Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41261 * 128.07986 * 2 1 4 4 N 1.30132 * 106.59365 * 180.25054 * 3 2 1 5 5 O 1.20889 * 111.97743 * 359.76700 * 4 3 2 6 6 C 1.34637 * 111.46945 * 359.97438 * 5 4 3 7 7 C 1.47507 * 126.94145 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00250 * 186.20497 * 7 6 5 9 9 N 1.34774 * 120.00207 * 6.20284 * 7 6 5 10 10 C 1.46504 * 120.00074 * 185.28451 * 9 7 6 11 11 C 1.53000 * 109.47478 * 264.10670 * 10 9 7 12 12 O 1.42898 * 109.47114 * 65.00312 * 11 10 9 13 13 C 1.46495 * 120.00030 * 5.29107 * 9 7 6 14 14 C 1.53001 * 109.47446 * 272.74672 * 13 9 7 15 15 N 1.46896 * 109.47537 * 179.97438 * 14 13 9 16 16 C 1.46901 * 110.99921 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46961 * 179.97438 * 16 15 14 18 18 O 1.21296 * 120.00174 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00088 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00232 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99840 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47167 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47025 * 119.99914 * 24 22 20 27 27 H 1.48494 * 109.47368 * 239.99838 * 24 22 20 28 28 H 1.08999 * 109.47265 * 270.13655 * 1 2 3 29 29 H 1.09004 * 109.47585 * 30.13603 * 1 2 3 30 30 H 1.09003 * 109.47534 * 150.13666 * 1 2 3 31 31 H 1.08005 * 126.70574 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47069 * 24.10870 * 10 9 7 33 33 H 1.09002 * 109.46684 * 144.10461 * 10 9 7 34 34 H 1.09001 * 109.46850 * 185.00548 * 11 10 9 35 35 H 1.09001 * 109.47112 * 305.00020 * 11 10 9 36 36 H 0.96694 * 114.00294 * 180.02562 * 12 11 10 37 37 H 1.09008 * 109.46834 * 32.74378 * 13 9 7 38 38 H 1.08998 * 109.47371 * 152.73877 * 13 9 7 39 39 H 1.09009 * 109.46493 * 300.00075 * 14 13 9 40 40 H 1.09000 * 109.47104 * 59.98905 * 14 13 9 41 41 H 1.00896 * 111.00337 * 56.04178 * 15 14 13 42 42 H 1.08994 * 109.47050 * 299.99295 * 16 15 14 43 43 H 1.08996 * 109.47213 * 60.00322 * 16 15 14 44 44 H 0.97001 * 119.99849 * 359.97438 * 19 17 16 45 45 H 0.97000 * 119.99343 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 -0.0055 5 8 3.5994 -0.5735 -0.0042 6 6 2.3508 -1.0771 0.0031 7 6 1.9695 -2.5020 0.0062 8 8 0.8005 -2.8188 -0.1010 9 7 2.9168 -3.4528 0.1277 10 6 2.5535 -4.8676 0.0147 11 6 2.3341 -5.4510 1.4120 12 8 1.2064 -4.8186 2.0206 13 6 4.3100 -3.0717 0.3728 14 6 5.0123 -2.8193 -0.9629 15 7 6.4090 -2.4365 -0.7171 16 6 7.1164 -2.1863 -1.9800 17 6 8.5426 -1.7965 -1.6883 18 8 8.9317 -1.7338 -0.5412 19 7 9.3860 -1.5185 -2.7021 20 6 10.6836 -1.1644 -2.4367 21 1 11.0298 -1.1078 -1.4153 22 6 11.5531 -0.8773 -3.4819 23 7 11.1316 -0.9458 -4.7248 24 14 13.3209 -0.3942 -3.1203 25 1 13.5429 -0.3916 -1.6520 26 1 14.2410 -1.3699 -3.7579 27 1 13.5843 0.9625 -3.6636 28 1 -0.3634 0.0024 1.0276 29 1 -0.3634 0.8888 -0.5159 30 1 -0.3634 -0.8912 -0.5117 31 1 2.0947 2.1541 0.0004 32 1 1.6362 -4.9619 -0.5665 33 1 3.3568 -5.4103 -0.4836 34 1 2.1512 -6.5227 1.3337 35 1 3.2208 -5.2774 2.0216 36 1 1.0083 -5.1396 2.9109 37 1 4.3376 -2.1636 0.9751 38 1 4.8185 -3.8759 0.9045 39 1 4.9846 -3.7274 -1.5652 40 1 4.5036 -2.0151 -1.4945 41 1 6.8850 -3.1374 -0.1691 42 1 7.1038 -3.0903 -2.5888 43 1 6.6223 -1.3781 -2.5192 44 1 9.0752 -1.5698 -3.6195 45 1 11.7385 -0.7450 -5.4543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717063314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = -73.121986 kcal Electronic energy + Delta-G solvation = -29866.355112 eV Core-core repulsion = 25500.848608 eV Total energy + Delta-G solvation = -4365.506504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.03889 -41.06119 -40.12966 -38.17440 -37.43023 -36.19396 -35.73685 -35.43634 -33.47464 -33.25743 -31.32894 -30.13869 -28.99225 -27.62729 -25.75015 -25.22983 -23.95037 -23.51426 -22.50072 -21.18341 -20.82575 -19.91799 -19.03588 -18.68939 -18.31818 -17.85055 -17.74911 -17.12136 -16.86560 -16.43031 -16.24605 -15.99253 -15.62155 -15.33341 -15.22409 -14.84120 -14.77590 -14.56397 -14.23366 -14.16516 -14.03952 -13.79346 -13.61423 -13.53960 -13.38537 -13.13267 -12.92319 -12.78624 -12.39823 -12.28589 -12.25790 -12.16481 -12.10741 -11.50469 -11.40440 -11.24259 -10.84819 -10.52621 -10.36380 -10.00677 -9.82866 -9.30856 -8.46219 -5.94701 -0.23902 1.10409 1.36984 1.42107 1.49496 1.56572 1.87714 2.02732 2.06409 2.30317 2.94933 3.21269 3.23711 3.32870 3.49952 3.61703 3.71151 3.90856 4.01545 4.04137 4.22277 4.27466 4.31488 4.33197 4.44831 4.49152 4.53975 4.61171 4.64841 4.73276 4.74839 4.81425 4.89787 4.94985 5.01502 5.26549 5.41604 5.42098 5.84759 6.04323 6.10178 6.46574 6.60667 6.81285 6.96042 7.12310 7.13445 7.57136 8.12225 8.71601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002408 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.097767 B =11625.543488 C =12861.793861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.122 4.122 3 C -0.014 4.014 4 N -0.372 5.372 5 O 0.123 5.877 6 C -0.119 4.119 7 C 0.608 3.392 8 O -0.521 6.521 9 N -0.589 5.589 10 C 0.107 3.893 11 C 0.058 3.942 12 O -0.588 6.588 13 C 0.112 3.888 14 C 0.054 3.946 15 N -0.674 5.674 16 C 0.069 3.931 17 C 0.440 3.560 18 O -0.620 6.620 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.390 0.610 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.350 0.650 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 -7.107 8.497 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C -0.191 4.191 4 N -0.072 5.072 5 O 0.051 5.949 6 C -0.184 4.184 7 C 0.394 3.606 8 O -0.398 6.398 9 N -0.321 5.321 10 C -0.014 4.014 11 C -0.021 4.021 12 O -0.395 6.395 13 C -0.011 4.011 14 C -0.076 4.076 15 N -0.308 5.308 16 C -0.064 4.064 17 C 0.228 3.772 18 O -0.506 6.506 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.495 -5.688 8.553 24.729 hybrid contribution 0.391 -0.788 -0.302 0.931 sum -22.104 -6.476 8.251 24.466 Atomic orbital electron populations 1.20373 0.84815 1.04633 1.03984 1.22030 1.00012 0.90020 1.00623 1.25579 0.86797 1.03496 1.03240 1.73853 1.24527 0.92226 1.16560 1.85263 1.27772 1.15015 1.66897 1.24251 0.85328 0.96796 1.12044 1.16591 0.85278 0.81781 0.76966 1.90811 1.17775 1.80649 1.50553 1.47686 1.07522 1.06764 1.70079 1.21930 1.03247 0.78826 0.97403 1.22688 0.88816 0.96826 0.93747 1.86614 1.49991 1.67278 1.35663 1.21666 0.79700 1.02913 0.96822 1.22278 0.88265 0.99652 0.97389 1.59841 1.01944 1.51660 1.17321 1.21466 0.90486 1.01865 0.92548 1.20822 0.88570 0.82695 0.85134 1.90492 1.79015 1.58746 1.22357 1.41944 1.10155 1.60735 1.08405 1.19704 0.87271 1.44724 0.94363 0.90259 1.26051 1.04112 0.96912 0.94331 1.69684 1.38198 1.49374 0.99054 0.84871 0.76991 0.78180 0.78305 1.19712 1.19478 1.19774 0.89440 0.88221 0.90628 0.75482 0.89874 0.85788 0.90225 0.92523 0.76101 0.90217 0.86992 0.93041 0.92199 0.83024 0.91118 0.88872 0.77053 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.01 71.23 0.71 -0.59 16 2 C -0.12 -2.64 6.36 -19.45 -0.12 -2.76 16 3 C -0.01 -0.30 12.14 85.69 1.04 0.74 16 4 N -0.37 -10.66 12.04 -58.55 -0.71 -11.36 16 5 O 0.12 3.43 6.53 65.87 0.43 3.86 16 6 C -0.12 -2.98 6.67 24.38 0.16 -2.81 16 7 C 0.61 14.95 7.44 86.69 0.65 15.59 16 8 O -0.52 -14.72 14.18 -3.93 -0.06 -14.78 16 9 N -0.59 -11.35 2.43 -825.61 -2.01 -13.36 16 10 C 0.11 1.51 5.82 86.38 0.50 2.02 16 11 C 0.06 0.67 7.38 71.98 0.53 1.20 16 12 O -0.59 -9.93 12.95 -148.93 -1.93 -11.85 16 13 C 0.11 2.16 5.23 86.38 0.45 2.61 16 14 C 0.05 1.22 5.48 86.30 0.47 1.70 16 15 N -0.67 -20.39 6.13 -517.94 -3.17 -23.56 16 16 C 0.07 2.36 6.17 85.56 0.53 2.89 16 17 C 0.44 21.00 7.82 87.66 0.69 21.69 16 18 O -0.62 -34.25 15.78 -3.08 -0.05 -34.30 16 19 N -0.58 -29.78 5.29 -306.98 -1.62 -31.40 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.19 13.05 21.67 0.28 -49.91 16 24 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.47 6.64 -2.39 -0.02 1.45 16 31 H 0.23 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.08 1.44 7.33 -2.39 -0.02 1.42 16 33 H 0.12 1.02 8.12 -2.39 -0.02 1.00 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.39 3.21 9.12 -74.06 -0.68 2.54 16 37 H 0.08 1.87 5.80 -2.38 -0.01 1.86 16 38 H 0.11 1.59 8.05 -2.39 -0.02 1.57 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.54 6.64 -2.39 -0.02 1.53 16 41 H 0.35 10.36 8.43 -89.70 -0.76 9.61 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -78.78 383.50 -1.01 -79.78 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.10 Total: 37.80 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 6.89 Total: 23.82 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -7.23 Total: -129.59 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -1.60 Total: -57.07 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -78.78 -1.01 -79.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717063314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.663 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds