Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 N 1.46493 * 109.47205 * 185.56373 * 3 2 1 5 5 C 1.34783 * 119.99740 * 126.96674 * 4 3 2 6 6 O 1.21696 * 119.99706 * 184.92884 * 5 4 3 7 7 C 1.46655 * 119.99955 * 4.92568 * 5 4 3 8 8 C 1.36677 * 126.84195 * 232.94724 * 7 5 4 9 9 N 1.33302 * 107.83110 * 179.97438 * 8 7 5 10 10 C 1.31020 * 109.70609 * 0.14190 * 9 8 7 11 11 Cl 1.73594 * 125.43528 * 180.02562 * 10 9 8 12 12 N 1.34604 * 109.12638 * 359.76329 * 10 9 8 13 13 C 1.46500 * 126.49087 * 180.20400 * 12 10 9 14 14 C 1.46504 * 120.00327 * 306.96643 * 4 3 2 15 15 H 1.08998 * 110.63821 * 12.47062 * 14 4 3 16 16 C 1.55155 * 110.72028 * 249.32528 * 14 4 3 17 17 C 1.54917 * 101.57862 * 276.95995 * 16 14 4 18 18 N 1.47422 * 104.83166 * 322.99051 * 17 16 14 19 19 C 1.36934 * 125.64651 * 204.16313 * 18 17 16 20 20 H 1.07997 * 120.00395 * 175.53370 * 19 18 17 21 21 C 1.38815 * 120.00107 * 355.54146 * 19 18 17 22 22 N 1.31626 * 119.99963 * 323.75424 * 21 19 18 23 23 Si 1.86801 * 120.00062 * 143.75357 * 21 19 18 24 24 H 1.48501 * 109.46802 * 239.99753 * 23 21 19 25 25 H 1.48503 * 109.46790 * 120.00041 * 23 21 19 26 26 H 1.48500 * 109.47235 * 359.97438 * 23 21 19 27 27 C 1.47012 * 108.70624 * 24.13048 * 18 17 16 28 28 H 1.09005 * 109.47151 * 175.04596 * 1 2 3 29 29 H 1.09006 * 109.47238 * 55.04641 * 1 2 3 30 30 H 1.08998 * 109.47535 * 295.04606 * 1 2 3 31 31 H 1.09003 * 109.47217 * 240.00633 * 2 1 3 32 32 H 1.08996 * 109.46938 * 120.00425 * 2 1 3 33 33 H 1.09008 * 109.46723 * 65.56889 * 3 2 1 34 34 H 1.08996 * 109.47633 * 305.57013 * 3 2 1 35 35 H 1.08006 * 126.08284 * 359.97438 * 8 7 5 36 36 H 1.08999 * 109.47020 * 338.98740 * 13 12 10 37 37 H 1.08993 * 109.47479 * 218.97843 * 13 12 10 38 38 H 1.09004 * 109.46671 * 98.97774 * 13 12 10 39 39 H 1.09002 * 111.00171 * 158.88947 * 16 14 4 40 40 H 1.08998 * 111.03877 * 35.04745 * 16 14 4 41 41 H 1.08992 * 110.36749 * 81.83494 * 17 16 14 42 42 H 1.08999 * 110.36104 * 204.04294 * 17 16 14 43 43 H 0.96997 * 119.99482 * 358.78707 * 22 21 19 44 44 H 1.08998 * 110.01366 * 118.42415 * 27 18 17 45 45 H 1.08997 * 109.88367 * 239.52320 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4988 1.4447 -0.1339 5 6 4.0856 2.1774 -1.1011 6 8 5.2889 2.1099 -1.2700 7 6 3.2740 3.0560 -1.9498 8 6 3.2462 3.0784 -3.3161 9 7 2.3794 4.0190 -3.6913 10 6 1.8626 4.5915 -2.6321 11 17 0.6880 5.8695 -2.6509 12 7 2.3836 4.0265 -1.5270 13 6 2.0680 4.3740 -0.1393 14 6 4.3198 0.6505 0.7834 15 1 3.6998 -0.0429 1.3516 16 6 5.1271 1.5720 1.7355 17 6 6.3496 1.9338 0.8554 18 7 6.6480 0.7036 0.0998 19 6 7.8636 0.3709 -0.4354 20 1 7.9997 -0.5890 -0.9113 21 6 8.9212 1.2674 -0.3664 22 7 8.6975 2.5593 -0.4825 23 14 10.6619 0.6404 -0.1086 24 1 11.2141 1.2143 1.1448 25 1 11.5105 1.0497 -1.2565 26 1 10.6446 -0.8412 -0.0085 27 6 5.4245 -0.1071 0.0168 28 1 -0.3634 -1.0239 -0.0887 29 1 -0.3634 0.5888 -0.8423 30 1 -0.3634 0.4350 0.9310 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7603 1.9267 0.9357 34 1 1.5976 1.9844 -0.8358 35 1 3.8239 2.4465 -3.9745 36 1 1.6465 5.3786 -0.1032 37 1 2.9779 4.3400 0.4598 38 1 1.3445 3.6620 0.2580 39 1 5.4362 1.0334 2.6313 40 1 4.5555 2.4630 1.9954 41 1 6.0990 2.7465 0.1737 42 1 7.1979 2.2122 1.4807 43 1 7.7960 2.8837 -0.6339 44 1 5.1315 -0.2348 -1.0252 45 1 5.5932 -1.0810 0.4764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = 68.386047 kcal Electronic energy + Delta-G solvation = -29495.677840 eV Core-core repulsion = 25577.016749 eV Total energy + Delta-G solvation = -3918.661090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.53022 -41.41515 -38.26742 -38.04315 -37.44081 -35.40731 -34.60871 -33.30052 -31.26553 -30.61645 -29.21603 -28.33518 -26.99823 -26.25540 -24.62685 -22.81350 -22.57253 -22.12799 -21.77767 -19.80575 -19.44114 -18.80656 -17.98819 -17.69825 -17.00972 -16.71281 -16.30352 -15.85406 -15.73976 -15.56284 -15.43822 -14.87710 -14.79979 -14.63799 -14.59243 -14.03733 -13.72289 -13.56134 -13.47458 -13.14989 -12.93976 -12.91565 -12.70735 -12.67181 -12.47027 -12.30396 -12.19657 -11.92061 -11.89446 -11.80410 -11.62594 -11.53190 -11.46314 -11.00618 -10.83162 -10.25004 -9.75641 -9.54622 -8.73938 -8.30769 -5.00923 0.00277 0.21727 1.37059 1.55388 1.58890 1.64599 1.72887 1.81314 2.10836 2.71161 3.23181 3.28153 3.59518 3.62997 3.73448 3.75177 3.80649 4.01682 4.07804 4.10615 4.18747 4.26506 4.33104 4.45427 4.53874 4.57027 4.62133 4.69603 4.72519 4.86391 4.88993 4.93536 4.98550 5.16532 5.19385 5.22247 5.25473 5.40790 5.51889 5.55068 5.66724 5.77508 6.27822 6.46724 6.49028 7.07550 7.20786 7.92746 8.51821 9.12304 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.004028 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.554160 B = 6950.502939 C = 8220.702157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.102 3.898 4 N -0.591 5.591 5 C 0.558 3.442 6 O -0.492 6.492 7 C -0.050 4.050 8 C 0.033 3.967 9 N -0.492 5.492 10 C 0.254 3.746 11 Cl 0.065 6.935 12 N -0.419 5.419 13 C 0.045 3.955 14 C 0.153 3.847 15 H 0.141 0.859 16 C -0.132 4.132 17 C 0.150 3.850 18 N -0.596 5.596 19 C -0.340 4.340 20 H 0.051 0.949 21 C -0.082 4.082 22 N -0.946 5.946 23 Si 1.113 2.887 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.274 1.274 27 C 0.137 3.863 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.180 0.820 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.021 0.979 42 H -0.005 1.005 43 H 0.260 0.740 44 H -0.003 1.003 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.435 1.496 5.940 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.019 4.019 4 N -0.325 5.325 5 C 0.343 3.657 6 O -0.364 6.364 7 C -0.167 4.167 8 C -0.119 4.119 9 N -0.214 5.214 10 C -0.033 4.033 11 Cl 0.093 6.907 12 N -0.106 5.106 13 C -0.095 4.095 14 C 0.049 3.951 15 H 0.159 0.841 16 C -0.171 4.171 17 C 0.025 3.975 18 N -0.322 5.322 19 C -0.469 4.469 20 H 0.069 0.931 21 C -0.278 4.278 22 N -0.590 5.590 23 Si 0.939 3.061 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.010 3.990 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.197 0.803 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.014 0.986 43 H 0.071 0.929 44 H 0.015 0.985 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -23.468 2.216 5.376 24.177 hybrid contribution -0.932 -0.302 -0.245 1.010 sum -24.400 1.913 5.132 25.007 Atomic orbital electron populations 1.21662 0.93276 1.02565 1.02606 1.21872 0.97529 0.95456 1.02710 1.22162 0.77323 0.99107 1.03307 1.47875 1.07713 1.46204 1.30745 1.17276 0.86318 0.80960 0.81138 1.91281 1.14238 1.64982 1.65927 1.21085 1.00603 0.99332 0.95716 1.22530 0.99048 0.98693 0.91658 1.70011 1.12629 1.10488 1.28284 1.23386 0.99219 0.97633 0.83057 1.98425 1.51120 1.43105 1.98045 1.45390 1.29926 1.26503 1.08801 1.22860 1.04536 1.05544 0.76538 1.22027 0.91252 0.92425 0.89365 0.84124 1.23227 0.95914 1.00257 0.97742 1.21627 0.94177 0.90214 0.91479 1.44561 1.06047 1.19838 1.61775 1.19868 0.88265 1.00556 1.38165 0.93056 1.26842 1.06414 0.93891 1.00657 1.70777 1.23588 1.15516 1.49143 0.82906 0.71709 0.75042 0.76481 1.21424 1.22503 1.19888 1.21510 0.87135 0.94027 0.96300 0.91945 0.93031 0.90743 0.93385 0.90110 0.88117 0.90563 0.80306 0.86386 0.89454 0.86073 0.89323 0.89264 0.96194 0.98648 0.92910 0.98515 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.14 -1.98 5.70 30.59 0.17 -1.81 16 3 C 0.10 1.66 3.87 86.38 0.33 2.00 16 4 N -0.59 -15.81 2.71 -795.92 -2.15 -17.96 16 5 C 0.56 20.03 6.40 86.44 0.55 20.58 16 6 O -0.49 -24.47 10.45 -4.33 -0.05 -24.51 16 7 C -0.05 -1.56 5.20 39.95 0.21 -1.35 16 8 C 0.03 1.09 11.86 84.10 1.00 2.09 16 9 N -0.49 -15.32 11.21 -190.25 -2.13 -17.45 16 10 C 0.25 6.33 8.48 180.25 1.53 7.86 16 11 Cl 0.07 1.15 28.57 -2.72 -0.08 1.07 16 12 N -0.42 -9.77 2.54 -528.39 -1.34 -11.11 16 13 C 0.05 0.62 9.57 127.77 1.22 1.84 16 14 C 0.15 4.49 3.37 46.18 0.16 4.65 16 15 H 0.14 2.86 6.41 -2.39 -0.02 2.85 16 16 C -0.13 -4.34 6.68 31.99 0.21 -4.13 16 17 C 0.15 7.48 4.25 86.86 0.37 7.85 16 18 N -0.60 -32.32 2.25 -692.01 -1.56 -33.88 16 19 C -0.34 -21.06 9.98 84.03 0.84 -20.22 16 20 H 0.05 3.22 8.03 -2.91 -0.02 3.19 16 21 C -0.08 -5.14 4.93 84.86 0.42 -4.72 16 22 N -0.95 -63.72 12.80 21.65 0.28 -63.44 16 23 Si 1.11 55.84 30.04 68.60 2.06 57.90 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 C 0.14 5.82 6.00 86.73 0.52 6.35 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.02 6.74 -2.39 -0.02 1.00 16 33 H 0.10 0.99 7.11 -2.38 -0.02 0.97 16 34 H 0.08 1.33 5.11 -2.39 -0.01 1.32 16 35 H 0.18 5.94 8.06 -2.91 -0.02 5.92 16 36 H 0.12 1.09 7.53 -2.39 -0.02 1.07 16 37 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.12 0.92 5.57 -2.38 -0.01 0.91 16 39 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.02 1.15 4.35 -7.17 -0.03 1.12 16 42 H 0.00 -0.28 7.46 -2.39 -0.02 -0.30 16 43 H 0.26 18.09 6.09 -92.71 -0.56 17.52 16 44 H 0.00 -0.15 7.31 -2.39 -0.02 -0.16 16 45 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -87.24 363.00 4.47 -82.77 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.20 Total: 6.37 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 8.25 Total: 20.25 kcal Atomic # 7 Polarization: -136.94 SS G_CDS: -6.91 Total: -143.85 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 2.06 Total: 57.90 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.08 Total: 1.07 kcal Total: -87.24 4.47 -82.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.154 kcal (2) G-P(sol) polarization free energy of solvation -87.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds