Wall clock time and date at job start Sat Apr 11 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34236 * 126.28216 * 2 1 4 4 H 0.96999 * 125.73824 * 359.96132 * 3 2 1 5 5 N 1.39929 * 108.52376 * 179.97438 * 3 2 1 6 6 C 1.30537 * 108.89503 * 359.97438 * 5 3 2 7 7 Cl 1.73597 * 126.00469 * 179.97438 * 6 5 3 8 8 C 1.38073 * 126.28061 * 179.97438 * 2 1 3 9 9 C 1.47382 * 126.42134 * 0.04993 * 8 2 1 10 10 O 1.21609 * 119.99930 * 90.00588 * 9 8 2 11 11 N 1.34772 * 120.00388 * 270.00133 * 9 8 2 12 12 C 1.46924 * 120.62882 * 359.72202 * 11 9 8 13 13 C 1.53626 * 108.54621 * 126.36824 * 12 11 9 14 14 C 1.53038 * 109.23885 * 54.85376 * 13 12 11 15 15 C 1.53004 * 109.44733 * 178.49710 * 14 13 12 16 16 N 1.46503 * 109.47219 * 295.06693 * 15 14 13 17 17 C 1.46502 * 120.00244 * 90.00022 * 16 15 14 18 18 C 1.36933 * 119.99768 * 269.99421 * 16 15 14 19 19 H 1.08000 * 119.99817 * 142.03909 * 18 16 15 20 20 C 1.38810 * 120.00252 * 322.04701 * 18 16 15 21 21 N 1.31620 * 120.00602 * 155.54293 * 20 18 16 22 22 Si 1.86801 * 120.00001 * 335.53563 * 20 18 16 23 23 H 1.48503 * 109.47006 * 95.32802 * 22 20 18 24 24 H 1.48497 * 109.47483 * 215.32627 * 22 20 18 25 25 H 1.48504 * 109.47215 * 335.33370 * 22 20 18 26 26 C 1.53034 * 109.54280 * 298.51172 * 14 13 12 27 27 C 1.46923 * 120.63295 * 180.02562 * 11 9 8 28 28 H 1.08995 * 109.47188 * 90.02351 * 1 2 3 29 29 H 1.08998 * 109.46629 * 210.02899 * 1 2 3 30 30 H 1.09001 * 109.46635 * 330.02049 * 1 2 3 31 31 H 1.09006 * 109.58749 * 246.20299 * 12 11 9 32 32 H 1.09004 * 109.58494 * 6.62467 * 12 11 9 33 33 H 1.09004 * 109.63212 * 294.86408 * 13 12 11 34 34 H 1.09002 * 109.43061 * 174.72458 * 13 12 11 35 35 H 1.09001 * 109.45799 * 58.53905 * 14 13 12 36 36 H 1.08999 * 109.46648 * 55.06171 * 15 14 13 37 37 H 1.09001 * 109.47086 * 175.06435 * 15 14 13 38 38 H 1.08998 * 109.47248 * 95.33686 * 17 16 15 39 39 H 1.08993 * 109.46840 * 215.33983 * 17 16 15 40 40 H 1.09000 * 109.46659 * 335.33834 * 17 16 15 41 41 H 0.96999 * 120.00649 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.50293 * 301.41852 * 26 14 13 43 43 H 1.08997 * 109.52671 * 181.33407 * 26 14 13 44 44 H 1.08995 * 109.58677 * 353.37475 * 27 11 9 45 45 H 1.09004 * 109.58568 * 113.66085 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6553 0.0006 6 6 3.6599 -0.6498 0.0015 7 17 5.0842 -1.6422 0.0019 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0001 10 8 1.7059 -3.1007 -1.0532 11 7 1.6846 -3.1637 1.1670 12 6 1.9037 -2.4777 2.4477 13 6 0.6322 -2.6141 3.2989 14 6 0.2719 -4.0954 3.4334 15 6 -0.9727 -4.2393 4.3117 16 7 -0.6656 -3.7884 5.6714 17 6 -0.8672 -2.3852 6.0409 18 6 -0.1903 -4.6787 6.5969 19 1 0.5668 -4.3710 7.3029 20 6 -0.6815 -5.9766 6.6276 21 7 0.0500 -6.9453 7.1364 22 14 -2.3808 -6.3486 5.9469 23 1 -2.2603 -6.8125 4.5413 24 1 -3.0205 -7.4098 6.7652 25 1 -3.2124 -5.1191 5.9927 26 6 -0.0111 -4.6812 2.0482 27 6 1.2483 -4.5666 1.1828 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 2.7457 -2.9348 2.9676 32 1 2.1124 -1.4233 2.2663 33 1 -0.1890 -2.0821 2.8186 34 1 0.8109 -2.1919 4.2878 35 1 1.1034 -4.6312 3.8914 36 1 -1.7792 -3.6319 3.9010 37 1 -1.2811 -5.2844 4.3364 38 1 -1.8451 -2.2694 6.5083 39 1 -0.0909 -2.0790 6.7420 40 1 -0.8157 -1.7632 5.1473 41 1 -0.2930 -7.8524 7.1575 42 1 -0.8262 -4.1298 1.5796 43 1 -0.2908 -5.7301 2.1464 44 1 1.0242 -4.8910 0.1666 45 1 2.0389 -5.1905 1.5996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713763961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:03 Heat of formation + Delta-G solvation = 33.396914 kcal Electronic energy + Delta-G solvation = -28497.343827 eV Core-core repulsion = 24577.165494 eV Total energy + Delta-G solvation = -3920.178333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72234 -40.86929 -39.00804 -37.97381 -37.14093 -34.36205 -33.76036 -33.44516 -32.47626 -31.70303 -29.15051 -28.35704 -27.75702 -25.22442 -24.27231 -23.28823 -23.08270 -22.42657 -21.24088 -19.87809 -18.90682 -18.58448 -17.82424 -17.23636 -16.87909 -16.39049 -16.34086 -16.08442 -15.86990 -15.33369 -15.18304 -14.92483 -14.86052 -14.61585 -14.19114 -14.10521 -14.04682 -13.69137 -13.59890 -13.32858 -13.12925 -13.02637 -12.99550 -12.82519 -12.63760 -12.33852 -12.16958 -12.08738 -11.91015 -11.82086 -11.71952 -11.26182 -11.14183 -11.02541 -10.57523 -10.55847 -9.85157 -9.68495 -8.65378 -8.17205 -5.51871 0.33959 0.44073 0.97590 1.32675 1.43602 1.43865 1.54243 1.80395 2.15375 2.45376 3.07267 3.38829 3.50881 3.62115 3.83200 3.85503 3.97258 4.07208 4.13745 4.18570 4.37317 4.45018 4.56996 4.63028 4.64326 4.74710 4.76100 4.78165 4.82444 4.85334 4.98369 5.00334 5.06422 5.12052 5.13104 5.21080 5.21809 5.32958 5.62358 5.64212 5.96731 5.99637 6.21590 6.23102 6.37107 7.06552 7.08954 7.70656 8.12079 9.03071 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.003217 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.773102 B = 8700.688938 C = 8927.703425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.167 3.833 3 N -0.426 5.426 4 H 0.467 0.533 5 N -0.293 5.293 6 C 0.147 3.853 7 Cl 0.012 6.988 8 C -0.296 4.296 9 C 0.603 3.397 10 O -0.573 6.573 11 N -0.591 5.591 12 C 0.117 3.883 13 C -0.110 4.110 14 C -0.098 4.098 15 C 0.141 3.859 16 N -0.622 5.622 17 C 0.120 3.880 18 C -0.256 4.256 19 H 0.038 0.962 20 C -0.016 4.016 21 N -0.947 5.947 22 Si 0.937 3.063 23 H -0.270 1.270 24 H -0.312 1.312 25 H -0.261 1.261 26 C -0.119 4.119 27 C 0.116 3.884 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.007 0.993 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.261 0.739 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 18.503 -16.812 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.032 3.968 3 N -0.138 5.138 4 H 0.317 0.683 5 N -0.119 5.119 6 C -0.045 4.045 7 Cl 0.040 6.960 8 C -0.312 4.312 9 C 0.390 3.610 10 O -0.452 6.452 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.148 4.148 14 C -0.119 4.119 15 C 0.016 3.984 16 N -0.346 5.346 17 C -0.024 4.024 18 C -0.386 4.386 19 H 0.056 0.944 20 C -0.213 4.213 21 N -0.591 5.591 22 Si 0.765 3.235 23 H -0.197 1.197 24 H -0.241 1.241 25 H -0.186 1.186 26 C -0.158 4.158 27 C -0.006 4.006 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.251 19.040 -17.286 25.747 hybrid contribution -0.617 -1.388 0.351 1.559 sum 0.634 17.652 -16.935 24.470 Atomic orbital electron populations 1.20837 0.83028 1.06414 1.05718 1.21795 0.96068 0.84951 0.93939 1.45848 1.01795 1.09555 1.56559 0.68256 1.77103 0.98389 1.10157 1.26247 1.22615 0.88710 0.90868 1.02347 1.98418 1.35732 1.65108 1.96786 1.19682 0.91658 0.94316 1.25502 1.17352 0.75860 0.84920 0.82880 1.90748 1.53467 1.68777 1.32255 1.48101 1.65380 1.12763 1.05997 1.21839 0.98149 0.97798 0.82709 1.21952 0.97084 0.95793 0.99966 1.21547 0.99194 0.96754 0.94375 1.21267 0.95519 0.97517 0.84086 1.44147 1.77308 1.06331 1.06824 1.21288 0.97731 0.84074 0.99303 1.18634 1.15302 0.92114 1.12596 0.94421 1.26021 1.00425 0.96029 0.98778 1.70025 1.37596 1.00548 1.50963 0.85960 0.83037 0.77170 0.77286 1.19733 1.24133 1.18576 1.21860 0.97523 1.01614 0.94801 1.21597 0.96544 0.81127 1.01340 0.87749 0.89532 0.86313 0.92046 0.88935 0.90122 0.90424 0.93731 0.91745 0.95411 0.97495 0.94891 0.90701 0.92983 0.90320 0.91425 0.89326 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.25 71.24 0.73 -0.06 16 2 C 0.17 2.46 7.19 42.15 0.30 2.76 16 3 N -0.43 -5.41 7.28 -46.79 -0.34 -5.75 16 4 H 0.47 1.95 8.96 -213.43 -1.91 0.04 16 5 N -0.29 -6.11 12.64 -48.95 -0.62 -6.73 16 6 C 0.15 3.48 7.89 85.66 0.68 4.16 16 7 Cl 0.01 0.28 29.19 -2.72 -0.08 0.20 16 8 C -0.30 -6.70 3.86 -20.13 -0.08 -6.77 16 9 C 0.60 16.36 7.05 86.65 0.61 16.98 16 10 O -0.57 -19.44 16.52 -4.06 -0.07 -19.51 16 11 N -0.59 -15.03 2.97 -821.90 -2.44 -17.46 16 12 C 0.12 2.74 6.37 86.51 0.55 3.29 16 13 C -0.11 -2.72 4.42 30.82 0.14 -2.58 16 14 C -0.10 -3.12 2.36 -10.77 -0.03 -3.15 16 15 C 0.14 5.31 4.00 86.38 0.35 5.65 16 16 N -0.62 -26.98 2.28 -726.93 -1.66 -28.64 16 17 C 0.12 4.15 9.58 127.77 1.22 5.38 16 18 C -0.26 -14.02 9.91 84.03 0.83 -13.18 16 19 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 20 C -0.02 -0.90 5.26 84.86 0.45 -0.46 16 21 N -0.95 -58.27 13.97 21.65 0.30 -57.97 16 22 Si 0.94 44.91 25.23 68.60 1.73 46.64 16 23 H -0.27 -12.20 6.65 99.48 0.66 -11.54 16 24 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.12 -3.25 5.36 30.69 0.16 -3.08 16 27 C 0.12 3.10 6.43 86.38 0.56 3.66 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.90 7.96 -2.39 -0.02 0.88 16 30 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.09 1.89 6.25 -2.38 -0.01 1.87 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.08 2.08 5.88 -2.39 -0.01 2.06 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 37 H 0.03 1.20 3.49 -2.39 -0.01 1.19 16 38 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 40 H 0.07 1.97 6.21 -2.39 -0.01 1.96 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.09 2.42 7.00 -2.39 -0.02 2.40 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.64 372.42 2.37 -72.27 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -0.93 Total: 4.35 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.47 Total: 12.58 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.75 Total: -116.54 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.73 Total: 46.64 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -74.64 2.37 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713763961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.671 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds