Wall clock time and date at job start Sat Apr 11 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30856 * 125.89080 * 2 1 4 4 N 1.40085 * 108.21863 * 180.19782 * 3 2 1 5 5 C 1.46502 * 126.03043 * 179.81944 * 4 3 2 6 6 C 1.50701 * 109.46817 * 269.68371 * 5 4 3 7 7 O 1.21272 * 120.00343 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99685 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99977 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.09008 * 110.88141 * 57.43064 * 10 9 8 12 12 C 1.55154 * 111.03901 * 181.33162 * 10 9 8 13 13 C 1.54325 * 102.94303 * 153.59308 * 12 10 9 14 14 N 1.47290 * 107.30599 * 337.81911 * 13 12 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 12 16 16 H 1.08005 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00146 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47595 * 59.99628 * 19 17 15 21 21 H 1.48504 * 109.46820 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46978 * 299.99208 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 12 24 24 C 1.35043 * 107.92901 * 359.55218 * 4 3 2 25 25 C 1.50694 * 126.13598 * 180.24297 * 24 4 3 26 26 C 1.35370 * 107.72689 * 0.26570 * 24 4 3 27 27 Cl 1.73609 * 126.04711 * 180.02562 * 26 24 4 28 28 H 1.09003 * 109.47143 * 270.28376 * 1 2 3 29 29 H 1.09006 * 109.47621 * 30.28352 * 1 2 3 30 30 H 1.08999 * 109.47229 * 150.28711 * 1 2 3 31 31 H 1.09005 * 109.46722 * 149.69076 * 5 4 3 32 32 H 1.08992 * 109.47611 * 29.69230 * 5 4 3 33 33 H 0.97000 * 120.00020 * 0.02562 * 8 6 5 34 34 H 1.09005 * 109.46948 * 60.00334 * 9 8 6 35 35 H 1.08992 * 109.47391 * 300.00484 * 9 8 6 36 36 H 1.09002 * 110.72290 * 271.95994 * 12 10 9 37 37 H 1.08994 * 110.71922 * 35.05463 * 12 10 9 38 38 H 1.09004 * 109.88239 * 97.22707 * 13 12 10 39 39 H 1.08999 * 109.88411 * 218.39137 * 13 12 10 40 40 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 42 42 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 43 43 H 1.08997 * 109.47515 * 90.00608 * 25 24 4 44 44 H 1.09007 * 109.47048 * 210.00099 * 25 24 4 45 45 H 1.08998 * 109.47511 * 330.00269 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6088 0.6349 -0.0046 5 6 4.7896 1.5021 -0.0099 6 6 5.1937 1.7917 -1.4325 7 8 4.5578 1.3206 -2.3514 8 7 6.2618 2.5744 -1.6836 9 6 6.6544 2.8564 -3.0665 10 6 7.8875 3.7621 -3.0721 11 1 8.7092 3.3030 -2.5221 12 6 8.3154 4.1115 -4.5219 13 6 9.0353 5.4660 -4.3529 14 7 8.5506 6.0663 -3.0982 15 6 8.9590 7.2631 -2.5728 16 1 8.5397 7.6154 -1.6419 17 6 9.9117 8.0236 -3.2368 18 7 10.4230 7.5941 -4.3710 19 14 10.4692 9.6559 -2.5197 20 1 11.0622 9.4302 -1.1772 21 1 11.4858 10.2675 -3.4129 22 1 9.3032 10.5675 -2.3989 23 6 7.5509 5.1622 -2.5011 24 6 3.6149 -0.7155 0.0027 25 6 4.8360 -1.5987 0.0063 26 6 2.3274 -1.1335 0.0056 27 17 1.7891 -2.7840 0.0155 28 1 -0.3633 0.0051 1.0277 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 5.6095 1.0026 0.5062 32 1 4.5559 2.4372 0.4991 33 1 6.7706 2.9509 -0.9486 34 1 5.8345 3.3566 -3.5821 35 1 6.8874 1.9215 -3.5759 36 1 8.9983 3.3582 -4.9147 37 1 7.4432 4.2133 -5.1675 38 1 10.1125 5.3088 -4.2962 39 1 8.7977 6.1195 -5.1923 40 1 11.0891 8.1253 -4.8348 41 1 6.5450 5.4606 -2.7968 42 1 7.6415 5.1607 -1.4149 43 1 5.1313 -1.8062 1.0348 44 1 4.6083 -2.5355 -0.5023 45 1 5.6515 -1.0933 -0.5109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714646418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:48 Heat of formation + Delta-G solvation = 29.414098 kcal Electronic energy + Delta-G solvation = -26648.040283 eV Core-core repulsion = 22727.689242 eV Total energy + Delta-G solvation = -3920.351041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53102 -40.76991 -39.24933 -37.38367 -36.11608 -35.20216 -34.34429 -32.99872 -31.78029 -30.88727 -29.81806 -28.01508 -27.65242 -26.76107 -24.96659 -22.33673 -21.72078 -21.54539 -21.29191 -20.52737 -18.95907 -18.38806 -18.11055 -17.14552 -16.75888 -16.66539 -16.35203 -15.99734 -15.53707 -15.51493 -15.03323 -14.74293 -14.68392 -14.23098 -14.16820 -14.00843 -13.83729 -13.54679 -13.38049 -13.26006 -13.20992 -13.01694 -12.91019 -12.78806 -12.77721 -12.60921 -12.22707 -12.07607 -11.94963 -11.84200 -11.55236 -11.46700 -11.44733 -11.20062 -10.70334 -10.18257 -10.17203 -9.35169 -8.89885 -7.85151 -5.20489 0.55731 0.93465 1.44223 1.45998 1.49040 1.49212 1.55240 1.69184 2.18179 2.49611 3.33310 3.43371 3.52555 3.57927 3.60850 3.82926 3.86248 4.01694 4.02497 4.07758 4.16290 4.28767 4.43785 4.60171 4.62957 4.68221 4.69167 4.75830 4.79527 4.89213 4.91166 4.96876 5.02562 5.05040 5.07478 5.29555 5.43796 5.44539 5.45658 5.66750 5.77267 5.78024 6.19865 6.43953 6.52366 7.09841 7.10367 7.78048 8.42688 9.25399 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.001879 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.030546 B =14899.196604 C =15316.154365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.082 3.918 3 N -0.314 5.314 4 N -0.356 5.356 5 C 0.113 3.887 6 C 0.496 3.504 7 O -0.575 6.575 8 N -0.707 5.707 9 C 0.147 3.853 10 C -0.093 4.093 11 H 0.096 0.904 12 C -0.124 4.124 13 C 0.182 3.818 14 N -0.629 5.629 15 C -0.241 4.241 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.953 5.953 19 Si 0.979 3.021 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.279 1.279 23 C 0.137 3.863 24 C 0.114 3.886 25 C -0.096 4.096 26 C -0.210 4.210 27 Cl -0.035 7.035 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.419 0.581 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.014 0.986 39 H 0.001 0.999 40 H 0.246 0.754 41 H 0.013 0.987 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -21.792 13.049 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.135 5.135 4 N -0.137 5.137 5 C -0.011 4.011 6 C 0.281 3.719 7 O -0.454 6.454 8 N -0.360 5.360 9 C 0.022 3.978 10 C -0.113 4.113 11 H 0.115 0.885 12 C -0.163 4.163 13 C 0.057 3.943 14 N -0.356 5.356 15 C -0.370 4.370 16 H 0.103 0.897 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.807 3.193 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.206 1.206 23 C 0.012 3.988 24 C -0.015 4.015 25 C -0.154 4.154 26 C -0.248 4.248 27 Cl -0.006 7.006 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.166 0.834 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.361 -20.714 12.347 27.569 hybrid contribution 0.638 0.628 -0.082 0.899 sum -12.723 -20.087 12.265 26.754 Atomic orbital electron populations 1.20332 0.84337 1.04141 1.04416 1.22764 0.98635 0.88937 0.98207 1.77403 0.86963 1.22744 1.26428 1.47803 1.04989 1.03911 1.57000 1.21876 0.86253 0.98680 0.94306 1.21223 0.80175 0.78518 0.91997 1.90770 1.54066 1.52857 1.47683 1.45827 1.30201 1.50258 1.09718 1.21131 0.95329 0.98630 0.82662 1.22416 0.97149 0.94405 0.97289 0.88530 1.22718 1.00406 0.97096 0.96063 1.20962 0.95402 0.90442 0.87480 1.44861 1.46346 1.20438 1.23941 1.19437 1.17728 0.95244 1.04615 0.89723 1.25680 1.00087 1.02602 0.97907 1.70180 1.32518 1.39393 1.18077 0.85151 0.77456 0.79315 0.77404 1.19893 1.22328 1.20552 1.21763 0.91184 0.88965 0.96922 1.21253 0.97295 0.84856 0.98065 1.20688 0.91399 0.97867 1.05443 1.20477 0.92513 0.87395 1.24374 1.98295 1.89748 1.14752 1.97855 0.88548 0.90524 0.89255 0.81163 0.83389 0.74358 0.92992 0.90593 0.89495 0.91504 0.96737 0.98083 0.94486 0.96877 0.92714 0.86916 0.88968 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.31 71.23 0.73 -0.46 16 2 C 0.08 1.89 7.22 43.11 0.31 2.20 16 3 N -0.31 -8.23 12.58 -47.34 -0.60 -8.82 16 4 N -0.36 -7.59 3.10 -338.29 -1.05 -8.64 16 5 C 0.11 1.58 6.55 85.63 0.56 2.14 16 6 C 0.50 10.61 7.90 87.66 0.69 11.31 16 7 O -0.57 -18.49 16.43 -3.00 -0.05 -18.54 16 8 N -0.71 -13.17 5.41 -463.08 -2.50 -15.67 16 9 C 0.15 3.53 5.13 86.38 0.44 3.97 16 10 C -0.09 -2.64 3.10 -9.40 -0.03 -2.66 16 11 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 12 C -0.12 -4.20 6.42 31.78 0.20 -3.99 16 13 C 0.18 8.77 5.38 86.68 0.47 9.24 16 14 N -0.63 -31.16 3.40 -691.30 -2.35 -33.51 16 15 C -0.24 -13.18 10.28 84.03 0.86 -12.32 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 18 N -0.95 -57.07 10.34 21.65 0.22 -56.84 16 19 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.14 4.98 6.40 86.85 0.56 5.54 16 24 C 0.11 2.22 6.94 41.40 0.29 2.51 16 25 C -0.10 -1.10 9.73 71.23 0.69 -0.41 16 26 C -0.21 -4.48 6.63 22.02 0.15 -4.34 16 27 Cl -0.03 -0.61 28.59 -2.72 -0.08 -0.69 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 31 H 0.17 0.77 7.66 -2.38 -0.02 0.75 16 32 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.42 5.39 8.34 -92.71 -0.77 4.62 16 34 H 0.05 1.48 8.10 -2.38 -0.02 1.46 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 38 H 0.01 0.78 7.39 -2.38 -0.02 0.76 16 39 H 0.00 0.05 7.52 -2.39 -0.02 0.03 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.01 0.51 8.00 -2.39 -0.02 0.49 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 1.06 7.91 -2.38 -0.02 1.05 16 45 H 0.08 0.84 7.73 -2.39 -0.02 0.82 16 Total: -1.00 -80.29 388.15 2.25 -78.04 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.23 Total: 8.28 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.39 Total: 9.25 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.28 Total: -123.48 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -80.29 2.25 -78.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714646418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.455 kcal (2) G-P(sol) polarization free energy of solvation -80.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds