Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30850 * 125.89696 * 2 1 4 4 N 1.40080 * 108.22594 * 180.13613 * 3 2 1 5 5 C 1.46507 * 126.03724 * 179.88208 * 4 3 2 6 6 C 1.50702 * 109.46510 * 269.68977 * 5 4 3 7 7 O 1.21273 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99376 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.65018 * 359.95742 * 8 6 5 10 10 C 1.54327 * 107.27126 * 181.09053 * 9 8 6 11 11 C 1.55155 * 102.94065 * 22.19595 * 10 9 8 12 12 H 1.09007 * 111.03795 * 82.58410 * 11 10 9 13 13 C 1.53001 * 111.00412 * 206.41899 * 11 10 9 14 14 N 1.46490 * 109.47264 * 287.19518 * 13 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46685 * 269.99637 * 19 17 15 21 21 H 1.48494 * 109.47357 * 29.99716 * 19 17 15 22 22 H 1.48502 * 109.47120 * 150.00435 * 19 17 15 23 23 C 1.47425 * 125.64832 * 179.97438 * 8 6 5 24 24 C 1.35047 * 107.92611 * 359.61232 * 4 3 2 25 25 C 1.50697 * 126.13384 * 180.20386 * 24 4 3 26 26 C 1.35374 * 107.72668 * 0.23435 * 24 4 3 27 27 Cl 1.73594 * 126.04467 * 179.97438 * 26 24 4 28 28 H 1.09001 * 109.47496 * 270.28852 * 1 2 3 29 29 H 1.09002 * 109.47152 * 30.28551 * 1 2 3 30 30 H 1.09002 * 109.47296 * 150.28142 * 1 2 3 31 31 H 1.08991 * 109.46841 * 149.68904 * 5 4 3 32 32 H 1.09004 * 109.46847 * 29.68728 * 5 4 3 33 33 H 1.09000 * 109.88473 * 300.51310 * 9 8 6 34 34 H 1.09001 * 109.88122 * 61.52693 * 9 8 6 35 35 H 1.08996 * 110.72473 * 263.83287 * 10 9 8 36 36 H 1.09001 * 110.71926 * 140.55777 * 10 9 8 37 37 H 1.09003 * 109.46836 * 167.19226 * 13 11 10 38 38 H 1.08999 * 109.47071 * 47.20265 * 13 11 10 39 39 H 0.97000 * 120.00577 * 0.02562 * 14 13 11 40 40 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 41 41 H 1.09001 * 110.36548 * 36.99406 * 23 8 6 42 42 H 1.09001 * 110.46206 * 274.72271 * 23 8 6 43 43 H 1.08997 * 109.47314 * 90.00658 * 25 24 4 44 44 H 1.09008 * 109.47138 * 210.00273 * 25 24 4 45 45 H 1.09004 * 109.47466 * 330.00369 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 -0.0032 5 6 4.7897 1.5019 -0.0067 6 6 5.1954 1.7922 -1.4287 7 8 4.5605 1.3215 -2.3486 8 7 6.2633 2.5757 -1.6782 9 6 7.1168 3.2098 -0.6627 10 6 8.1893 4.0283 -1.4119 11 6 7.5379 4.2669 -2.7997 12 1 6.8534 5.1148 -2.7701 13 6 8.6039 4.4639 -3.8794 14 7 9.2276 5.7792 -3.7156 15 6 10.2173 6.1792 -4.5732 16 1 10.5378 5.5252 -5.3706 17 6 10.8087 7.4254 -4.4178 18 7 10.4185 8.2224 -3.4456 19 14 12.1584 7.9714 -5.5882 20 1 13.4783 7.5537 -5.0508 21 1 11.9443 7.3449 -6.9174 22 1 12.1257 9.4496 -5.7265 23 6 6.7689 2.9392 -3.0145 24 6 3.6149 -0.7157 0.0036 25 6 4.8360 -1.5988 0.0076 26 6 2.3273 -1.1336 0.0056 27 17 1.7891 -2.7840 0.0132 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3634 -0.8925 -0.5095 31 1 5.6089 1.0022 0.5102 32 1 4.5554 2.4369 0.5024 33 1 6.5181 3.8698 -0.0349 34 1 7.5927 2.4453 -0.0486 35 1 9.1114 3.4557 -1.5120 36 1 8.3754 4.9753 -0.9053 37 1 8.1398 4.4017 -4.8637 38 1 9.3632 3.6874 -3.7862 39 1 8.9401 6.3666 -2.9992 40 1 9.7174 7.9390 -2.8381 41 1 5.9397 3.0885 -3.7060 42 1 7.4411 2.1678 -3.3903 43 1 5.1308 -1.8067 1.0361 44 1 4.6086 -2.5355 -0.5015 45 1 5.6518 -1.0932 -0.5091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713364074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = 22.636127 kcal Electronic energy + Delta-G solvation = -26675.248437 eV Core-core repulsion = 22754.603481 eV Total energy + Delta-G solvation = -3920.644956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60014 -41.17244 -39.02937 -37.41925 -36.79157 -35.28359 -34.15484 -33.03280 -31.91297 -30.87676 -30.21773 -28.07284 -27.70543 -26.31093 -24.62903 -24.05152 -21.73026 -21.53982 -21.16704 -20.20014 -19.39210 -18.61980 -18.08585 -17.58509 -16.75449 -16.59887 -16.26379 -15.82316 -15.69715 -15.47123 -15.12811 -15.04720 -14.88553 -14.33460 -14.26209 -14.13226 -13.99552 -13.93388 -13.46401 -13.34333 -13.24091 -13.12184 -12.97681 -12.82261 -12.76084 -12.61818 -12.27240 -12.25366 -11.92417 -11.87975 -11.73674 -11.49266 -11.37796 -11.24747 -10.94202 -10.24594 -9.85259 -9.40335 -9.12477 -8.40851 -5.35069 0.48074 0.87447 1.30175 1.44673 1.58426 1.59449 1.68999 1.83343 1.90785 2.69907 3.13409 3.36997 3.39012 3.46735 3.49288 3.52687 3.75593 3.79021 3.95834 4.06823 4.10176 4.21078 4.23671 4.29368 4.44150 4.51723 4.57893 4.63812 4.69284 4.72729 4.73288 4.85208 4.86765 4.92136 4.95691 4.98354 5.09792 5.14137 5.29075 5.40617 5.57803 5.71600 6.28546 6.46895 6.49855 6.84756 7.08230 7.98575 8.08702 9.11471 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033873 B = 0.001791 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.410677 B =15630.467943 C =15795.989867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.084 3.916 3 N -0.314 5.314 4 N -0.358 5.358 5 C 0.122 3.878 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.609 5.609 9 C 0.098 3.902 10 C -0.117 4.117 11 C -0.099 4.099 12 H 0.073 0.927 13 C 0.170 3.830 14 N -0.753 5.753 15 C -0.336 4.336 16 H 0.065 0.935 17 C -0.102 4.102 18 N -0.973 5.973 19 Si 1.129 2.871 20 H -0.282 1.282 21 H -0.276 1.276 22 H -0.294 1.294 23 C 0.122 3.878 24 C 0.113 3.887 25 C -0.096 4.096 26 C -0.208 4.208 27 Cl -0.033 7.033 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.012 0.988 38 H 0.029 0.971 39 H 0.363 0.637 40 H 0.246 0.754 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -22.234 14.417 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 N -0.135 5.135 4 N -0.139 5.139 5 C -0.002 4.002 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.343 5.343 9 C -0.024 4.024 10 C -0.155 4.155 11 C -0.119 4.119 12 H 0.091 0.909 13 C 0.043 3.957 14 N -0.397 5.397 15 C -0.468 4.468 16 H 0.083 0.917 17 C -0.294 4.294 18 N -0.621 5.621 19 Si 0.954 3.046 20 H -0.209 1.209 21 H -0.202 1.202 22 H -0.220 1.220 23 C -0.002 4.002 24 C -0.015 4.015 25 C -0.154 4.154 26 C -0.246 4.246 27 Cl -0.005 7.005 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.186 0.814 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.196 0.804 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.111 0.889 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.433 -20.256 13.395 27.752 hybrid contribution -1.272 -1.587 0.054 2.035 sum -14.705 -21.843 13.450 29.568 Atomic orbital electron populations 1.20342 0.84189 1.04185 1.04513 1.22788 0.98685 0.88875 0.98018 1.77393 0.86855 1.22794 1.26488 1.47803 1.04979 1.03925 1.57227 1.21794 0.86189 0.98535 0.93662 1.20967 0.78983 0.78150 0.92231 1.90770 1.53937 1.53038 1.47815 1.48529 1.28424 1.48382 1.08969 1.22427 0.91813 0.97629 0.90491 1.22613 0.98051 1.00938 0.93927 1.22365 0.96613 0.96621 0.96275 0.90866 1.20577 0.92767 0.86863 0.95484 1.42471 1.44284 1.16614 1.36380 1.20392 1.13962 1.02431 1.09966 0.91748 1.27171 1.05605 0.93585 1.03028 1.70968 1.32670 1.39082 1.19421 0.82596 0.73193 0.75344 0.73470 1.20881 1.20156 1.21997 1.22052 0.97408 0.95821 0.84898 1.21262 0.97360 0.84802 0.98099 1.20690 0.91321 0.97870 1.05519 1.20475 0.92443 0.87497 1.24183 1.98297 1.89717 1.14620 1.97839 0.88409 0.90493 0.89211 0.81389 0.83448 0.88868 0.87209 0.90174 0.89989 0.96965 0.95287 0.80439 0.94366 0.92167 0.90418 0.86722 0.88887 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.31 71.23 0.73 -0.43 16 2 C 0.08 1.91 7.22 43.11 0.31 2.23 16 3 N -0.31 -8.21 12.57 -47.34 -0.60 -8.80 16 4 N -0.36 -7.75 3.10 -338.27 -1.05 -8.80 16 5 C 0.12 1.82 5.74 85.63 0.49 2.32 16 6 C 0.51 11.84 7.92 87.66 0.69 12.53 16 7 O -0.58 -19.61 16.68 -3.01 -0.05 -19.66 16 8 N -0.61 -12.77 3.33 -811.74 -2.70 -15.47 16 9 C 0.10 1.40 6.49 86.73 0.56 1.96 16 10 C -0.12 -2.59 6.37 31.78 0.20 -2.39 16 11 C -0.10 -2.83 3.05 -9.40 -0.03 -2.86 16 12 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 13 C 0.17 6.44 5.71 86.38 0.49 6.94 16 14 N -0.75 -36.60 5.55 -343.47 -1.90 -38.50 16 15 C -0.34 -18.63 9.99 84.03 0.84 -17.79 16 16 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 17 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 18 N -0.97 -59.52 13.70 21.65 0.30 -59.23 16 19 Si 1.13 51.20 29.92 68.60 2.05 53.25 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 C 0.12 3.16 6.38 86.86 0.55 3.71 16 24 C 0.11 2.23 6.94 41.40 0.29 2.52 16 25 C -0.10 -1.13 9.73 71.23 0.69 -0.44 16 26 C -0.21 -4.44 6.63 22.02 0.15 -4.29 16 27 Cl -0.03 -0.57 28.58 -2.72 -0.08 -0.65 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.22 8.01 -2.39 -0.02 1.20 16 31 H 0.17 0.95 7.66 -2.39 -0.02 0.93 16 32 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.82 7.91 -2.39 -0.02 1.80 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.03 1.09 7.97 -2.39 -0.02 1.07 16 39 H 0.36 18.01 6.50 -92.71 -0.60 17.41 16 40 H 0.25 14.82 6.77 -92.71 -0.63 14.20 16 41 H 0.06 1.79 8.04 -2.39 -0.02 1.77 16 42 H 0.08 1.95 8.03 -2.39 -0.02 1.93 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 1.10 7.91 -2.38 -0.02 1.08 16 45 H 0.08 0.88 7.73 -2.38 -0.02 0.86 16 Total: -1.00 -80.40 390.36 2.96 -77.44 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.54 Total: 21.82 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.45 Total: -1.38 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -5.95 Total: -130.80 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -80.40 2.96 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713364074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.071 kcal (2) G-P(sol) polarization free energy of solvation -80.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds