Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 N 1.46493 * 109.47205 * 185.56373 * 3 2 1 5 5 C 1.34783 * 119.99740 * 126.96674 * 4 3 2 6 6 O 1.21696 * 119.99706 * 184.92884 * 5 4 3 7 7 C 1.46655 * 119.99955 * 4.92568 * 5 4 3 8 8 C 1.36677 * 126.84195 * 232.94724 * 7 5 4 9 9 N 1.33302 * 107.83110 * 179.97438 * 8 7 5 10 10 C 1.31020 * 109.70609 * 0.14190 * 9 8 7 11 11 Cl 1.73594 * 125.43528 * 180.02562 * 10 9 8 12 12 N 1.34604 * 109.12638 * 359.76329 * 10 9 8 13 13 C 1.46500 * 126.49087 * 180.20400 * 12 10 9 14 14 C 1.46504 * 120.00327 * 306.96643 * 4 3 2 15 15 H 1.08998 * 110.63821 * 12.47062 * 14 4 3 16 16 C 1.55155 * 110.72028 * 249.32528 * 14 4 3 17 17 C 1.54917 * 101.57862 * 276.95995 * 16 14 4 18 18 N 1.47422 * 104.83166 * 322.99051 * 17 16 14 19 19 C 1.36934 * 125.64651 * 204.16313 * 18 17 16 20 20 H 1.07997 * 120.00395 * 175.53370 * 19 18 17 21 21 C 1.38815 * 120.00107 * 355.54146 * 19 18 17 22 22 N 1.31626 * 119.99963 * 323.75424 * 21 19 18 23 23 Si 1.86801 * 120.00062 * 143.75357 * 21 19 18 24 24 H 1.48501 * 109.46802 * 239.99753 * 23 21 19 25 25 H 1.48503 * 109.46790 * 120.00041 * 23 21 19 26 26 H 1.48500 * 109.47235 * 359.97438 * 23 21 19 27 27 C 1.47012 * 108.70624 * 24.13048 * 18 17 16 28 28 H 1.09005 * 109.47151 * 175.04596 * 1 2 3 29 29 H 1.09006 * 109.47238 * 55.04641 * 1 2 3 30 30 H 1.08998 * 109.47535 * 295.04606 * 1 2 3 31 31 H 1.09003 * 109.47217 * 240.00633 * 2 1 3 32 32 H 1.08996 * 109.46938 * 120.00425 * 2 1 3 33 33 H 1.09008 * 109.46723 * 65.56889 * 3 2 1 34 34 H 1.08996 * 109.47633 * 305.57013 * 3 2 1 35 35 H 1.08006 * 126.08284 * 359.97438 * 8 7 5 36 36 H 1.08999 * 109.47020 * 338.98740 * 13 12 10 37 37 H 1.08993 * 109.47479 * 218.97843 * 13 12 10 38 38 H 1.09004 * 109.46671 * 98.97774 * 13 12 10 39 39 H 1.09002 * 111.00171 * 158.88947 * 16 14 4 40 40 H 1.08998 * 111.03877 * 35.04745 * 16 14 4 41 41 H 1.08992 * 110.36749 * 81.83494 * 17 16 14 42 42 H 1.08999 * 110.36104 * 204.04294 * 17 16 14 43 43 H 0.96997 * 119.99482 * 358.78707 * 22 21 19 44 44 H 1.08998 * 110.01366 * 118.42415 * 27 18 17 45 45 H 1.08997 * 109.88367 * 239.52320 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4988 1.4447 -0.1339 5 6 4.0856 2.1774 -1.1011 6 8 5.2889 2.1099 -1.2700 7 6 3.2740 3.0560 -1.9498 8 6 3.2462 3.0784 -3.3161 9 7 2.3794 4.0190 -3.6913 10 6 1.8626 4.5915 -2.6321 11 17 0.6880 5.8695 -2.6509 12 7 2.3836 4.0265 -1.5270 13 6 2.0680 4.3740 -0.1393 14 6 4.3198 0.6505 0.7834 15 1 3.6998 -0.0429 1.3516 16 6 5.1271 1.5720 1.7355 17 6 6.3496 1.9338 0.8554 18 7 6.6480 0.7036 0.0998 19 6 7.8636 0.3709 -0.4354 20 1 7.9997 -0.5890 -0.9113 21 6 8.9212 1.2674 -0.3664 22 7 8.6975 2.5593 -0.4825 23 14 10.6619 0.6404 -0.1086 24 1 11.2141 1.2143 1.1448 25 1 11.5105 1.0497 -1.2565 26 1 10.6446 -0.8412 -0.0085 27 6 5.4245 -0.1071 0.0168 28 1 -0.3634 -1.0239 -0.0887 29 1 -0.3634 0.5888 -0.8423 30 1 -0.3634 0.4350 0.9310 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7603 1.9267 0.9357 34 1 1.5976 1.9844 -0.8358 35 1 3.8239 2.4465 -3.9745 36 1 1.6465 5.3786 -0.1032 37 1 2.9779 4.3400 0.4598 38 1 1.3445 3.6620 0.2580 39 1 5.4362 1.0334 2.6313 40 1 4.5555 2.4630 1.9954 41 1 6.0990 2.7465 0.1737 42 1 7.1979 2.2122 1.4807 43 1 7.7960 2.8837 -0.6339 44 1 5.1315 -0.2348 -1.0252 45 1 5.5932 -1.0810 0.4764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 91.590096 kcal Electronic energy + Delta-G solvation = -29494.671636 eV Core-core repulsion = 25577.016749 eV Total energy + Delta-G solvation = -3917.654887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.42559 -40.03239 -37.23847 -36.53636 -36.20201 -34.39411 -33.08833 -31.86169 -29.84607 -28.95936 -27.76682 -27.34048 -26.12452 -24.21215 -23.30747 -21.91356 -21.59371 -20.69358 -19.99758 -18.59599 -17.78556 -17.22901 -16.85541 -16.54270 -15.74107 -15.62223 -14.98813 -14.78693 -14.37022 -13.98628 -13.78601 -13.61311 -13.52052 -13.41389 -13.15034 -12.97428 -12.78675 -12.47862 -12.13020 -11.99214 -11.91666 -11.83707 -11.68399 -11.54421 -11.12045 -10.89360 -10.62844 -10.51155 -10.24553 -10.17511 -10.07497 -9.97549 -9.88810 -9.49329 -9.38469 -8.56942 -8.33208 -7.93271 -6.62876 -5.94361 -2.72210 1.01651 1.34598 2.44557 2.70906 2.95960 3.28921 3.63918 3.67129 3.80951 4.33498 4.40052 4.55351 4.69959 4.72471 4.78750 4.83924 5.02155 5.08071 5.16570 5.22778 5.27228 5.34638 5.38065 5.46898 5.48008 5.56642 5.75121 5.76135 5.84272 5.86843 6.01634 6.05746 6.24964 6.32064 6.34208 6.45188 6.54991 6.68313 6.98487 7.17713 7.38077 7.49397 7.63393 8.01423 8.50073 8.74876 9.31421 10.11708 10.67945 11.47774 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.004028 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.554160 B = 6950.502939 C = 8220.702157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.107 3.893 4 N -0.603 5.603 5 C 0.553 3.447 6 O -0.421 6.421 7 C -0.040 4.040 8 C 0.050 3.950 9 N -0.465 5.465 10 C 0.248 3.752 11 Cl 0.032 6.968 12 N -0.430 5.430 13 C 0.056 3.944 14 C 0.136 3.864 15 H 0.091 0.909 16 C -0.150 4.150 17 C 0.146 3.854 18 N -0.577 5.577 19 C -0.334 4.334 20 H 0.064 0.936 21 C -0.024 4.024 22 N -0.915 5.915 23 Si 1.057 2.943 24 H -0.294 1.294 25 H -0.298 1.298 26 H -0.295 1.295 27 C 0.142 3.858 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.188 0.812 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.277 0.723 44 H 0.022 0.978 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.230 1.738 3.552 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.017 4.017 4 N -0.339 5.339 5 C 0.336 3.664 6 O -0.288 6.288 7 C -0.157 4.157 8 C -0.102 4.102 9 N -0.187 5.187 10 C -0.038 4.038 11 Cl 0.059 6.941 12 N -0.118 5.118 13 C -0.085 4.085 14 C 0.033 3.967 15 H 0.109 0.891 16 C -0.189 4.189 17 C 0.020 3.980 18 N -0.304 5.304 19 C -0.461 4.461 20 H 0.082 0.918 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.888 3.112 24 H -0.221 1.221 25 H -0.226 1.226 26 H -0.221 1.221 27 C 0.015 3.985 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.205 0.795 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.162 2.483 2.944 20.526 hybrid contribution -1.748 -0.411 0.574 1.886 sum -21.910 2.072 3.518 22.287 Atomic orbital electron populations 1.21702 0.95120 1.02116 1.01706 1.21895 0.96015 0.96647 1.03302 1.21803 0.80616 0.97755 1.01500 1.47832 1.05836 1.47951 1.32330 1.16989 0.87061 0.81121 0.81194 1.91291 1.11250 1.62639 1.63597 1.21508 0.99618 0.98253 0.96273 1.22517 0.98483 0.98121 0.91114 1.70052 1.11874 1.09916 1.26852 1.23093 0.99576 0.97786 0.83353 1.98409 1.52656 1.44866 1.98121 1.45299 1.31244 1.27834 1.07404 1.22460 1.04007 1.03183 0.78898 1.22108 0.91910 0.92486 0.90216 0.89136 1.23337 0.98662 0.98553 0.98384 1.21766 0.93105 0.91246 0.91837 1.44326 1.05405 1.18579 1.62056 1.19612 0.86081 1.01472 1.38940 0.91774 1.25431 1.02429 0.94197 1.00561 1.70660 1.24633 1.14411 1.45906 0.83649 0.76397 0.74489 0.76647 1.22061 1.22613 1.22112 1.21337 0.86912 0.93440 0.96800 0.92259 0.92743 0.92660 0.91094 0.91168 0.91905 0.90421 0.79472 0.88733 0.88710 0.89140 0.90935 0.92347 0.93721 0.94099 0.91108 0.95991 0.95778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.14 -1.27 5.70 -26.73 -0.15 -1.42 16 3 C 0.11 1.07 3.87 -4.04 -0.02 1.05 16 4 N -0.60 -8.61 2.71 -165.56 -0.45 -9.06 16 5 C 0.55 9.74 6.40 -12.86 -0.08 9.66 16 6 O -0.42 -9.85 10.45 5.19 0.05 -9.80 16 7 C -0.04 -0.62 5.20 -82.10 -0.43 -1.05 16 8 C 0.05 0.78 11.86 -17.48 -0.21 0.58 16 9 N -0.47 -7.21 11.21 -11.48 -0.13 -7.33 16 10 C 0.25 3.26 8.48 -90.34 -0.77 2.49 16 11 Cl 0.03 0.32 28.57 -51.86 -1.48 -1.16 16 12 N -0.43 -5.34 2.54 -118.36 -0.30 -5.64 16 13 C 0.06 0.48 9.57 59.85 0.57 1.05 16 14 C 0.14 2.16 3.37 -66.09 -0.22 1.94 16 15 H 0.09 1.16 6.41 -51.93 -0.33 0.83 16 16 C -0.15 -2.61 6.68 -24.58 -0.16 -2.78 16 17 C 0.15 3.50 4.25 -2.53 -0.01 3.49 16 18 N -0.58 -15.07 2.25 -170.08 -0.38 -15.45 16 19 C -0.33 -9.90 9.98 -15.06 -0.15 -10.05 16 20 H 0.06 1.93 8.03 -52.49 -0.42 1.50 16 21 C -0.02 -0.72 4.93 -17.43 -0.09 -0.81 16 22 N -0.91 -29.22 12.80 55.49 0.71 -28.51 16 23 Si 1.06 26.79 30.04 -169.99 -5.11 21.68 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 C 0.14 3.01 6.00 -3.07 -0.02 2.99 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.62 6.74 -51.93 -0.35 0.27 16 33 H 0.06 0.51 7.11 -51.92 -0.37 0.14 16 34 H 0.08 0.80 5.11 -51.93 -0.27 0.54 16 35 H 0.19 2.81 8.06 -52.48 -0.42 2.38 16 36 H 0.09 0.62 7.53 -51.93 -0.39 0.23 16 37 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.09 0.58 5.57 -51.93 -0.29 0.29 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 1.19 4.35 -52.24 -0.23 0.96 16 42 H 0.04 1.11 7.46 -51.93 -0.39 0.72 16 43 H 0.28 8.99 6.09 -40.82 -0.25 8.74 16 44 H 0.02 0.51 7.31 -51.93 -0.38 0.13 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -36.19 363.00 -9.24 -45.43 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.26 Total: -2.08 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.36 Total: 6.46 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.55 Total: -66.00 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.05 Total: -9.80 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -5.11 Total: 21.68 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.48 Total: -1.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.19 -9.24 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.017 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds