Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35459 * 126.43711 * 2 1 4 4 Cl 1.73599 * 127.23608 * 359.97438 * 3 2 1 5 5 C 1.41543 * 105.52371 * 180.14044 * 3 2 1 6 6 C 1.47673 * 126.46016 * 179.84553 * 5 3 2 7 7 O 1.21575 * 120.00003 * 353.64431 * 6 5 3 8 8 N 1.34772 * 119.99831 * 173.64443 * 6 5 3 9 9 C 1.46926 * 120.63263 * 353.05835 * 8 6 5 10 10 C 1.53192 * 108.77458 * 233.58348 * 9 8 6 11 11 C 1.53039 * 109.33868 * 305.37850 * 10 9 8 12 12 C 1.53041 * 109.53952 * 61.31955 * 11 10 9 13 13 H 1.09003 * 109.49691 * 58.64586 * 12 11 10 14 14 C 1.52996 * 109.50151 * 178.71377 * 12 11 10 15 15 N 1.46491 * 109.47378 * 184.93500 * 14 12 11 16 16 C 1.36939 * 120.00260 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99695 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00067 * 179.72523 * 16 15 14 19 19 N 1.31614 * 120.00334 * 0.27486 * 18 16 15 20 20 Si 1.86807 * 119.99658 * 180.27484 * 18 16 15 21 21 H 1.48496 * 109.47273 * 60.00109 * 20 18 16 22 22 H 1.48505 * 109.46779 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47151 * 299.99781 * 20 18 16 24 24 C 1.46931 * 120.62985 * 173.02920 * 8 6 5 25 25 N 1.31823 * 107.07906 * 359.57585 * 5 3 2 26 26 N 1.28468 * 110.13481 * 0.26941 * 25 5 3 27 27 C 1.46502 * 124.93614 * 180.02562 * 26 25 5 28 28 H 1.08999 * 109.47261 * 270.32734 * 1 2 3 29 29 H 1.08998 * 109.47400 * 30.32686 * 1 2 3 30 30 H 1.09005 * 109.47160 * 150.32830 * 1 2 3 31 31 H 1.08998 * 109.58696 * 353.37461 * 9 8 6 32 32 H 1.09006 * 109.58815 * 113.65335 * 9 8 6 33 33 H 1.09001 * 109.49454 * 65.31567 * 10 9 8 34 34 H 1.09005 * 109.49557 * 185.37953 * 10 9 8 35 35 H 1.08996 * 109.43741 * 301.30951 * 11 10 9 36 36 H 1.09003 * 109.48166 * 181.35128 * 11 10 9 37 37 H 1.08998 * 109.46668 * 64.92963 * 14 12 11 38 38 H 1.09000 * 109.46763 * 304.93678 * 14 12 11 39 39 H 0.96996 * 120.00324 * 359.97438 * 15 14 12 40 40 H 0.96996 * 120.00561 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.58268 * 6.63186 * 24 8 6 42 42 H 1.08997 * 109.70527 * 246.27646 * 24 8 6 43 43 H 1.08993 * 109.47450 * 90.02086 * 27 26 25 44 44 H 1.08998 * 109.47032 * 210.01997 * 27 26 25 45 45 H 1.09002 * 109.46738 * 330.01797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7558 -0.0006 5 6 3.6337 0.5845 -0.0033 6 6 4.8774 1.3807 -0.0078 7 8 4.8248 2.5896 -0.1255 8 7 6.0707 0.7672 0.1185 9 6 6.1460 -0.6703 0.4129 10 6 7.0304 -0.8752 1.6468 11 6 8.3885 -0.2096 1.4131 12 6 8.1924 1.2935 1.2028 13 1 7.7021 1.7222 2.0769 14 6 9.5534 1.9629 1.0011 15 7 9.3760 3.4146 0.9177 16 6 10.4627 4.2279 0.7362 17 1 11.4506 3.7990 0.6550 18 6 10.2940 5.6030 0.6514 19 7 9.0902 6.1258 0.7508 20 14 11.7756 6.7118 0.3961 21 1 12.4482 6.3536 -0.8784 22 1 11.3305 8.1274 0.3395 23 1 12.7257 6.5358 1.5237 24 6 7.3212 1.5231 -0.0361 25 7 3.5456 -0.7307 0.0042 26 7 2.3125 -1.0913 0.0062 27 6 1.8444 -2.4795 0.0147 28 1 -0.3634 0.0059 1.0276 29 1 -0.3634 0.8870 -0.5189 30 1 -0.3634 -0.8929 -0.5087 31 1 5.1459 -1.0553 0.6121 32 1 6.5767 -1.1958 -0.4394 33 1 6.5508 -0.4266 2.5167 34 1 7.1725 -1.9421 1.8194 35 1 8.8569 -0.6419 0.5289 36 1 9.0283 -0.3746 2.2801 37 1 10.0043 1.5982 0.0783 38 1 10.2039 1.7240 1.8425 39 1 8.4888 3.7998 0.9902 40 1 8.9722 7.0867 0.6912 41 1 7.0964 2.5853 -0.1331 42 1 7.8511 1.1791 -0.9244 43 1 1.7278 -2.8173 1.0444 44 1 0.8853 -2.5427 -0.4992 45 1 2.5720 -3.1114 -0.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714084340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = 33.383107 kcal Electronic energy + Delta-G solvation = -27733.144012 eV Core-core repulsion = 23812.965080 eV Total energy + Delta-G solvation = -3920.178932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.89231 -41.06106 -38.80417 -37.54568 -36.61910 -34.94200 -34.12827 -33.51129 -33.08427 -31.48367 -28.81102 -28.21430 -27.04946 -26.48432 -24.84952 -23.72967 -22.68683 -21.97224 -21.27179 -20.04023 -19.13840 -18.13895 -17.73730 -17.60201 -16.95272 -16.68610 -16.25849 -15.80241 -15.72285 -15.39415 -15.31630 -15.06147 -14.54760 -14.27880 -14.19010 -14.15328 -14.04367 -13.75925 -13.68651 -13.47329 -13.18314 -13.01824 -12.89509 -12.82358 -12.73225 -12.42664 -12.20800 -12.00496 -11.91949 -11.85471 -11.71836 -11.41003 -11.31407 -10.94270 -10.85187 -10.23213 -9.80944 -9.60557 -9.00685 -7.92941 -5.24140 0.30336 0.74773 0.93095 1.44790 1.49879 1.56086 1.59681 1.99034 2.17708 2.56204 3.16719 3.39231 3.49698 3.64106 3.75266 3.88952 3.95225 4.04329 4.12750 4.22265 4.32423 4.33857 4.41163 4.48112 4.59822 4.66463 4.71945 4.76334 4.77598 4.80890 4.85260 4.91898 4.97399 5.03583 5.09640 5.12369 5.23368 5.33493 5.46581 5.50085 5.53015 5.75767 6.26781 6.32272 6.65136 7.07927 7.32077 8.08839 8.31384 9.30382 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.002924 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.538629 B = 9572.625104 C =11197.863050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.048 3.952 3 C -0.140 4.140 4 Cl -0.027 7.027 5 C -0.021 4.021 6 C 0.581 3.419 7 O -0.562 6.562 8 N -0.596 5.596 9 C 0.084 3.916 10 C -0.124 4.124 11 C -0.105 4.105 12 C -0.094 4.094 13 H 0.048 0.952 14 C 0.160 3.840 15 N -0.749 5.749 16 C -0.247 4.247 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.979 3.021 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.129 3.871 25 N -0.242 5.242 26 N -0.268 5.268 27 C 0.070 3.930 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.130 0.870 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 -27.852 -0.841 34.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.177 4.177 4 Cl 0.002 6.998 5 C -0.180 4.180 6 C 0.368 3.632 7 O -0.439 6.439 8 N -0.328 5.328 9 C -0.038 4.038 10 C -0.162 4.162 11 C -0.143 4.143 12 C -0.114 4.114 13 H 0.067 0.933 14 C 0.033 3.967 15 N -0.392 5.392 16 C -0.379 4.379 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.807 3.193 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.200 1.200 24 C 0.006 3.994 25 N -0.079 5.079 26 N -0.056 5.056 27 C -0.067 4.067 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.148 0.852 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.408 -28.176 -0.930 34.803 hybrid contribution 0.227 2.558 -0.107 2.570 sum -20.182 -25.618 -1.037 32.629 Atomic orbital electron populations 1.20639 0.82437 1.05931 1.05318 1.21635 0.97048 0.84558 1.04659 1.20815 0.92497 0.88128 1.16283 1.98353 1.90747 1.13435 1.97284 1.21516 0.93479 0.90467 1.12517 1.17465 0.82750 0.86143 0.76885 1.90864 1.86675 1.14914 1.51439 1.48055 1.04340 1.11462 1.68957 1.22690 1.04579 0.78162 0.98348 1.21895 0.94731 1.02548 0.97014 1.21514 0.98052 0.91461 1.03253 1.21540 0.95023 0.98066 0.96751 0.93325 1.20827 0.94728 0.82995 0.98150 1.42692 1.06602 1.01967 1.87935 1.19651 0.88973 0.88922 1.40348 0.90170 1.25703 0.99415 0.98528 1.03676 1.69876 1.22564 1.10943 1.58945 0.85130 0.78466 0.77263 0.78391 1.20118 1.22362 1.19990 1.21454 0.83539 0.96261 0.98098 1.73373 1.02741 1.11821 1.19997 1.46087 1.01806 1.09184 1.48550 1.22842 1.03649 0.73308 1.06914 0.88107 0.89649 0.86946 0.85300 0.90117 0.93095 0.87080 0.90151 0.90393 0.95354 0.95354 0.79821 0.94137 0.92844 0.90727 0.87163 0.85155 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 9.99 71.23 0.71 0.12 16 2 C 0.05 0.80 6.94 41.33 0.29 1.09 16 3 C -0.14 -3.83 6.79 22.44 0.15 -3.68 16 4 Cl -0.03 -0.81 27.95 -2.72 -0.08 -0.89 16 5 C -0.02 -0.66 6.83 42.45 0.29 -0.37 16 6 C 0.58 22.48 7.69 86.74 0.67 23.15 16 7 O -0.56 -27.16 15.32 -3.95 -0.06 -27.22 16 8 N -0.60 -20.21 2.97 -822.49 -2.44 -22.65 16 9 C 0.08 1.97 6.12 86.36 0.53 2.50 16 10 C -0.12 -2.57 6.08 30.67 0.19 -2.39 16 11 C -0.10 -2.60 5.17 30.62 0.16 -2.44 16 12 C -0.09 -3.39 2.37 -10.72 -0.03 -3.42 16 13 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 14 C 0.16 6.82 5.65 86.38 0.49 7.31 16 15 N -0.75 -41.85 5.38 -343.48 -1.85 -43.70 16 16 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 17 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 18 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 19 N -0.97 -65.07 13.06 21.65 0.28 -64.78 16 20 Si 0.98 49.02 29.55 68.60 2.03 51.05 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.13 5.01 5.53 86.36 0.48 5.49 16 25 N -0.24 -5.35 8.43 -48.17 -0.41 -5.76 16 26 N -0.27 -3.83 3.72 -355.39 -1.32 -5.15 16 27 C 0.07 0.10 11.12 127.77 1.42 1.52 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 30 H 0.11 -0.04 7.03 -2.38 -0.02 -0.05 16 31 H 0.13 2.82 4.15 -30.04 -0.12 2.70 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.37 22.78 6.89 -92.71 -0.64 22.14 16 40 H 0.25 16.21 8.31 -92.71 -0.77 15.44 16 41 H 0.05 2.64 6.20 -2.38 -0.01 2.62 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.13 -0.62 6.98 -2.39 -0.02 -0.64 16 45 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -88.48 376.60 3.07 -85.42 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.26 Total: 23.32 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.65 Total: 10.37 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -5.74 Total: -142.04 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.22 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -88.48 3.07 -85.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714084340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.799 kcal (2) G-P(sol) polarization free energy of solvation -88.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds