Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46964 * 2 1 4 4 N 1.46498 * 109.47010 * 167.39963 * 3 2 1 5 5 C 1.34779 * 120.00349 * 306.77168 * 4 3 2 6 6 O 1.21696 * 119.99532 * 121.27553 * 5 4 3 7 7 C 1.46660 * 119.99953 * 301.27845 * 5 4 3 8 8 C 1.36672 * 126.83884 * 240.82535 * 7 5 4 9 9 N 1.33303 * 107.82741 * 179.97438 * 8 7 5 10 10 C 1.31017 * 109.70694 * 359.97438 * 9 8 7 11 11 Cl 1.73605 * 125.43790 * 179.97438 * 10 9 8 12 12 N 1.34599 * 109.12851 * 359.77213 * 10 9 8 13 13 C 1.46503 * 126.49416 * 180.26105 * 12 10 9 14 14 C 1.46503 * 119.99807 * 126.77006 * 4 3 2 15 15 H 1.08997 * 110.64443 * 330.14102 * 14 4 3 16 16 C 1.55163 * 110.87091 * 93.39104 * 14 4 3 17 17 C 1.54903 * 101.58352 * 82.93304 * 16 14 4 18 18 N 1.47428 * 104.83522 * 37.00849 * 17 16 14 19 19 C 1.36933 * 125.64996 * 156.13920 * 18 17 16 20 20 H 1.08002 * 119.99991 * 179.69530 * 19 18 17 21 21 C 1.38813 * 119.99923 * 359.69073 * 19 18 17 22 22 N 1.31612 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47117 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46978 * 119.99821 * 23 21 19 26 26 H 1.48491 * 109.47031 * 240.00034 * 23 21 19 27 27 C 1.47027 * 108.69963 * 335.87381 * 18 17 16 28 28 H 1.09000 * 109.47035 * 82.38488 * 1 2 3 29 29 H 1.08994 * 109.47008 * 202.38372 * 1 2 3 30 30 H 1.08996 * 109.47042 * 322.38715 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00574 * 2 1 3 32 32 H 1.08991 * 109.47441 * 119.99666 * 2 1 3 33 33 H 1.09003 * 109.46742 * 47.40602 * 3 2 1 34 34 H 1.08999 * 109.47476 * 287.40622 * 3 2 1 35 35 H 1.07998 * 126.08990 * 359.96745 * 8 7 5 36 36 H 1.09009 * 109.46715 * 227.90033 * 13 12 10 37 37 H 1.09004 * 109.46798 * 347.89136 * 13 12 10 38 38 H 1.08997 * 109.47798 * 107.89614 * 13 12 10 39 39 H 1.08997 * 111.00133 * 201.00924 * 16 14 4 40 40 H 1.09000 * 111.00389 * 324.85630 * 16 14 4 41 41 H 1.09006 * 110.36479 * 278.17290 * 17 16 14 42 42 H 1.08995 * 110.37045 * 155.84732 * 17 16 14 43 43 H 0.97002 * 119.99833 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.87971 * 120.47681 * 27 18 17 45 45 H 1.08997 * 109.87961 * 241.63901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4736 1.4536 0.3013 5 6 3.9356 0.8299 1.4032 6 8 4.7596 -0.0595 1.2984 7 6 3.4451 1.2230 2.7283 8 6 4.1879 1.7182 3.7632 9 7 3.3627 1.9471 4.7848 10 6 2.1395 1.6222 4.4461 11 17 0.7428 1.7557 5.4685 12 7 2.1378 1.1726 3.1774 13 6 0.9725 0.7138 2.4171 14 6 4.4052 2.1428 -0.5951 15 1 4.0342 2.1282 -1.6199 16 6 4.6527 3.5995 -0.1215 17 6 5.7438 3.3942 0.9586 18 7 6.5974 2.3135 0.4323 19 6 7.9050 2.0917 0.7729 20 1 8.4450 1.2662 0.3332 21 6 8.5365 2.9278 1.6834 22 7 7.8783 3.9335 2.2196 23 14 10.3205 2.6256 2.1475 24 1 10.8296 1.4406 1.4115 25 1 11.1331 3.8165 1.7917 26 1 10.4169 2.3791 3.6086 27 6 5.8102 1.5096 -0.5141 28 1 -0.3633 0.1362 -1.0186 29 1 -0.3633 -0.9502 0.3913 30 1 -0.3633 0.8140 0.6272 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 1.5053 2.0169 0.7566 34 1 1.8713 1.8876 -0.9806 35 1 5.2536 1.8928 3.7549 36 1 1.2035 -0.2372 1.9369 37 1 0.1265 0.5840 3.0921 38 1 0.7206 1.4531 1.6568 39 1 5.0233 4.2183 -0.9387 40 1 3.7492 4.0281 0.3123 41 1 5.2906 3.0936 1.9033 42 1 6.3249 4.3070 1.0891 43 1 8.3195 4.5176 2.8561 44 1 6.2817 1.5267 -1.4966 45 1 5.7342 0.4833 -0.1549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = 121.314144 kcal Electronic energy + Delta-G solvation = -29806.610221 eV Core-core repulsion = 25890.244265 eV Total energy + Delta-G solvation = -3916.365956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.23810 -39.90879 -37.08697 -36.96069 -36.79573 -34.04819 -33.14761 -31.77674 -29.77305 -29.05146 -27.44803 -27.01282 -26.09784 -24.59614 -23.18818 -22.11680 -21.43239 -20.46826 -20.02475 -18.86405 -17.71191 -16.93756 -16.81101 -16.35407 -15.85628 -15.59992 -15.10332 -14.63660 -14.51467 -13.99928 -13.76239 -13.58570 -13.43662 -13.15437 -12.85858 -12.66554 -12.43243 -12.28588 -12.22457 -11.87463 -11.77251 -11.69340 -11.52789 -11.46803 -10.93775 -10.89449 -10.78690 -10.67533 -10.50297 -10.14913 -10.02263 -9.83152 -9.60343 -9.49454 -9.34695 -8.56084 -8.35804 -8.06793 -6.69565 -5.55426 -2.95549 1.18232 1.55693 2.41054 2.80050 3.04870 3.33317 3.47632 3.53731 3.55770 4.33805 4.45204 4.51623 4.58691 4.64539 4.71805 4.99285 5.06172 5.12357 5.29772 5.35450 5.38825 5.41703 5.51317 5.58183 5.65027 5.69097 5.73926 5.75945 5.85313 5.98868 6.02079 6.27026 6.46694 6.56545 6.61657 6.67754 6.84998 6.89278 7.34003 7.54535 7.60330 7.73069 7.88219 7.91834 8.12724 8.44088 9.32102 9.92580 10.56648 11.48460 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.004701 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.345068 B = 5955.369647 C = 7492.806491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C 0.117 3.883 4 N -0.660 5.660 5 C 0.641 3.359 6 O -0.448 6.448 7 C -0.064 4.064 8 C 0.069 3.931 9 N -0.464 5.464 10 C 0.244 3.756 11 Cl 0.027 6.973 12 N -0.429 5.429 13 C 0.009 3.991 14 C 0.147 3.853 15 H 0.080 0.920 16 C -0.162 4.162 17 C 0.149 3.851 18 N -0.598 5.598 19 C -0.212 4.212 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.100 3.900 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.196 0.804 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.106 0.894 43 H 0.250 0.750 44 H 0.027 0.973 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 -4.914 -3.216 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.201 4.201 3 C -0.006 4.006 4 N -0.398 5.398 5 C 0.427 3.573 6 O -0.315 6.315 7 C -0.180 4.180 8 C -0.083 4.083 9 N -0.185 5.185 10 C -0.042 4.042 11 Cl 0.054 6.946 12 N -0.118 5.118 13 C -0.131 4.131 14 C 0.044 3.956 15 H 0.098 0.902 16 C -0.202 4.202 17 C 0.024 3.976 18 N -0.325 5.325 19 C -0.340 4.340 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.741 3.259 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.026 4.026 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.212 0.788 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.124 0.876 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.220 -5.103 -2.399 20.992 hybrid contribution 0.328 -0.216 -0.280 0.482 sum -19.892 -5.319 -2.680 20.765 Atomic orbital electron populations 1.22061 0.94765 1.02335 1.02738 1.22588 0.96290 0.97808 1.03394 1.21850 0.80932 0.95850 1.01934 1.47011 1.06495 1.60800 1.25535 1.16460 0.79830 0.79422 0.81618 1.90731 1.30537 1.23630 1.86603 1.21788 0.83073 1.14145 0.99009 1.22768 1.00181 0.99025 0.86278 1.70093 0.97708 1.21220 1.29527 1.23118 0.91198 1.06328 0.83530 1.98391 1.35057 1.96822 1.64318 1.45216 1.07829 1.47935 1.10792 1.24245 0.86783 1.03920 0.98173 1.22039 0.89855 0.92533 0.91181 0.90176 1.23497 1.00431 0.94728 1.01495 1.21993 0.89179 0.95377 0.91037 1.44427 1.08851 1.30774 1.48412 1.19079 0.85379 1.09899 1.19689 0.90629 1.24713 0.98291 0.98091 0.99523 1.69788 1.34929 1.18918 1.33542 0.86049 0.84632 0.77155 0.78022 1.20661 1.21950 1.21778 1.22179 0.88510 0.97513 0.94412 0.91925 0.91985 0.91870 0.90545 0.90855 0.91768 0.89514 0.78757 0.86680 0.89348 0.87086 0.91236 0.92335 0.96758 0.87643 0.93883 0.95545 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.59 37.16 0.32 -0.54 16 2 C -0.16 -1.39 4.95 -26.73 -0.13 -1.52 16 3 C 0.12 1.19 5.22 -4.04 -0.02 1.17 16 4 N -0.66 -10.03 2.71 -165.56 -0.45 -10.48 16 5 C 0.64 11.67 3.47 -12.86 -0.04 11.63 16 6 O -0.45 -9.74 14.75 5.19 0.08 -9.67 16 7 C -0.06 -1.13 6.34 -82.10 -0.52 -1.65 16 8 C 0.07 1.38 10.69 -17.48 -0.19 1.20 16 9 N -0.46 -8.70 11.21 -11.49 -0.13 -8.83 16 10 C 0.24 3.75 8.48 -90.35 -0.77 2.98 16 11 Cl 0.03 0.31 28.45 -51.86 -1.48 -1.17 16 12 N -0.43 -6.04 3.17 -118.35 -0.38 -6.41 16 13 C 0.01 0.08 7.06 59.85 0.42 0.50 16 14 C 0.15 2.47 3.58 -66.09 -0.24 2.23 16 15 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 16 C -0.16 -2.97 6.78 -24.58 -0.17 -3.14 16 17 C 0.15 3.56 5.34 -2.53 -0.01 3.55 16 18 N -0.60 -15.25 3.38 -170.08 -0.58 -15.83 16 19 C -0.21 -5.99 10.27 -15.06 -0.15 -6.15 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 23 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 C 0.10 2.13 6.13 -3.06 -0.02 2.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 5.53 -51.93 -0.29 -0.01 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.75 4.25 -51.93 -0.22 0.53 16 33 H 0.06 0.62 4.83 -51.93 -0.25 0.37 16 34 H 0.09 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.20 4.35 7.70 -52.49 -0.40 3.95 16 36 H 0.12 0.99 3.87 -51.92 -0.20 0.79 16 37 H 0.09 0.61 7.34 -51.93 -0.38 0.23 16 38 H 0.11 0.85 2.86 -51.93 -0.15 0.70 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.37 5.58 -51.93 -0.29 0.08 16 42 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.61 5.01 -51.93 -0.26 1.35 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -33.08 350.60 -9.37 -42.45 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.65 Total: 1.37 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -1.62 Total: 11.97 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.97 Total: -67.88 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.48 Total: -1.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.08 -9.37 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.762 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds