Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30852 * 125.89500 * 2 1 4 4 N 1.40082 * 108.22442 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03654 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46580 * 90.02805 * 5 4 3 7 7 O 1.21282 * 120.00188 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99842 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00175 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47656 * 173.91935 * 9 8 6 11 11 H 1.09002 * 109.99465 * 61.68987 * 10 9 8 12 12 C 1.54314 * 109.77748 * 182.84708 * 10 9 8 13 13 C 1.55160 * 102.86339 * 141.88455 * 12 10 9 14 14 C 1.54910 * 101.58059 * 324.30427 * 13 12 10 15 15 N 1.47025 * 109.87781 * 300.59759 * 10 9 8 16 16 C 1.36934 * 125.65048 * 61.67976 * 15 10 9 17 17 H 1.07995 * 120.00198 * 28.72218 * 16 15 10 18 18 C 1.38805 * 119.99886 * 208.72907 * 16 15 10 19 19 N 1.31624 * 120.00191 * 188.16378 * 18 16 15 20 20 Si 1.86805 * 120.00065 * 8.16500 * 18 16 15 21 21 H 1.48502 * 109.47147 * 174.58013 * 20 18 16 22 22 H 1.48496 * 109.47014 * 54.58209 * 20 18 16 23 23 H 1.48503 * 109.47052 * 294.58000 * 20 18 16 24 24 C 1.35043 * 107.92723 * 0.26157 * 4 3 2 25 25 C 1.50697 * 126.13589 * 179.71735 * 24 4 3 26 26 C 1.35380 * 107.72865 * 359.57605 * 24 4 3 27 27 Cl 1.73593 * 126.04799 * 180.16416 * 26 24 4 28 28 H 1.09000 * 109.47466 * 90.02747 * 1 2 3 29 29 H 1.09003 * 109.47294 * 210.02894 * 1 2 3 30 30 H 1.09004 * 109.47325 * 330.02686 * 1 2 3 31 31 H 1.09003 * 109.46974 * 330.03142 * 5 4 3 32 32 H 1.08998 * 109.47215 * 210.02643 * 5 4 3 33 33 H 0.96997 * 119.99901 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.47176 * 53.91649 * 9 8 6 35 35 H 1.09001 * 109.47053 * 293.91983 * 9 8 6 36 36 H 1.08997 * 110.92471 * 23.46967 * 12 10 9 37 37 H 1.09000 * 110.74332 * 260.21540 * 12 10 9 38 38 H 1.08996 * 111.00390 * 206.22928 * 13 12 10 39 39 H 1.08997 * 111.00124 * 82.37532 * 13 12 10 40 40 H 1.08996 * 110.36640 * 278.16914 * 14 13 12 41 41 H 1.08996 * 110.36629 * 155.84649 * 14 13 12 42 42 H 0.97001 * 119.99333 * 4.73440 * 19 18 16 43 43 H 1.09003 * 109.47521 * 89.99964 * 25 24 4 44 44 H 1.09004 * 109.47345 * 209.99912 * 25 24 4 45 45 H 1.08996 * 109.47170 * 329.99558 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 0.0006 5 6 4.7897 1.5020 0.0003 6 6 5.1946 1.7997 1.4210 7 8 4.5596 1.3330 2.3430 8 7 6.2623 2.5845 1.6671 9 6 6.6563 2.8734 3.0482 10 6 7.9733 3.6520 3.0507 11 1 7.8449 4.6034 2.5343 12 6 8.4316 3.8981 4.5035 13 6 9.9710 3.7249 4.4141 14 6 10.0961 2.5933 3.3636 15 7 9.0224 2.8619 2.3897 16 6 9.0075 2.4491 1.0842 17 1 8.4834 3.0304 0.3400 18 6 9.6658 1.2835 0.7173 19 7 9.7896 0.9701 -0.5551 20 14 10.3762 0.1595 2.0294 21 1 10.9074 -1.0719 1.3917 22 1 9.3116 -0.2048 2.9984 23 1 11.4743 0.8616 2.7411 24 6 3.6149 -0.7156 -0.0049 25 6 4.8360 -1.5988 -0.0124 26 6 2.3273 -1.1336 0.0007 27 17 1.7891 -2.7840 0.0010 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.5557 2.4343 -0.5138 32 1 5.6093 0.9996 -0.5134 33 1 6.7703 2.9574 0.9297 34 1 6.7862 1.9379 3.5923 35 1 5.8811 3.4693 3.5300 36 1 7.9990 3.1597 5.1785 37 1 8.1751 4.9081 4.8234 38 1 10.3856 3.4151 5.3733 39 1 10.4472 4.6398 4.0615 40 1 9.9474 1.6212 3.8337 41 1 11.0699 2.6347 2.8757 42 1 9.4820 1.5862 -1.2383 43 1 5.1337 -1.8159 1.0135 44 1 4.6072 -2.5308 -0.5293 45 1 5.6503 -1.0886 -0.5268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714623525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = 54.408451 kcal Electronic energy + Delta-G solvation = -28109.817980 eV Core-core repulsion = 24190.550775 eV Total energy + Delta-G solvation = -3919.267204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.39306 -39.30223 -37.97548 -36.33761 -34.17738 -33.98079 -32.94083 -31.89800 -30.25144 -29.99799 -29.18238 -26.93905 -26.23793 -24.66429 -23.41225 -21.35132 -20.54539 -20.20180 -19.77556 -19.19484 -17.81500 -16.89845 -16.88888 -15.91025 -15.30806 -15.23501 -15.09944 -14.90781 -14.29506 -13.93753 -13.58398 -13.47549 -13.39652 -13.25457 -13.19973 -12.97297 -12.44318 -12.43282 -12.31107 -12.12279 -11.90942 -11.78217 -11.72078 -11.43080 -11.19688 -11.17533 -11.07315 -10.78587 -10.55715 -10.37815 -10.07313 -9.77076 -9.54363 -9.26698 -9.01223 -8.86074 -8.49307 -8.22721 -7.15237 -6.50996 -3.57960 1.72181 2.00178 2.59454 2.78305 2.91863 3.31099 3.42122 3.58999 3.65228 4.44452 4.51938 4.55515 4.81981 4.89029 5.01311 5.10714 5.12801 5.13871 5.18504 5.31052 5.32303 5.45169 5.54380 5.61502 5.64747 5.71640 5.77497 5.80541 5.94519 6.00189 6.01693 6.07745 6.15280 6.19959 6.29680 6.47218 6.53628 6.65704 6.72540 6.83491 6.94424 7.57361 7.65638 7.97550 8.12274 8.58224 8.77824 9.32160 10.07238 10.94837 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003316 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.687605 B = 8441.329002 C = 9393.071051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.089 3.911 3 N -0.278 5.278 4 N -0.341 5.341 5 C 0.114 3.886 6 C 0.494 3.506 7 O -0.543 6.543 8 N -0.693 5.693 9 C 0.118 3.882 10 C 0.145 3.855 11 H 0.045 0.955 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.108 3.892 15 N -0.604 5.604 16 C -0.324 4.324 17 H 0.068 0.932 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 1.061 2.939 21 H -0.299 1.299 22 H -0.292 1.292 23 H -0.284 1.284 24 C 0.125 3.875 25 C -0.101 4.101 26 C -0.194 4.194 27 Cl -0.049 7.049 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.263 0.737 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 0.232 2.132 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 N -0.100 5.100 4 N -0.122 5.122 5 C -0.012 4.012 6 C 0.278 3.722 7 O -0.421 6.421 8 N -0.346 5.346 9 C -0.008 4.008 10 C 0.037 3.963 11 H 0.063 0.937 12 C -0.163 4.163 13 C -0.170 4.170 14 C -0.017 4.017 15 N -0.330 5.330 16 C -0.451 4.451 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.559 5.559 20 Si 0.893 3.107 21 H -0.227 1.227 22 H -0.219 1.219 23 H -0.211 1.211 24 C -0.004 4.004 25 C -0.159 4.159 26 C -0.232 4.232 27 Cl -0.021 7.021 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.872 -0.314 2.901 10.294 hybrid contribution -0.428 0.663 -0.509 0.939 sum -10.300 0.349 2.392 10.579 Atomic orbital electron populations 1.20186 0.86187 1.03556 1.03075 1.22169 0.97130 0.88960 0.99521 1.77393 0.85883 1.21660 1.25051 1.47596 1.04891 1.03412 1.56311 1.21584 0.85515 0.96838 0.97218 1.20515 0.81363 0.79765 0.90595 1.90712 1.53949 1.51939 1.45516 1.45989 1.28655 1.49672 1.10299 1.21926 0.96409 1.00038 0.82377 1.21320 0.88172 0.94296 0.92499 0.93740 1.22521 0.96418 1.01193 0.96119 1.22738 0.95572 0.99716 0.98976 1.22180 0.93460 0.95204 0.90816 1.44820 1.15549 1.64325 1.08329 1.19834 1.36923 1.06573 0.81816 0.91420 1.26116 0.98124 0.95837 1.00413 1.70951 1.47480 1.38233 0.99220 0.83905 0.76547 0.76014 0.74263 1.22714 1.21916 1.21149 1.20735 0.96284 0.84795 0.98578 1.20596 0.92685 0.98184 1.04443 1.20177 0.91985 0.86577 1.24449 1.98282 1.89770 1.16093 1.97921 0.90330 0.90239 0.90621 0.85878 0.85264 0.74971 0.91869 0.93049 0.91314 0.91414 0.91634 0.91380 0.95798 0.92129 0.92733 0.89283 0.89227 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.31 36.00 0.37 -0.41 16 2 C 0.09 1.36 7.22 -82.38 -0.59 0.77 16 3 N -0.28 -4.77 12.57 33.69 0.42 -4.35 16 4 N -0.34 -5.72 3.10 -58.27 -0.18 -5.90 16 5 C 0.11 1.74 6.73 -5.19 -0.03 1.71 16 6 C 0.49 9.13 7.90 -10.98 -0.09 9.05 16 7 O -0.54 -11.96 16.42 5.56 0.09 -11.87 16 8 N -0.69 -12.48 4.81 -60.29 -0.29 -12.77 16 9 C 0.12 2.12 5.21 -4.04 -0.02 2.10 16 10 C 0.14 2.53 3.38 -66.96 -0.23 2.30 16 11 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.12 -1.80 6.47 -24.90 -0.16 -1.96 16 13 C -0.13 -1.99 7.08 -24.58 -0.17 -2.17 16 14 C 0.11 2.12 4.51 -2.53 -0.01 2.11 16 15 N -0.60 -12.74 2.87 -162.58 -0.47 -13.21 16 16 C -0.32 -7.75 8.51 -15.06 -0.13 -7.88 16 17 H 0.07 1.65 6.77 -52.49 -0.36 1.30 16 18 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 19 N -0.92 -25.42 13.70 55.49 0.76 -24.65 16 20 Si 1.06 24.86 24.70 -169.99 -4.20 20.66 16 21 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -6.86 7.04 56.52 0.40 -6.46 16 23 H -0.28 -6.15 5.59 56.52 0.32 -5.83 16 24 C 0.13 2.00 6.94 -82.20 -0.57 1.43 16 25 C -0.10 -1.41 9.94 36.00 0.36 -1.06 16 26 C -0.19 -2.97 6.63 -39.97 -0.27 -3.23 16 27 Cl -0.05 -0.63 28.59 -51.86 -1.48 -2.11 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.13 1.83 7.04 -51.93 -0.37 1.47 16 33 H 0.41 7.31 5.81 -40.82 -0.24 7.07 16 34 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.50 5.44 -51.93 -0.28 0.22 16 41 H 0.06 1.26 6.59 -51.93 -0.34 0.92 16 42 H 0.26 7.10 8.73 -40.82 -0.36 6.74 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 45 H 0.08 1.12 7.08 -51.93 -0.37 0.75 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -31.39 375.43 -7.98 -39.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.65 Total: 6.59 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.64 Total: 2.60 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.25 Total: -60.89 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.20 Total: 20.66 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.39 -7.98 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.772 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds