Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34236 * 126.28216 * 2 1 4 4 H 0.96999 * 125.73824 * 359.96132 * 3 2 1 5 5 N 1.39929 * 108.52376 * 179.97438 * 3 2 1 6 6 C 1.30537 * 108.89503 * 359.97438 * 5 3 2 7 7 Cl 1.73597 * 126.00469 * 179.97438 * 6 5 3 8 8 C 1.38073 * 126.28061 * 179.97438 * 2 1 3 9 9 C 1.47382 * 126.42134 * 0.04993 * 8 2 1 10 10 O 1.21609 * 119.99930 * 90.00588 * 9 8 2 11 11 N 1.34772 * 120.00388 * 270.00133 * 9 8 2 12 12 C 1.46924 * 120.62882 * 359.72202 * 11 9 8 13 13 C 1.53626 * 108.54621 * 126.36824 * 12 11 9 14 14 C 1.53038 * 109.23885 * 54.85376 * 13 12 11 15 15 C 1.53004 * 109.44733 * 178.49710 * 14 13 12 16 16 N 1.46503 * 109.47219 * 295.06693 * 15 14 13 17 17 C 1.46502 * 120.00244 * 90.00022 * 16 15 14 18 18 C 1.36933 * 119.99768 * 269.99421 * 16 15 14 19 19 H 1.08000 * 119.99817 * 142.03909 * 18 16 15 20 20 C 1.38810 * 120.00252 * 322.04701 * 18 16 15 21 21 N 1.31620 * 120.00602 * 155.54293 * 20 18 16 22 22 Si 1.86801 * 120.00001 * 335.53563 * 20 18 16 23 23 H 1.48503 * 109.47006 * 95.32802 * 22 20 18 24 24 H 1.48497 * 109.47483 * 215.32627 * 22 20 18 25 25 H 1.48504 * 109.47215 * 335.33370 * 22 20 18 26 26 C 1.53034 * 109.54280 * 298.51172 * 14 13 12 27 27 C 1.46923 * 120.63295 * 180.02562 * 11 9 8 28 28 H 1.08995 * 109.47188 * 90.02351 * 1 2 3 29 29 H 1.08998 * 109.46629 * 210.02899 * 1 2 3 30 30 H 1.09001 * 109.46635 * 330.02049 * 1 2 3 31 31 H 1.09006 * 109.58749 * 246.20299 * 12 11 9 32 32 H 1.09004 * 109.58494 * 6.62467 * 12 11 9 33 33 H 1.09004 * 109.63212 * 294.86408 * 13 12 11 34 34 H 1.09002 * 109.43061 * 174.72458 * 13 12 11 35 35 H 1.09001 * 109.45799 * 58.53905 * 14 13 12 36 36 H 1.08999 * 109.46648 * 55.06171 * 15 14 13 37 37 H 1.09001 * 109.47086 * 175.06435 * 15 14 13 38 38 H 1.08998 * 109.47248 * 95.33686 * 17 16 15 39 39 H 1.08993 * 109.46840 * 215.33983 * 17 16 15 40 40 H 1.09000 * 109.46659 * 335.33834 * 17 16 15 41 41 H 0.96999 * 120.00649 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.50293 * 301.41852 * 26 14 13 43 43 H 1.08997 * 109.52671 * 181.33407 * 26 14 13 44 44 H 1.08995 * 109.58677 * 353.37475 * 27 11 9 45 45 H 1.09004 * 109.58568 * 113.66085 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6553 0.0006 6 6 3.6599 -0.6498 0.0015 7 17 5.0842 -1.6422 0.0019 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0001 10 8 1.7059 -3.1007 -1.0532 11 7 1.6846 -3.1637 1.1670 12 6 1.9037 -2.4777 2.4477 13 6 0.6322 -2.6141 3.2989 14 6 0.2719 -4.0954 3.4334 15 6 -0.9727 -4.2393 4.3117 16 7 -0.6656 -3.7884 5.6714 17 6 -0.8672 -2.3852 6.0409 18 6 -0.1903 -4.6787 6.5969 19 1 0.5668 -4.3710 7.3029 20 6 -0.6815 -5.9766 6.6276 21 7 0.0500 -6.9453 7.1364 22 14 -2.3808 -6.3486 5.9469 23 1 -2.2603 -6.8125 4.5413 24 1 -3.0205 -7.4098 6.7652 25 1 -3.2124 -5.1191 5.9927 26 6 -0.0111 -4.6812 2.0482 27 6 1.2483 -4.5666 1.1828 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 2.7457 -2.9348 2.9676 32 1 2.1124 -1.4233 2.2663 33 1 -0.1890 -2.0821 2.8186 34 1 0.8109 -2.1919 4.2878 35 1 1.1034 -4.6312 3.8914 36 1 -1.7792 -3.6319 3.9010 37 1 -1.2811 -5.2844 4.3364 38 1 -1.8451 -2.2694 6.5083 39 1 -0.0909 -2.0790 6.7420 40 1 -0.8157 -1.7632 5.1473 41 1 -0.2930 -7.8524 7.1575 42 1 -0.8262 -4.1298 1.5796 43 1 -0.2908 -5.7301 2.1464 44 1 1.0242 -4.8910 0.1666 45 1 2.0389 -5.1905 1.5996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713763961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = 55.395159 kcal Electronic energy + Delta-G solvation = -28496.389912 eV Core-core repulsion = 24577.165494 eV Total energy + Delta-G solvation = -3919.224418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90945 -39.75782 -37.67501 -37.08206 -35.61041 -33.09885 -32.87035 -31.83667 -31.25979 -30.64658 -28.12853 -27.28637 -26.00847 -23.93823 -23.12044 -22.28300 -22.08698 -20.79894 -20.08315 -18.86217 -17.98312 -16.91410 -16.57465 -15.94892 -15.55724 -15.50757 -15.30947 -14.96812 -14.41313 -14.05025 -13.88747 -13.63250 -13.50797 -13.48479 -13.31568 -12.88537 -12.76778 -12.66370 -12.33256 -12.24028 -12.01588 -11.98462 -11.73219 -11.47231 -11.11161 -11.00251 -10.84705 -10.70205 -10.60108 -10.26554 -9.99899 -9.97720 -9.78512 -9.70979 -9.51211 -9.01192 -8.58771 -8.45764 -6.79748 -6.02463 -3.41686 1.16652 1.17795 1.86542 2.48648 2.54512 3.15336 3.28834 3.45475 3.50866 4.12063 4.42276 4.51060 4.53768 4.80252 4.92732 4.98445 5.02123 5.22682 5.27029 5.32582 5.34714 5.38309 5.41691 5.52610 5.56749 5.65342 5.82254 5.93249 6.07854 6.13612 6.19917 6.21866 6.29036 6.38883 6.44499 6.59045 6.60027 6.67240 6.68064 6.84654 6.91709 7.03546 7.44368 8.04476 8.17260 8.36463 8.98471 9.70227 10.12002 11.13355 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.003217 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.773102 B = 8700.688938 C = 8927.703425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.143 3.857 3 N -0.447 5.447 4 H 0.448 0.552 5 N -0.276 5.276 6 C 0.159 3.841 7 Cl 0.022 6.978 8 C -0.262 4.262 9 C 0.596 3.404 10 O -0.537 6.537 11 N -0.594 5.594 12 C 0.109 3.891 13 C -0.120 4.120 14 C -0.105 4.105 15 C 0.146 3.854 16 N -0.610 5.610 17 C 0.121 3.879 18 C -0.270 4.270 19 H 0.077 0.923 20 C 0.039 3.961 21 N -0.897 5.897 22 Si 0.873 3.127 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.271 1.271 26 C -0.128 4.128 27 C 0.113 3.887 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.005 0.995 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 15.610 -15.127 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.011 3.989 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.101 5.101 6 C -0.033 4.033 7 Cl 0.050 6.950 8 C -0.277 4.277 9 C 0.382 3.618 10 O -0.414 6.414 11 N -0.326 5.326 12 C -0.013 4.013 13 C -0.158 4.158 14 C -0.126 4.126 15 C 0.020 3.980 16 N -0.334 5.334 17 C -0.024 4.024 18 C -0.398 4.398 19 H 0.094 0.906 20 C -0.162 4.162 21 N -0.538 5.538 22 Si 0.703 3.297 23 H -0.213 1.213 24 H -0.229 1.229 25 H -0.196 1.196 26 C -0.167 4.167 27 C -0.009 4.009 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.311 16.073 -15.589 22.635 hybrid contribution -1.307 -0.609 -0.184 1.454 sum 2.004 15.465 -15.773 22.180 Atomic orbital electron populations 1.20647 0.85598 1.05111 1.04577 1.21410 0.94880 0.85907 0.96714 1.45831 1.02994 1.08648 1.58218 0.70541 1.77159 0.96527 1.10674 1.25776 1.22551 0.88808 0.90481 1.01503 1.98429 1.35160 1.64751 1.96710 1.19742 0.91129 0.94615 1.22260 1.17140 0.76861 0.84280 0.83524 1.90771 1.51844 1.67720 1.31078 1.48087 1.65776 1.13037 1.05734 1.21901 0.99011 0.96969 0.83438 1.22052 0.95820 0.98043 0.99877 1.21742 1.02056 0.94779 0.94071 1.21169 0.93424 0.98582 0.84831 1.44023 1.77378 1.05521 1.06502 1.21169 0.97916 0.85882 0.97421 1.18739 1.16812 0.91367 1.12905 0.90584 1.25456 0.97299 0.96068 0.97367 1.69899 1.35881 1.00160 1.47841 0.86995 0.87750 0.77494 0.77452 1.21266 1.22944 1.19625 1.21957 0.96773 1.01900 0.96095 1.21686 0.96888 0.80659 1.01627 0.88907 0.88739 0.89798 0.90998 0.90700 0.92679 0.89687 0.89938 0.94706 0.92777 0.97673 0.94467 0.94731 0.92725 0.92115 0.90703 0.89266 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.25 36.01 0.37 -0.26 16 2 C 0.14 1.31 7.19 -81.60 -0.59 0.72 16 3 N -0.45 -3.61 7.28 33.86 0.25 -3.37 16 4 H 0.45 1.85 8.96 -182.73 -1.64 0.22 16 5 N -0.28 -3.16 12.64 33.18 0.42 -2.74 16 6 C 0.16 2.00 7.89 -16.90 -0.13 1.86 16 7 Cl 0.02 0.26 29.19 -51.86 -1.51 -1.25 16 8 C -0.26 -3.24 3.86 -105.04 -0.41 -3.64 16 9 C 0.60 8.54 7.05 -12.54 -0.09 8.45 16 10 O -0.54 -9.34 16.52 5.27 0.09 -9.25 16 11 N -0.59 -8.00 2.97 -173.76 -0.52 -8.52 16 12 C 0.11 1.38 6.37 -3.49 -0.02 1.36 16 13 C -0.12 -1.65 4.42 -26.39 -0.12 -1.77 16 14 C -0.11 -1.76 2.36 -90.58 -0.21 -1.97 16 15 C 0.15 2.91 4.00 -4.04 -0.02 2.89 16 16 N -0.61 -13.64 2.28 -181.12 -0.41 -14.06 16 17 C 0.12 2.26 9.58 59.85 0.57 2.83 16 18 C -0.27 -7.25 9.91 -15.06 -0.15 -7.40 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 20 C 0.04 1.09 5.26 -17.43 -0.09 1.00 16 21 N -0.90 -26.65 13.97 55.49 0.78 -25.88 16 22 Si 0.87 21.62 25.23 -169.99 -4.29 17.33 16 23 H -0.28 -6.77 6.65 56.52 0.38 -6.40 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 C -0.13 -1.86 5.36 -26.59 -0.14 -2.00 16 27 C 0.11 1.56 6.43 -3.69 -0.02 1.54 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.71 7.96 -51.93 -0.41 0.30 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.87 6.25 -51.93 -0.32 0.54 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.26 5.88 -51.93 -0.31 0.96 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.05 1.22 3.49 -51.93 -0.18 1.04 16 38 H 0.01 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.03 0.53 6.21 -51.93 -0.32 0.21 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -33.23 372.42 -8.41 -41.65 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.78 Total: -3.13 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.05 Total: 3.60 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.51 Total: -54.56 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.29 Total: 17.33 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.23 -8.41 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713763961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.043 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds