Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30852 * 125.89500 * 2 1 4 4 N 1.40082 * 108.22442 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03654 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46580 * 90.02805 * 5 4 3 7 7 O 1.21282 * 120.00188 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99842 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00175 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47656 * 173.91935 * 9 8 6 11 11 H 1.09002 * 109.99465 * 61.68987 * 10 9 8 12 12 C 1.54314 * 109.77748 * 182.84708 * 10 9 8 13 13 C 1.55160 * 102.86339 * 141.88455 * 12 10 9 14 14 C 1.54910 * 101.58059 * 324.30427 * 13 12 10 15 15 N 1.47025 * 109.87781 * 300.59759 * 10 9 8 16 16 C 1.36934 * 125.65048 * 61.67976 * 15 10 9 17 17 H 1.07995 * 120.00198 * 28.72218 * 16 15 10 18 18 C 1.38805 * 119.99886 * 208.72907 * 16 15 10 19 19 N 1.31624 * 120.00191 * 188.16378 * 18 16 15 20 20 Si 1.86805 * 120.00065 * 8.16500 * 18 16 15 21 21 H 1.48502 * 109.47147 * 174.58013 * 20 18 16 22 22 H 1.48496 * 109.47014 * 54.58209 * 20 18 16 23 23 H 1.48503 * 109.47052 * 294.58000 * 20 18 16 24 24 C 1.35043 * 107.92723 * 0.26157 * 4 3 2 25 25 C 1.50697 * 126.13589 * 179.71735 * 24 4 3 26 26 C 1.35380 * 107.72865 * 359.57605 * 24 4 3 27 27 Cl 1.73593 * 126.04799 * 180.16416 * 26 24 4 28 28 H 1.09000 * 109.47466 * 90.02747 * 1 2 3 29 29 H 1.09003 * 109.47294 * 210.02894 * 1 2 3 30 30 H 1.09004 * 109.47325 * 330.02686 * 1 2 3 31 31 H 1.09003 * 109.46974 * 330.03142 * 5 4 3 32 32 H 1.08998 * 109.47215 * 210.02643 * 5 4 3 33 33 H 0.96997 * 119.99901 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.47176 * 53.91649 * 9 8 6 35 35 H 1.09001 * 109.47053 * 293.91983 * 9 8 6 36 36 H 1.08997 * 110.92471 * 23.46967 * 12 10 9 37 37 H 1.09000 * 110.74332 * 260.21540 * 12 10 9 38 38 H 1.08996 * 111.00390 * 206.22928 * 13 12 10 39 39 H 1.08997 * 111.00124 * 82.37532 * 13 12 10 40 40 H 1.08996 * 110.36640 * 278.16914 * 14 13 12 41 41 H 1.08996 * 110.36629 * 155.84649 * 14 13 12 42 42 H 0.97001 * 119.99333 * 4.73440 * 19 18 16 43 43 H 1.09003 * 109.47521 * 89.99964 * 25 24 4 44 44 H 1.09004 * 109.47345 * 209.99912 * 25 24 4 45 45 H 1.08996 * 109.47170 * 329.99558 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 0.0006 5 6 4.7897 1.5020 0.0003 6 6 5.1946 1.7997 1.4210 7 8 4.5596 1.3330 2.3430 8 7 6.2623 2.5845 1.6671 9 6 6.6563 2.8734 3.0482 10 6 7.9733 3.6520 3.0507 11 1 7.8449 4.6034 2.5343 12 6 8.4316 3.8981 4.5035 13 6 9.9710 3.7249 4.4141 14 6 10.0961 2.5933 3.3636 15 7 9.0224 2.8619 2.3897 16 6 9.0075 2.4491 1.0842 17 1 8.4834 3.0304 0.3400 18 6 9.6658 1.2835 0.7173 19 7 9.7896 0.9701 -0.5551 20 14 10.3762 0.1595 2.0294 21 1 10.9074 -1.0719 1.3917 22 1 9.3116 -0.2048 2.9984 23 1 11.4743 0.8616 2.7411 24 6 3.6149 -0.7156 -0.0049 25 6 4.8360 -1.5988 -0.0124 26 6 2.3273 -1.1336 0.0007 27 17 1.7891 -2.7840 0.0010 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.5557 2.4343 -0.5138 32 1 5.6093 0.9996 -0.5134 33 1 6.7703 2.9574 0.9297 34 1 6.7862 1.9379 3.5923 35 1 5.8811 3.4693 3.5300 36 1 7.9990 3.1597 5.1785 37 1 8.1751 4.9081 4.8234 38 1 10.3856 3.4151 5.3733 39 1 10.4472 4.6398 4.0615 40 1 9.9474 1.6212 3.8337 41 1 11.0699 2.6347 2.8757 42 1 9.4820 1.5862 -1.2383 43 1 5.1337 -1.8159 1.0135 44 1 4.6072 -2.5308 -0.5293 45 1 5.6503 -1.0886 -0.5268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714623525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = 34.128757 kcal Electronic energy + Delta-G solvation = -28110.697373 eV Core-core repulsion = 24190.550775 eV Total energy + Delta-G solvation = -3920.146598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58807 -40.78315 -39.45601 -37.43766 -35.59947 -35.24477 -34.77400 -33.09846 -31.65306 -31.49152 -30.40963 -28.10559 -27.47471 -26.16136 -25.05173 -22.77162 -21.78354 -21.54665 -21.17109 -20.51875 -19.58958 -18.35124 -18.14647 -17.35689 -16.80020 -16.65899 -16.49012 -16.21408 -15.56611 -15.39249 -15.11772 -15.04256 -14.78867 -14.49549 -14.27927 -14.24629 -13.85872 -13.48063 -13.43843 -13.32731 -13.24036 -13.00277 -12.94424 -12.83797 -12.75217 -12.66490 -12.28233 -12.17173 -12.05949 -11.51419 -11.50522 -11.28112 -11.24507 -11.12855 -10.69286 -10.25004 -10.03297 -9.40900 -8.95792 -8.49077 -5.50654 0.49950 0.84223 1.41967 1.43887 1.45459 1.51243 1.63915 1.69217 2.27106 2.54723 3.22266 3.29644 3.36505 3.44660 3.62771 3.80651 3.85306 3.93674 3.98781 4.04166 4.14426 4.23158 4.30338 4.40984 4.47220 4.60886 4.61981 4.72932 4.75727 4.76978 4.81404 4.90408 4.99449 5.00147 5.03023 5.13318 5.24960 5.43152 5.44513 5.46600 5.66064 5.73389 6.25283 6.46768 6.49672 6.86835 7.11553 7.48322 8.22682 8.97507 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003316 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.687605 B = 8441.329002 C = 9393.071051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.086 3.914 3 N -0.307 5.307 4 N -0.353 5.353 5 C 0.117 3.883 6 C 0.493 3.507 7 O -0.581 6.581 8 N -0.692 5.692 9 C 0.121 3.879 10 C 0.143 3.857 11 H 0.054 0.946 12 C -0.116 4.116 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.621 5.621 16 C -0.294 4.294 17 H 0.061 0.939 18 C -0.050 4.050 19 N -0.959 5.959 20 Si 1.086 2.914 21 H -0.317 1.317 22 H -0.297 1.297 23 H -0.258 1.258 24 C 0.109 3.891 25 C -0.097 4.097 26 C -0.203 4.203 27 Cl -0.030 7.030 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.412 0.588 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.016 0.984 41 H 0.045 0.955 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 1.277 3.450 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 N -0.129 5.129 4 N -0.134 5.134 5 C -0.007 4.007 6 C 0.278 3.722 7 O -0.462 6.462 8 N -0.345 5.345 9 C -0.005 4.005 10 C 0.036 3.964 11 H 0.072 0.928 12 C -0.155 4.155 13 C -0.157 4.157 14 C -0.029 4.029 15 N -0.348 5.348 16 C -0.423 4.423 17 H 0.078 0.922 18 C -0.246 4.246 19 N -0.602 5.602 20 Si 0.916 3.084 21 H -0.246 1.246 22 H -0.225 1.225 23 H -0.183 1.183 24 C -0.020 4.020 25 C -0.155 4.155 26 C -0.241 4.241 27 Cl -0.001 7.001 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.251 0.749 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.561 0.770 4.254 11.412 hybrid contribution -0.297 0.370 -0.882 1.001 sum -10.858 1.140 3.372 11.426 Atomic orbital electron populations 1.20357 0.83430 1.04433 1.04649 1.22853 0.98862 0.88414 0.97960 1.77337 0.86257 1.22873 1.26463 1.47707 1.05023 1.03758 1.56942 1.21631 0.85756 0.98081 0.95272 1.21001 0.80781 0.78874 0.91515 1.90683 1.55157 1.53368 1.47001 1.46028 1.28489 1.49449 1.10500 1.21903 0.97366 0.99088 0.82148 1.21506 0.86798 0.93529 0.94565 0.92845 1.22557 0.95749 1.03384 0.93767 1.22700 0.96226 0.98141 0.98633 1.22277 0.92156 0.96838 0.91644 1.45001 1.17631 1.64304 1.07833 1.19821 1.34035 1.05202 0.83206 0.92189 1.26717 0.99650 0.97493 1.00745 1.71000 1.50413 1.38897 0.99858 0.83583 0.76859 0.74732 0.73195 1.24627 1.22482 1.18308 1.21119 0.97237 0.84933 0.98716 1.20613 0.92131 0.98797 1.03997 1.20399 0.91915 0.87756 1.24053 1.98282 1.89531 1.14493 1.97841 0.88299 0.89022 0.90030 0.83472 0.84430 0.74874 0.94419 0.91346 0.90828 0.88025 0.88851 0.90341 0.96684 0.93700 0.93568 0.90300 0.87291 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.31 71.24 0.73 -0.68 16 2 C 0.09 2.55 7.22 43.11 0.31 2.86 16 3 N -0.31 -10.44 12.57 -47.34 -0.60 -11.03 16 4 N -0.35 -11.85 3.10 -338.28 -1.05 -12.90 16 5 C 0.12 3.61 6.73 85.63 0.58 4.18 16 6 C 0.49 18.32 7.90 87.66 0.69 19.01 16 7 O -0.58 -25.90 16.42 -3.04 -0.05 -25.95 16 8 N -0.69 -24.73 4.81 -463.05 -2.23 -26.95 16 9 C 0.12 4.20 5.21 86.38 0.45 4.65 16 10 C 0.14 4.67 3.38 45.34 0.15 4.82 16 11 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 12 C -0.12 -2.92 6.47 31.78 0.21 -2.72 16 13 C -0.12 -3.14 7.08 31.99 0.23 -2.92 16 14 C 0.10 3.56 4.51 86.85 0.39 3.95 16 15 N -0.62 -25.43 2.87 -668.29 -1.92 -27.35 16 16 C -0.29 -14.03 8.51 84.03 0.72 -13.32 16 17 H 0.06 2.94 6.77 -2.91 -0.02 2.92 16 18 C -0.05 -2.61 5.50 84.86 0.47 -2.14 16 19 N -0.96 -54.29 13.70 21.65 0.30 -53.99 16 20 Si 1.09 50.83 24.70 68.60 1.69 52.52 16 21 H -0.32 -15.67 7.11 99.48 0.71 -14.96 16 22 H -0.30 -13.96 7.04 99.48 0.70 -13.26 16 23 H -0.26 -10.79 5.59 99.48 0.56 -10.24 16 24 C 0.11 3.48 6.94 41.40 0.29 3.76 16 25 C -0.10 -2.75 9.94 71.24 0.71 -2.04 16 26 C -0.20 -6.08 6.63 22.02 0.15 -5.93 16 27 Cl -0.03 -0.73 28.59 -2.72 -0.08 -0.81 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.60 8.01 -2.39 -0.02 1.58 16 30 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.14 3.96 7.04 -2.39 -0.02 3.94 16 33 H 0.41 14.54 5.81 -92.71 -0.54 14.00 16 34 H 0.04 1.51 8.10 -2.38 -0.02 1.49 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 1.81 7.84 -2.39 -0.02 1.79 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.02 0.61 5.44 -2.39 -0.01 0.60 16 41 H 0.04 1.80 6.59 -2.39 -0.02 1.79 16 42 H 0.25 14.21 8.73 -92.71 -0.81 13.40 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.11 2.56 7.91 -2.39 -0.02 2.54 16 45 H 0.08 2.24 7.08 -2.39 -0.02 2.22 16 Total: -1.00 -68.79 375.43 2.42 -66.37 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.28 Total: 26.60 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.07 Total: 13.50 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -5.49 Total: -132.23 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.69 Total: 52.52 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -68.79 2.42 -66.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.502 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds