Wall clock time and date at job start Sat Apr 11 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30850 * 125.89696 * 2 1 4 4 N 1.40080 * 108.22594 * 180.13613 * 3 2 1 5 5 C 1.46507 * 126.03724 * 179.88208 * 4 3 2 6 6 C 1.50702 * 109.46510 * 269.68977 * 5 4 3 7 7 O 1.21273 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99376 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.65018 * 359.95742 * 8 6 5 10 10 C 1.54327 * 107.27126 * 181.09053 * 9 8 6 11 11 C 1.55155 * 102.94065 * 22.19595 * 10 9 8 12 12 H 1.09007 * 111.03795 * 82.58410 * 11 10 9 13 13 C 1.53001 * 111.00412 * 206.41899 * 11 10 9 14 14 N 1.46490 * 109.47264 * 287.19518 * 13 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46685 * 269.99637 * 19 17 15 21 21 H 1.48494 * 109.47357 * 29.99716 * 19 17 15 22 22 H 1.48502 * 109.47120 * 150.00435 * 19 17 15 23 23 C 1.47425 * 125.64832 * 179.97438 * 8 6 5 24 24 C 1.35047 * 107.92611 * 359.61232 * 4 3 2 25 25 C 1.50697 * 126.13384 * 180.20386 * 24 4 3 26 26 C 1.35374 * 107.72668 * 0.23435 * 24 4 3 27 27 Cl 1.73594 * 126.04467 * 179.97438 * 26 24 4 28 28 H 1.09001 * 109.47496 * 270.28852 * 1 2 3 29 29 H 1.09002 * 109.47152 * 30.28551 * 1 2 3 30 30 H 1.09002 * 109.47296 * 150.28142 * 1 2 3 31 31 H 1.08991 * 109.46841 * 149.68904 * 5 4 3 32 32 H 1.09004 * 109.46847 * 29.68728 * 5 4 3 33 33 H 1.09000 * 109.88473 * 300.51310 * 9 8 6 34 34 H 1.09001 * 109.88122 * 61.52693 * 9 8 6 35 35 H 1.08996 * 110.72473 * 263.83287 * 10 9 8 36 36 H 1.09001 * 110.71926 * 140.55777 * 10 9 8 37 37 H 1.09003 * 109.46836 * 167.19226 * 13 11 10 38 38 H 1.08999 * 109.47071 * 47.20265 * 13 11 10 39 39 H 0.97000 * 120.00577 * 0.02562 * 14 13 11 40 40 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 41 41 H 1.09001 * 110.36548 * 36.99406 * 23 8 6 42 42 H 1.09001 * 110.46206 * 274.72271 * 23 8 6 43 43 H 1.08997 * 109.47314 * 90.00658 * 25 24 4 44 44 H 1.09008 * 109.47138 * 210.00273 * 25 24 4 45 45 H 1.09004 * 109.47466 * 330.00369 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 -0.0032 5 6 4.7897 1.5019 -0.0067 6 6 5.1954 1.7922 -1.4287 7 8 4.5605 1.3215 -2.3486 8 7 6.2633 2.5757 -1.6782 9 6 7.1168 3.2098 -0.6627 10 6 8.1893 4.0283 -1.4119 11 6 7.5379 4.2669 -2.7997 12 1 6.8534 5.1148 -2.7701 13 6 8.6039 4.4639 -3.8794 14 7 9.2276 5.7792 -3.7156 15 6 10.2173 6.1792 -4.5732 16 1 10.5378 5.5252 -5.3706 17 6 10.8087 7.4254 -4.4178 18 7 10.4185 8.2224 -3.4456 19 14 12.1584 7.9714 -5.5882 20 1 13.4783 7.5537 -5.0508 21 1 11.9443 7.3449 -6.9174 22 1 12.1257 9.4496 -5.7265 23 6 6.7689 2.9392 -3.0145 24 6 3.6149 -0.7157 0.0036 25 6 4.8360 -1.5988 0.0076 26 6 2.3273 -1.1336 0.0056 27 17 1.7891 -2.7840 0.0132 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3634 -0.8925 -0.5095 31 1 5.6089 1.0022 0.5102 32 1 4.5554 2.4369 0.5024 33 1 6.5181 3.8698 -0.0349 34 1 7.5927 2.4453 -0.0486 35 1 9.1114 3.4557 -1.5120 36 1 8.3754 4.9753 -0.9053 37 1 8.1398 4.4017 -4.8637 38 1 9.3632 3.6874 -3.7862 39 1 8.9401 6.3666 -2.9992 40 1 9.7174 7.9390 -2.8381 41 1 5.9397 3.0885 -3.7060 42 1 7.4411 2.1678 -3.3903 43 1 5.1308 -1.8067 1.0361 44 1 4.6086 -2.5355 -0.5015 45 1 5.6518 -1.0932 -0.5091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713364074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:52 Heat of formation + Delta-G solvation = 46.341611 kcal Electronic energy + Delta-G solvation = -26674.220490 eV Core-core repulsion = 22754.603481 eV Total energy + Delta-G solvation = -3919.617009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.82616 -40.19307 -37.90797 -36.68155 -35.04983 -34.51101 -32.72099 -32.20795 -30.52242 -30.04582 -29.07656 -27.38693 -26.67638 -24.84069 -23.21890 -22.65447 -20.94756 -20.42181 -20.23745 -19.37035 -17.76750 -17.35646 -17.19020 -16.54101 -15.86108 -15.50411 -15.11652 -14.60742 -14.45824 -14.31704 -13.93018 -13.81033 -13.69100 -13.60920 -13.43377 -13.09599 -13.06360 -12.84661 -12.68882 -12.61832 -12.48834 -12.31937 -12.06853 -11.91953 -11.53342 -11.12605 -10.89632 -10.75461 -10.72917 -10.60416 -10.49268 -10.34524 -10.05058 -9.45377 -9.24067 -8.94646 -8.89961 -8.63082 -7.07489 -6.16432 -3.16697 1.26498 1.58608 2.20962 2.23700 2.37005 2.76879 3.48506 3.53134 3.67294 3.97726 4.05291 4.10320 4.42664 4.48109 4.52851 4.55833 4.67364 4.70948 4.86348 4.91376 5.02890 5.08808 5.21447 5.27822 5.31816 5.38820 5.39580 5.52949 5.55532 5.64590 5.69942 5.79237 5.81023 5.83688 5.94460 6.11604 6.13040 6.19904 6.42479 6.55594 6.65297 7.18423 7.26229 7.75402 7.77778 8.69929 9.15980 10.02349 10.16636 11.32121 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033873 B = 0.001791 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.410677 B =15630.467943 C =15795.989867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.095 3.905 3 N -0.273 5.273 4 N -0.350 5.350 5 C 0.121 3.879 6 C 0.509 3.491 7 O -0.522 6.522 8 N -0.613 5.613 9 C 0.093 3.907 10 C -0.121 4.121 11 C -0.107 4.107 12 H 0.085 0.915 13 C 0.170 3.830 14 N -0.742 5.742 15 C -0.333 4.333 16 H 0.065 0.935 17 C -0.045 4.045 18 N -0.944 5.944 19 Si 1.083 2.917 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.115 3.885 24 C 0.116 3.884 25 C -0.097 4.097 26 C -0.187 4.187 27 Cl -0.043 7.043 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.367 0.633 40 H 0.254 0.746 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -20.773 12.940 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.094 5.094 4 N -0.131 5.131 5 C -0.004 4.004 6 C 0.295 3.705 7 O -0.397 6.397 8 N -0.348 5.348 9 C -0.030 4.030 10 C -0.158 4.158 11 C -0.127 4.127 12 H 0.103 0.897 13 C 0.042 3.958 14 N -0.388 5.388 15 C -0.464 4.464 16 H 0.083 0.917 17 C -0.243 4.243 18 N -0.589 5.589 19 Si 0.914 3.086 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.213 1.213 23 C -0.007 4.007 24 C -0.012 4.012 25 C -0.156 4.156 26 C -0.225 4.225 27 Cl -0.015 7.015 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.097 -18.763 11.894 26.311 hybrid contribution -1.034 -1.975 0.554 2.297 sum -15.131 -20.738 12.448 28.530 Atomic orbital electron populations 1.20237 0.85856 1.03878 1.03349 1.22265 0.97365 0.88838 0.98831 1.77477 0.85614 1.21564 1.24773 1.47582 1.04998 1.03295 1.57209 1.21489 0.85642 0.97180 0.96102 1.20313 0.79838 0.79168 0.91159 1.90791 1.52242 1.50839 1.45855 1.48508 1.28307 1.48701 1.09270 1.22260 0.92744 0.96644 0.91312 1.22657 0.97194 1.00513 0.95476 1.22608 0.97828 0.96334 0.95895 0.89687 1.20477 0.91815 0.89146 0.94335 1.42308 1.44584 1.14885 1.36994 1.20055 1.13820 1.02526 1.09959 0.91680 1.25796 1.03430 0.93016 1.02014 1.70868 1.31725 1.38171 1.18150 0.83189 0.75039 0.76069 0.74322 1.22281 1.22125 1.21346 1.22285 0.98171 0.96492 0.83790 1.20674 0.96321 0.84673 0.99529 1.20550 0.92685 0.98598 1.03724 1.20248 0.91995 0.86943 1.23336 1.98303 1.89762 1.15608 1.97824 0.90077 0.90359 0.90030 0.85779 0.85314 0.91106 0.91144 0.90002 0.89480 0.95898 0.95806 0.79996 0.93440 0.90281 0.90875 0.89445 0.88944 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.31 36.00 0.37 -0.24 16 2 C 0.09 1.10 7.22 -82.38 -0.59 0.51 16 3 N -0.27 -3.64 12.57 33.68 0.42 -3.21 16 4 N -0.35 -4.06 3.10 -58.27 -0.18 -4.25 16 5 C 0.12 1.08 5.74 -5.19 -0.03 1.05 16 6 C 0.51 6.36 7.92 -10.98 -0.09 6.27 16 7 O -0.52 -8.89 16.68 5.56 0.09 -8.80 16 8 N -0.61 -7.06 3.33 -170.50 -0.57 -7.63 16 9 C 0.09 0.83 6.49 -3.06 -0.02 0.81 16 10 C -0.12 -1.44 6.37 -24.90 -0.16 -1.60 16 11 C -0.11 -1.55 3.05 -88.46 -0.27 -1.82 16 12 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 13 C 0.17 3.21 5.71 -4.05 -0.02 3.19 16 14 N -0.74 -17.87 5.55 -59.91 -0.33 -18.20 16 15 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.05 -1.29 5.50 -17.43 -0.10 -1.38 16 18 N -0.94 -28.56 13.70 55.49 0.76 -27.80 16 19 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 20 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.11 1.52 6.38 -2.52 -0.02 1.51 16 24 C 0.12 1.24 6.94 -82.20 -0.57 0.67 16 25 C -0.10 -0.70 9.73 36.00 0.35 -0.35 16 26 C -0.19 -2.08 6.63 -39.97 -0.27 -2.35 16 27 Cl -0.04 -0.40 28.58 -51.86 -1.48 -1.88 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 31 H 0.12 0.65 7.66 -51.93 -0.40 0.26 16 32 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 39 H 0.37 8.93 6.50 -40.82 -0.27 8.67 16 40 H 0.25 7.51 6.77 -40.82 -0.28 7.24 16 41 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 42 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.64 7.91 -51.92 -0.41 0.23 16 45 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -36.09 390.36 -8.89 -44.97 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.84 Total: 3.52 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.56 Total: -3.08 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.10 Total: -61.09 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.09 -8.89 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713364074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.316 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds