Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30856 * 125.89748 * 2 1 4 4 N 1.40077 * 108.22632 * 180.19293 * 3 2 1 5 5 C 1.46497 * 126.03529 * 179.81745 * 4 3 2 6 6 C 1.50700 * 109.47213 * 269.69214 * 5 4 3 7 7 O 1.21284 * 119.99873 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00339 * 180.02562 * 6 5 4 9 9 C 1.47290 * 125.79121 * 359.97438 * 8 6 5 10 10 C 1.54325 * 107.30599 * 178.92556 * 9 8 6 11 11 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 12 12 H 1.09008 * 111.00345 * 277.42446 * 11 10 9 13 13 C 1.52999 * 111.00682 * 153.57509 * 11 10 9 14 14 N 1.46503 * 109.47019 * 72.80115 * 13 11 10 15 15 C 1.36937 * 120.00059 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99835 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47066 * 60.00235 * 19 17 15 21 21 H 1.48496 * 109.47132 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47113 * 300.00209 * 19 17 15 23 23 C 1.47425 * 125.65138 * 179.97438 * 8 6 5 24 24 C 1.35044 * 107.92862 * 359.55228 * 4 3 2 25 25 C 1.50700 * 126.14001 * 180.28662 * 24 4 3 26 26 C 1.35376 * 107.72650 * 0.26764 * 24 4 3 27 27 Cl 1.73602 * 126.04661 * 180.02562 * 26 24 4 28 28 H 1.08994 * 109.46972 * 270.28823 * 1 2 3 29 29 H 1.08999 * 109.46996 * 30.29468 * 1 2 3 30 30 H 1.09005 * 109.46591 * 150.28525 * 1 2 3 31 31 H 1.09001 * 109.47244 * 149.69063 * 5 4 3 32 32 H 1.09007 * 109.47315 * 29.68966 * 5 4 3 33 33 H 1.09004 * 109.85762 * 59.50172 * 9 8 6 34 34 H 1.08995 * 110.00297 * 298.43119 * 9 8 6 35 35 H 1.09002 * 110.72180 * 219.45147 * 10 9 8 36 36 H 1.08997 * 110.72163 * 96.18354 * 10 9 8 37 37 H 1.08995 * 109.47360 * 192.80199 * 13 11 10 38 38 H 1.08993 * 109.47181 * 312.80623 * 13 11 10 39 39 H 0.96999 * 120.00284 * 0.02562 * 14 13 11 40 40 H 0.97005 * 120.00015 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36696 * 85.25946 * 23 8 6 42 42 H 1.08995 * 110.36608 * 323.04783 * 23 8 6 43 43 H 1.08995 * 109.47271 * 89.99511 * 25 24 4 44 44 H 1.09003 * 109.47142 * 210.00519 * 25 24 4 45 45 H 1.09008 * 109.46727 * 329.99958 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0600 0.0000 4 7 3.6089 0.6348 -0.0045 5 6 4.7897 1.5020 -0.0098 6 6 5.1938 1.7917 -1.4324 7 8 4.5584 1.3198 -2.3514 8 7 6.2620 2.5742 -1.6835 9 6 7.1211 3.2102 -0.6701 10 6 8.2251 3.9821 -1.4233 11 6 8.2620 3.2764 -2.8045 12 1 8.8664 2.3701 -2.7642 13 6 8.7717 4.2248 -3.8915 14 7 10.2130 4.4284 -3.7254 15 6 10.8932 5.2446 -4.5892 16 1 10.3671 5.7385 -5.3928 17 6 12.2587 5.4379 -4.4315 18 7 12.8997 4.8364 -3.4519 19 14 13.1865 6.5519 -5.6095 20 1 12.6201 7.9231 -5.5439 21 1 14.6211 6.5908 -5.2278 22 1 13.0558 6.0280 -6.9928 23 6 6.7661 2.9370 -3.0205 24 6 3.6150 -0.7156 0.0029 25 6 4.8361 -1.5988 0.0076 26 6 2.3274 -1.1336 0.0057 27 17 1.7892 -2.7840 0.0156 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5094 31 1 5.6096 1.0025 0.5064 32 1 4.5560 2.4372 0.4991 33 1 7.5702 2.4475 -0.0340 34 1 6.5343 3.9000 -0.0637 35 1 9.1829 3.8813 -0.9129 36 1 7.9546 5.0322 -1.5338 37 1 8.5767 3.7915 -4.8724 38 1 8.2576 5.1823 -3.8086 39 1 10.6855 3.9845 -3.0039 40 1 13.8539 4.9718 -3.3414 41 1 6.2316 3.8059 -3.4046 42 1 6.6630 2.0958 -3.7059 43 1 5.1306 -1.8061 1.0363 44 1 4.6088 -2.5357 -0.5012 45 1 5.6520 -1.0934 -0.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713364073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = 23.623042 kcal Electronic energy + Delta-G solvation = -26646.102871 eV Core-core repulsion = 22725.500711 eV Total energy + Delta-G solvation = -3920.602160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57430 -41.09964 -38.93469 -37.40114 -36.46783 -35.25162 -34.01107 -33.01830 -31.99677 -30.83930 -30.22112 -28.06394 -27.78235 -26.44328 -24.46058 -23.89725 -21.71654 -21.42312 -21.13230 -20.15762 -19.17114 -18.52942 -18.06408 -17.35885 -16.82250 -16.60039 -16.25612 -15.67185 -15.50176 -15.35405 -15.04722 -14.92678 -14.77680 -14.30961 -14.23267 -14.08290 -13.95925 -13.87077 -13.44401 -13.30220 -13.23076 -13.01571 -12.96672 -12.95213 -12.79980 -12.73712 -12.26835 -12.25423 -12.12545 -11.80690 -11.69916 -11.62405 -11.47636 -11.29947 -10.92167 -10.21952 -9.79824 -9.38363 -8.99318 -7.95212 -5.23248 0.50260 0.89585 1.34871 1.46645 1.48592 1.50572 1.56679 1.61990 1.94711 2.56270 3.19583 3.38518 3.40245 3.48500 3.60482 3.61694 3.79564 3.87660 3.99193 4.09942 4.25200 4.27008 4.29263 4.42780 4.53991 4.58825 4.61140 4.65590 4.75517 4.77947 4.81204 4.87006 4.92396 4.97613 4.99965 5.04999 5.18668 5.25230 5.39652 5.42877 5.50467 5.73505 6.27241 6.34110 6.48874 6.89445 7.34770 8.09236 8.33921 9.27694 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.001808 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.277190 B =15482.033427 C =15697.023281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.084 3.916 3 N -0.311 5.311 4 N -0.357 5.357 5 C 0.122 3.878 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.609 5.609 9 C 0.097 3.903 10 C -0.118 4.118 11 C -0.095 4.095 12 H 0.080 0.920 13 C 0.163 3.837 14 N -0.740 5.740 15 C -0.248 4.248 16 H 0.072 0.928 17 C -0.072 4.072 18 N -0.965 5.965 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.120 3.880 24 C 0.113 3.887 25 C -0.097 4.097 26 C -0.208 4.208 27 Cl -0.034 7.034 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.231 -12.359 14.753 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 N -0.133 5.133 4 N -0.139 5.139 5 C -0.002 4.002 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.343 5.343 9 C -0.024 4.024 10 C -0.156 4.156 11 C -0.115 4.115 12 H 0.098 0.902 13 C 0.037 3.963 14 N -0.383 5.383 15 C -0.379 4.379 16 H 0.090 0.910 17 C -0.265 4.265 18 N -0.616 5.616 19 Si 0.800 3.200 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.207 1.207 23 C -0.003 4.003 24 C -0.016 4.016 25 C -0.155 4.155 26 C -0.246 4.246 27 Cl -0.006 7.006 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.183 0.817 32 H 0.168 0.832 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.210 0.790 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.510 -11.301 14.158 28.122 hybrid contribution 0.939 -0.371 -0.912 1.361 sum -20.570 -11.673 13.246 27.108 Atomic orbital electron populations 1.20341 0.84125 1.04207 1.04511 1.22790 0.98695 0.88820 0.98051 1.77378 0.86756 1.22707 1.26434 1.47800 1.05032 1.03869 1.57171 1.21793 0.86097 0.98571 0.93752 1.20941 0.79240 0.77972 0.92179 1.90771 1.53939 1.53076 1.47895 1.48595 1.28280 1.48336 1.09096 1.22472 0.91541 0.97805 0.90562 1.22611 0.99147 0.99536 0.94298 1.22334 0.94128 0.98966 0.96040 0.90192 1.20648 0.84263 0.95854 0.95583 1.42438 1.03956 1.56332 1.35581 1.19557 0.91243 1.19718 1.07428 0.90963 1.25508 0.97594 1.02723 1.00633 1.69780 1.08619 1.48722 1.34453 0.85256 0.77275 0.78941 0.78534 1.20428 1.22054 1.20722 1.22069 0.93266 1.00165 0.84841 1.21234 0.97304 0.84880 0.98175 1.20681 0.91408 0.97906 1.05459 1.20478 0.92436 0.87496 1.24186 1.98297 1.89711 1.14719 1.97839 0.88417 0.90369 0.89281 0.81725 0.83164 0.88014 0.88226 0.89604 0.90695 0.96704 0.95599 0.79049 0.93943 0.91208 0.91700 0.86780 0.88937 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.31 71.24 0.73 -0.40 16 2 C 0.08 1.90 7.22 43.12 0.31 2.21 16 3 N -0.31 -8.02 12.57 -47.33 -0.60 -8.61 16 4 N -0.36 -7.78 3.10 -338.28 -1.05 -8.83 16 5 C 0.12 1.84 5.75 85.63 0.49 2.33 16 6 C 0.51 11.92 7.92 87.66 0.69 12.61 16 7 O -0.58 -19.70 16.68 -3.04 -0.05 -19.75 16 8 N -0.61 -12.86 3.34 -811.12 -2.71 -15.57 16 9 C 0.10 1.42 6.51 86.68 0.56 1.98 16 10 C -0.12 -2.63 6.37 31.78 0.20 -2.43 16 11 C -0.10 -2.66 3.05 -9.40 -0.03 -2.69 16 12 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 13 C 0.16 6.08 5.71 86.38 0.49 6.58 16 14 N -0.74 -35.56 5.55 -343.46 -1.91 -37.46 16 15 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 16 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 18 N -0.97 -56.94 13.06 21.65 0.28 -56.65 16 19 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C 0.12 3.11 6.37 86.85 0.55 3.66 16 24 C 0.11 2.29 6.94 41.40 0.29 2.57 16 25 C -0.10 -1.26 9.73 71.24 0.69 -0.57 16 26 C -0.21 -4.49 6.63 22.02 0.15 -4.35 16 27 Cl -0.03 -0.60 28.59 -2.72 -0.08 -0.68 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.20 8.01 -2.38 -0.02 1.18 16 31 H 0.17 1.09 7.66 -2.39 -0.02 1.08 16 32 H 0.15 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.07 1.78 7.91 -2.39 -0.02 1.76 16 37 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.03 0.96 7.97 -2.39 -0.02 0.94 16 39 H 0.38 18.91 7.67 -92.71 -0.71 18.20 16 40 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 41 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 42 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.21 7.91 -2.39 -0.02 1.19 16 45 H 0.08 0.99 7.73 -2.38 -0.02 0.97 16 Total: -1.00 -76.58 392.10 2.67 -73.91 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.29 Total: 21.17 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.45 Total: 5.36 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.97 Total: -127.13 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -76.58 2.67 -73.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713364073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.534 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds