Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46964 * 2 1 4 4 N 1.46498 * 109.47010 * 167.39963 * 3 2 1 5 5 C 1.34779 * 120.00349 * 306.77168 * 4 3 2 6 6 O 1.21696 * 119.99532 * 121.27553 * 5 4 3 7 7 C 1.46660 * 119.99953 * 301.27845 * 5 4 3 8 8 C 1.36672 * 126.83884 * 240.82535 * 7 5 4 9 9 N 1.33303 * 107.82741 * 179.97438 * 8 7 5 10 10 C 1.31017 * 109.70694 * 359.97438 * 9 8 7 11 11 Cl 1.73605 * 125.43790 * 179.97438 * 10 9 8 12 12 N 1.34599 * 109.12851 * 359.77213 * 10 9 8 13 13 C 1.46503 * 126.49416 * 180.26105 * 12 10 9 14 14 C 1.46503 * 119.99807 * 126.77006 * 4 3 2 15 15 H 1.08997 * 110.64443 * 330.14102 * 14 4 3 16 16 C 1.55163 * 110.87091 * 93.39104 * 14 4 3 17 17 C 1.54903 * 101.58352 * 82.93304 * 16 14 4 18 18 N 1.47428 * 104.83522 * 37.00849 * 17 16 14 19 19 C 1.36933 * 125.64996 * 156.13920 * 18 17 16 20 20 H 1.08002 * 119.99991 * 179.69530 * 19 18 17 21 21 C 1.38813 * 119.99923 * 359.69073 * 19 18 17 22 22 N 1.31612 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47117 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46978 * 119.99821 * 23 21 19 26 26 H 1.48491 * 109.47031 * 240.00034 * 23 21 19 27 27 C 1.47027 * 108.69963 * 335.87381 * 18 17 16 28 28 H 1.09000 * 109.47035 * 82.38488 * 1 2 3 29 29 H 1.08994 * 109.47008 * 202.38372 * 1 2 3 30 30 H 1.08996 * 109.47042 * 322.38715 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00574 * 2 1 3 32 32 H 1.08991 * 109.47441 * 119.99666 * 2 1 3 33 33 H 1.09003 * 109.46742 * 47.40602 * 3 2 1 34 34 H 1.08999 * 109.47476 * 287.40622 * 3 2 1 35 35 H 1.07998 * 126.08990 * 359.96745 * 8 7 5 36 36 H 1.09009 * 109.46715 * 227.90033 * 13 12 10 37 37 H 1.09004 * 109.46798 * 347.89136 * 13 12 10 38 38 H 1.08997 * 109.47798 * 107.89614 * 13 12 10 39 39 H 1.08997 * 111.00133 * 201.00924 * 16 14 4 40 40 H 1.09000 * 111.00389 * 324.85630 * 16 14 4 41 41 H 1.09006 * 110.36479 * 278.17290 * 17 16 14 42 42 H 1.08995 * 110.37045 * 155.84732 * 17 16 14 43 43 H 0.97002 * 119.99833 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.87971 * 120.47681 * 27 18 17 45 45 H 1.08997 * 109.87961 * 241.63901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4736 1.4536 0.3013 5 6 3.9356 0.8299 1.4032 6 8 4.7596 -0.0595 1.2984 7 6 3.4451 1.2230 2.7283 8 6 4.1879 1.7182 3.7632 9 7 3.3627 1.9471 4.7848 10 6 2.1395 1.6222 4.4461 11 17 0.7428 1.7557 5.4685 12 7 2.1378 1.1726 3.1774 13 6 0.9725 0.7138 2.4171 14 6 4.4052 2.1428 -0.5951 15 1 4.0342 2.1282 -1.6199 16 6 4.6527 3.5995 -0.1215 17 6 5.7438 3.3942 0.9586 18 7 6.5974 2.3135 0.4323 19 6 7.9050 2.0917 0.7729 20 1 8.4450 1.2662 0.3332 21 6 8.5365 2.9278 1.6834 22 7 7.8783 3.9335 2.2196 23 14 10.3205 2.6256 2.1475 24 1 10.8296 1.4406 1.4115 25 1 11.1331 3.8165 1.7917 26 1 10.4169 2.3791 3.6086 27 6 5.8102 1.5096 -0.5141 28 1 -0.3633 0.1362 -1.0186 29 1 -0.3633 -0.9502 0.3913 30 1 -0.3633 0.8140 0.6272 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 1.5053 2.0169 0.7566 34 1 1.8713 1.8876 -0.9806 35 1 5.2536 1.8928 3.7549 36 1 1.2035 -0.2372 1.9369 37 1 0.1265 0.5840 3.0921 38 1 0.7206 1.4531 1.6568 39 1 5.0233 4.2183 -0.9387 40 1 3.7492 4.0281 0.3123 41 1 5.2906 3.0936 1.9033 42 1 6.3249 4.3070 1.0891 43 1 8.3195 4.5176 2.8561 44 1 6.2817 1.5267 -1.4966 45 1 5.7342 0.4833 -0.1549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = 99.653775 kcal Electronic energy + Delta-G solvation = -29807.549485 eV Core-core repulsion = 25890.244265 eV Total energy + Delta-G solvation = -3917.305220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51555 -41.28823 -38.52435 -38.12179 -37.95681 -35.46799 -34.42996 -33.40830 -31.24471 -30.80054 -28.97669 -27.93279 -27.06851 -26.53334 -24.52481 -22.96780 -22.71222 -21.94640 -21.78802 -20.11316 -18.96277 -18.76356 -18.13429 -17.63966 -17.08259 -16.83586 -16.53716 -16.31096 -15.77115 -15.65127 -15.05865 -14.87777 -14.54764 -14.38875 -14.25476 -13.87770 -13.77693 -13.52914 -13.19651 -13.12024 -12.97523 -12.89664 -12.84311 -12.69934 -12.56647 -12.44357 -12.13131 -11.98802 -11.92916 -11.83412 -11.60237 -11.42033 -11.37582 -10.90313 -10.70752 -10.61791 -9.69575 -9.33456 -8.75095 -7.72095 -5.13607 -0.01088 0.25859 1.06965 1.44120 1.46309 1.55419 1.60409 1.67819 2.14772 2.51622 3.29403 3.38729 3.58843 3.75306 3.77979 3.79234 3.91746 3.95592 4.05630 4.10612 4.31817 4.36891 4.42111 4.45008 4.59848 4.71062 4.72806 4.73968 4.83311 4.90790 5.03630 5.10218 5.17835 5.22100 5.25538 5.28014 5.47510 5.50104 5.66408 5.70081 5.86052 5.94866 6.35196 6.38818 6.54070 6.74137 7.17334 7.85140 8.47491 9.28605 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.004701 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.345068 B = 5955.369647 C = 7492.806491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.158 4.158 3 C 0.107 3.893 4 N -0.657 5.657 5 C 0.647 3.353 6 O -0.497 6.497 7 C -0.061 4.061 8 C 0.037 3.963 9 N -0.498 5.498 10 C 0.250 3.750 11 Cl 0.067 6.933 12 N -0.414 5.414 13 C -0.005 4.005 14 C 0.161 3.839 15 H 0.130 0.870 16 C -0.144 4.144 17 C 0.151 3.849 18 N -0.615 5.615 19 C -0.227 4.227 20 H 0.069 0.931 21 C -0.062 4.062 22 N -0.943 5.943 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.297 1.297 27 C 0.092 3.908 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.080 0.920 41 H -0.008 1.008 42 H 0.066 0.934 43 H 0.244 0.756 44 H 0.032 0.968 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.665 -5.101 -4.878 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C -0.013 4.013 4 N -0.394 5.394 5 C 0.434 3.566 6 O -0.367 6.367 7 C -0.179 4.179 8 C -0.115 4.115 9 N -0.220 5.220 10 C -0.037 4.037 11 Cl 0.095 6.905 12 N -0.101 5.101 13 C -0.142 4.142 14 C 0.059 3.941 15 H 0.147 0.853 16 C -0.184 4.184 17 C 0.026 3.974 18 N -0.341 5.341 19 C -0.357 4.357 20 H 0.087 0.913 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.224 1.224 27 C -0.033 4.033 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.170 0.830 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.010 0.990 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.110 -5.298 -4.106 25.024 hybrid contribution 1.396 -0.204 0.286 1.439 sum -22.714 -5.502 -3.820 23.681 Atomic orbital electron populations 1.22035 0.91859 1.03428 1.03980 1.22539 0.98623 0.96207 1.02192 1.22309 0.77555 0.97480 1.03956 1.47102 1.08554 1.59663 1.24096 1.16624 0.78638 0.78837 0.82492 1.90714 1.32725 1.26145 1.87139 1.21571 0.84511 1.13531 0.98304 1.22186 0.99063 1.02015 0.88256 1.69956 0.99245 1.22942 1.29847 1.23421 0.91435 1.04602 0.84252 1.98407 1.32290 1.96601 1.63219 1.45377 1.07699 1.46559 1.10485 1.24774 0.85531 1.04887 0.99019 1.21969 0.87892 0.90593 0.93688 0.85263 1.23339 0.99046 0.96242 0.99794 1.21764 0.90124 0.93136 0.92406 1.44633 1.08526 1.31909 1.49082 1.19327 0.87054 1.09559 1.19724 0.91291 1.25431 1.01866 0.98246 0.99873 1.70050 1.35964 1.19515 1.33797 0.85137 0.80569 0.77317 0.77145 1.19659 1.21470 1.22396 1.22324 0.91106 0.96580 0.93332 0.90750 0.91158 0.90423 0.91058 0.92891 0.90566 0.86426 0.83016 0.85802 0.86521 0.84943 0.90061 0.90114 0.98994 0.91585 0.94631 0.94991 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.59 71.98 0.62 -0.29 16 2 C -0.16 -2.13 4.95 30.60 0.15 -1.97 16 3 C 0.11 1.74 5.22 86.38 0.45 2.19 16 4 N -0.66 -18.66 2.71 -795.91 -2.16 -20.82 16 5 C 0.65 23.81 3.47 86.44 0.30 24.11 16 6 O -0.50 -22.58 14.75 -4.33 -0.06 -22.64 16 7 C -0.06 -2.19 6.34 39.95 0.25 -1.93 16 8 C 0.04 1.58 10.69 84.10 0.90 2.48 16 9 N -0.50 -19.37 11.21 -190.25 -2.13 -21.51 16 10 C 0.25 7.45 8.48 180.25 1.53 8.98 16 11 Cl 0.07 1.39 28.45 -2.72 -0.08 1.32 16 12 N -0.41 -11.06 3.17 -528.36 -1.68 -12.74 16 13 C 0.00 -0.07 7.06 127.77 0.90 0.83 16 14 C 0.16 5.06 3.58 46.18 0.17 5.22 16 15 H 0.13 2.91 7.93 -2.39 -0.02 2.89 16 16 C -0.14 -5.07 6.78 31.99 0.22 -4.85 16 17 C 0.15 7.47 5.34 86.85 0.46 7.93 16 18 N -0.62 -32.54 3.38 -692.00 -2.34 -34.89 16 19 C -0.23 -13.42 10.27 84.03 0.86 -12.55 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 22 N -0.94 -57.96 10.09 21.65 0.22 -57.74 16 23 Si 0.97 48.44 29.55 68.60 2.03 50.46 16 24 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 27 C 0.09 3.94 6.13 86.73 0.53 4.47 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.24 5.53 -2.39 -0.01 0.22 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.96 4.25 -2.39 -0.01 0.95 16 33 H 0.08 1.10 4.83 -2.39 -0.01 1.09 16 34 H 0.12 1.28 7.79 -2.39 -0.02 1.26 16 35 H 0.15 7.71 7.70 -2.91 -0.02 7.69 16 36 H 0.12 1.72 3.87 -2.38 -0.01 1.71 16 37 H 0.12 1.07 7.34 -2.38 -0.02 1.05 16 38 H 0.13 1.37 2.86 -2.39 -0.01 1.37 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H -0.01 -0.42 5.58 -2.38 -0.01 -0.43 16 42 H 0.07 3.81 5.87 -2.39 -0.01 3.79 16 43 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 2.45 5.01 -2.39 -0.01 2.44 16 Total: -1.00 -79.67 350.60 2.65 -77.02 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.04 Total: 10.09 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 7.81 Total: 31.44 kcal Atomic # 7 Polarization: -139.60 SS G_CDS: -8.09 Total: -147.69 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Atomic # 17 Polarization: 1.39 SS G_CDS: -0.08 Total: 1.32 kcal Total: -79.67 2.65 -77.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.677 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds